These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 851 fasta sequence [CTACTACACTCTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCGACCCAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCGGGGATGAAGCTCAGAGCAAGAGAGGTATTTTGACTCTAAAATATCCAATCGAGCACGGTATCATCACAAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTTTACAACGAATTACGTGTAGCACCTGAGGAACATCCTGTTTTATTGACTGAAGCTCCACTGAACCCAAAAGCTAATCGTGAAAAAATGACTCAAATTATGTTTGAAACTTTCAATAGCCCAGCTATGTATGTAGCTATTCAAGCTGTCTTGTCACTCTATGCTTCCGGACGTACTACTGGTATCGTTCTAGACTCAGGTGATGGCGTTTCTCACACTGTACCAATCTACGAAGGGTATGCTTTACCCCACGCAATCCTTCGTCTAGATTTAGCTGGTCGCGACCTTAACTGATTATCTCATGAAAAATTTTGACTGAGAGAGGCTACTCTTTCACAACTACAGCTGAAAGAGAAATCGGGAGAGACATCAAAGAAAAACTTTGCTACGTCGCTCTTGATTTCGAACAANAATGGCTACCGCAGCTGCAAGTACATCTCTAGAGAAAAGGTATGAATACCTGANGGGCAAGNATCACTATGGGAATGAACGATTCCGCTGNCCANAANCTNTTTTCAACATTATTCCTGGGT] [+] EMBL CA764435 [CTACTACACTCTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCGACCCAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCGGGGATGAAGCTCAGAGCAAGAGAGGTATTTTGACTCTAAAATATCCAATCGAGCACGGTATCATCACAAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTTTACAACGAATTACGTGTAGCACCTGAGGAACATCCTGTTTTATTGACTGAAGCTCCACTGAACCCAAAAGCTAATCGTGAAAAAATGACTCAAATTATGTTTGAAACTTTCAATAGCCCAGCTATGTATGTAGCTATTCAAGCTGTCTTGTCACTCTATGCTTCCGGACGTACTACTGGTATCGTTCTAGACTCAGGTGATGGCGTTTCTCACACTGTACCAATCTACGAAGGGTATGCTTTACCCCACGCAATCCTTCGTCTAGATTTAGCTGGTCGCGACCTTAACTGATTATCTCATGAAAAATTTTGACTGAGAGAGGCTACTCTTTCACAACTACAGCTGAAAGAGAAATCGGGAGAGACATCAAAGAAAAACTTTGCTACGTCGCTCTTGATTTCGAACAANAATGGCTACCGCAGCTGCAAGTACATCTCTAGAGAAAAGGTATGAATACCTGANGGGCAAGNATCACTATGGGAATGAACGATTCCGCTGNCCANAANCTNTTTTCAACATTATTCCTGGGT] consensusID : consensus_2897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [NGTAGGACGAGACAAGGGGGACAGACGCTACTACACTACTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCCGACCNAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCCGGAGATGAAGCTCAAGANCAAGGAGAGAGTATTTTCGNCNNCTAAAAATATCCCCATTCGAGCACCGGNCCTCATTCAACAAATTNGGCGNTNGATTATGNATNAAAANNTCCCGGNCATGCA] [+] EMBL CB096403 [NGTAGGACGAGACAAGGGGGACAGACGCTACTACACTACTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCCGACCNAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCCGGAGATGAAGCTCAAGANCAAGGAGAGAGTATTTTCGNCNNCTAAAAATATCCCCATTCGAGCACCGGNCCTCATTCAACAAATTNGGCGNTNGATTATGNATNAAAANNTCCCGGNCATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2897#0 ---------------------------CTACTACACT-CTGTCCCGTGCACGTTAATAAA 32 consensus_2897#1 NGTAGGACGAGACAAGGGGGACAGACGCTACTACACTACTGTCCCGTGCACGTTAATAAA 60 ********** ********************** consensus_2897#0 GAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATC 92 consensus_2897#1 GAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATC 120 ************************************************************ consensus_2897#0 CGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAAT 152 consensus_2897#1 CGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAAT 180 ************************************************************ consensus_2897#0 TGTCGGTC-GACCCAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACG 211 consensus_2897#1 TGTCGGTCCGACCNAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACG 240 ******** **** ********************************************** consensus_2897#0 TC-GGGGATGAAGCTCAGAGCAAGAGAGGTATTTTGACTCTAAAATATCCAATCGAGCAC 270 consensus_2897#1 TCCGGAGATGAAGCTCAAGANCAAGGAGAGAGT---ATTTTCG-----NCNNCTAAAAAT 292 ** ** *********** * *** * * * * * * * * consensus_2897#0 GGTATCATCACAAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTTTACAACGAA 330 consensus_2897#1 ATCCCCATTCGAGCACCGGNCCTCATTCAACAAATTNGGCGNTNGATTATGNATNAAAAN 352 *** * ** ** * ***** *** * * * * * * consensus_2897#0 TTACGTGTAGCACCTGAGGAACATCCTGTTTTATTGACTGAAGCTCCACTGAACCCAAAA 390 consensus_2897#1 NTCCCGGNCATGCA---------------------------------------------- 366 * * * * consensus_2897#0 GCTAATCGTGAAAAAATGACTCAAATTATGTTTGAAACTTTCAATAGCCCAGCTATGTAT 450 consensus_2897#1 ------------------------------------------------------------ consensus_2897#0 GTAGCTATTCAAGCTGTCTTGTCACTCTATGCTTCCGGACGTACTACTGGTATCGTTCTA 510 consensus_2897#1 ------------------------------------------------------------ consensus_2897#0 GACTCAGGTGATGGCGTTTCTCACACTGTACCAATCTACGAAGGGTATGCTTTACCCCAC 570 consensus_2897#1 ------------------------------------------------------------ consensus_2897#0 GCAATCCTTCGTCTAGATTTAGCTGGTCGCGACCTTAACTGATTATCTCATGAAAAATTT 630 consensus_2897#1 ------------------------------------------------------------ consensus_2897#0 TGACTGAGAGAGGCTACTCTTTCACAACTACAGCTGAAAGAGAAATCGGGAGAGACATCA 690 consensus_2897#1 ------------------------------------------------------------ consensus_2897#0 AAGAAAAACTTTGCTACGTCGCTCTTGATTTCGAACAANAATGGCTACCGCAGCTGCAAG 750 consensus_2897#1 ------------------------------------------------------------ consensus_2897#0 TACATCTCTAGAGAAAAGGTATGAATACCTGANGGGCAAGNATCACTATGGGAATGAACG 810 consensus_2897#1 ------------------------------------------------------------ consensus_2897#0 ATTCCGCTGNCCANAANCTNTTTTCAACATTATTCCTGGGT 851 consensus_2897#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||