These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [NCCAAGAGTTCCAGAAACCAGANGTTAACCTTGGAATTTCACCACAAGGCTGAAGGAAGGCTTACACAGAGGAATGTGAACCGGCTGAGCGAATCAGTCGGCCACACTGAGCTGCAGGTTGCAGCTGGTGCCCTGCTAGGCTTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA] [+] EMBL AU161492 [NCCAAGAGTTCCAGAAACCAGANGTTAACCTTGGAATTTCACCACAAGGCTGAAGGAAGGCTTACACAGAGGAATGTGAACCGGCTGAGCGAATCAGTCGGCCACACTGAGCTGCAGGTTGCAGCTGGTGCCCTGCTAGGCTTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA] consensusID : consensus_2901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [ATTCCAAGTTCCGGCCCTACCAACTTGGAAGGTTGCCAAGGGTTTGGCAGCCTGGTGCCCCTGCTAGGCTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA] [+] EMBL AU161487 [ATTCCAAGTTCCGGCCCTACCAACTTGGAAGGTTGCCAAGGGTTTGGCAGCCTGGTGCCCCTGCTAGGCTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2901#0 NCCAAGAGTTCCAGAAACCAGANGTTAACCTTGGAATTTCACCACAAGGCTGAAGGAAGG 60 consensus_2901#1 ------------------------------------------------------------ consensus_2901#0 CTTACACAGAGGAATGTGAACCGGCTGAGCGAATCAGTCGGCCACACTGAGCTGCAGGTT 120 consensus_2901#1 ------------ATTCCAAGTT--CCGGCCCTACCAACTTGGAAGGTTGCCAAGGGTTTG 46 * * * * * * * ** * * ** * * consensus_2901#0 GCAGC-TGGTGCCC-TGCTAGGCTTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAAC 178 consensus_2901#1 GCAGCCTGGTGCCCCTGCTAGGCT-CCTTGTGACCTTAGTCGTCTATGCCACACTGTAAC 105 ***** ******** ********* *********************************** consensus_2901#0 ACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATA 238 consensus_2901#1 ACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATA 165 ************************************************************ consensus_2901#0 TAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCCTTGCTTTCTGCACTCATT 298 consensus_2901#1 TAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGC-TTGCTTTCTGCACTCATT 224 ***************************************** ****************** consensus_2901#0 TATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA 343 consensus_2901#1 TATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA 269 ********************************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||