cluster # 2901

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Oryza sativa
cluster # 2901 cluster # 2901 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2901#0 length = 343 sequences # 1

consensus_2901#1 length = 269 sequences # 1

consensusID : consensus_2901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [NCCAAGAGTTCCAGAAACCAGANGTTAACCTTGGAATTTCACCACAAGGCTGAAGGAAGGCTTACACAGAGGAATGTGAACCGGCTGAGCGAATCAGTCGGCCACACTGAGCTGCAGGTTGCAGCTGGTGCCCTGCTAGGCTTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA]

[+] EMBL AU161492             [NCCAAGAGTTCCAGAAACCAGANGTTAACCTTGGAATTTCACCACAAGGCTGAAGGAAGGCTTACACAGAGGAATGTGAACCGGCTGAGCGAATCAGTCGGCCACACTGAGCTGCAGGTTGCAGCTGGTGCCCTGCTAGGCTTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA]




>consensus_2901#0
NCCAAGAGTTCCAGAAACCAGANGTTAACCTTGGAATTTCACCACAAGGCTGAAGGAAGG
CTTACACAGAGGAATGTGAACCGGCTGAGCGAATCAGTCGGCCACACTGAGCTGCAGGTT
GCAGCTGGTGCCCTGCTAGGCTTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACAC
AACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATA
ATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCCTTGCTTTCTGCACTCATTTA
TTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA

consensusID : consensus_2901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [ATTCCAAGTTCCGGCCCTACCAACTTGGAAGGTTGCCAAGGGTTTGGCAGCCTGGTGCCCCTGCTAGGCTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA]

[+] EMBL AU161487             [ATTCCAAGTTCCGGCCCTACCAACTTGGAAGGTTGCCAAGGGTTTGGCAGCCTGGTGCCCCTGCTAGGCTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA]




>consensus_2901#1
ATTCCAAGTTCCGGCCCTACCAACTTGGAAGGTTGCCAAGGGTTTGGCAGCCTGGTGCCC
CTGCTAGGCTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAACACAACTATCATCTTC
ACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATATAATTACACGAGGAA
TTCACAGTTAGCACCACAAAATTAGCTTGCTTTCTGCACTCATTTATTCAGTAAGAAATG
TATGGGCATTTTATGGTTCTTGAGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2901#0      NCCAAGAGTTCCAGAAACCAGANGTTAACCTTGGAATTTCACCACAAGGCTGAAGGAAGG 60
consensus_2901#1      ------------------------------------------------------------
                                                                                  

consensus_2901#0      CTTACACAGAGGAATGTGAACCGGCTGAGCGAATCAGTCGGCCACACTGAGCTGCAGGTT 120
consensus_2901#1      ------------ATTCCAAGTT--CCGGCCCTACCAACTTGGAAGGTTGCCAAGGGTTTG 46
                                  * *   *     * *  *  * **    *  *   **    *    * 

consensus_2901#0      GCAGC-TGGTGCCC-TGCTAGGCTTCCTTGTGACCTTAGTCGTCTATGCCACACTGTAAC 178
consensus_2901#1      GCAGCCTGGTGCCCCTGCTAGGCT-CCTTGTGACCTTAGTCGTCTATGCCACACTGTAAC 105
                      ***** ******** ********* ***********************************

consensus_2901#0      ACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATA 238
consensus_2901#1      ACAACTATCATCTTCACATTCTTCAGTTCATTATATAGATTGTTTACTCAACAATCAATA 165
                      ************************************************************

consensus_2901#0      TAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGCCTTGCTTTCTGCACTCATT 298
consensus_2901#1      TAATTACACGAGGAATTCACAGTTAGCACCACAAAATTAGC-TTGCTTTCTGCACTCATT 224
                      ***************************************** ******************

consensus_2901#0      TATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA 343
consensus_2901#1      TATTCAGTAAGAAATGTATGGGCATTTTATGGTTCTTGAGAAAAA 269
                      *********************************************