These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2024 fasta sequence [TGAGGTGATCGACGCTATCTGTCCCTACCGGAAGGAAGGGTATGGATTCGTCATTCACCTCAGGAATGACATACTCTGTGCCGTTTGGATGAACATGAACATACCTTGCAAGTGTGCCACACGGCATGTCCTAATCACAACTTTCCGAATTGAATGTCAGCTCGATAAGGATGATTTTGAACCTAAAGTCCTCGAGGTCCTACACTCCACCTGCCGTAGAATTGGTATGCTTCGAAGCAAAGCACCCGGGCATGAGTCCTATGACAGATTGTGTTTCATACAGGAATATCTGGACGATTCATCTGAGATTGATCCTTCGATAGCTTTGATGATGGGAGCAAGGTCCAGCTACTCCGAAGCTGATGAAGTTGACCCAAAGATGCTGCTTTGTTGTAGGGAGTTTTTGAGCATAAGAGAACTTAGTTCATGTGTAGTTCTTGAAGAATGTAGGGTAATGGTCAAATCAGAATTCTATTTCATTTGTCAGTCGGGTCAACACACATATTTATATAAGATCTCTACTGCAAGAGGAAAGTTGACATGCCATGAAACCATTCTAGAAGCAGAACACTCTTTAGAGACAATTAGGAATGGGGATGTCGGAATAGATGATCCGCCTGCATGGCATTTTGTGAACTATGGAGTGAAGCTTTATGTGATCCCCTCTGTTCCACAGTACAATCACTATTATGAGGTGGATGTCTACAGAAACTCCTCTCTCATCTTGGAAAGCAAACGGCCTAGTATTTGTTTCTCTGCAGTTTGTCGAGTTGGGCAACGGATTGTGGCATTGGGTGATACTTTGGAGGCCGTGTATATTCTTGATCTCCAAAATGTGGAGTGGGTCTTTTGCAAGACATCGTCGACGTTTTTAGACTTAAGAAAGGAAATCAAGATTTCTGGATTTGTAGACCTTGGTAATGATTCAATGATGATTTCAGAAGTTGATGCATGTGAGTGTTTTATTCTAGATCTTAAGAAGAAGCAATGGTTTGTTGTAGAGCCGCCTAATGGTGACATCTGGCAGTACTGTGTTGGTCTGTTGAGCGGAACATGTATGTTCATTGAGGGCTTTATATATACCTGCTCAGATGGGGAAATGGTTGCATATGAGTTGATCGAGAAAGATGGTTTATACCATTGGGATGCACCTGTCATAATGAGGTTACCATGGAAGAAGTTCTCTAACAGGAAATTTATGGCGTTCTGTCCAATTTGTAAAGATGTCATACATGATGACATTGCATTCAGTATTGTGGAGGCGCGTCCGTTTGGTTCAAGTCATACAGTAGCTACTACAATAGTACAAGTGAAGCTTCAGGAAACGACACGAGGATCCAAAAGACCAGTTGGAATTGCTCATGCAGATATTTCAACGTCATCGATTGAACAAAATGGATGGATCTTATCCAACTACGCATTTACTTTATAAGCAACTTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGCAATTGCAACGGTTGAATTCTCGCACGCGCGCGGGA] [+] EMBL AK105279 [TGAGGTGATCGACGCTATCTGTCCCTACCGGAAGGAAGGGTATGGATTCGTCATTCACCTCAGGAATGACATACTCTGTGCCGTTTGGATGAACATGAACATACCTTGCAAGTGTGCCACACGGCATGTCCTAATCACAACTTTCCGAATTGAATGTCAGCTCGATAAGGATGATTTTGAACCTAAAGTCCTCGAGGTCCTACACTCCACCTGCCGTAGAATTGGTATGCTTCGAAGCAAAGCACCCGGGCATGAGTCCTATGACAGATTGTGTTTCATACAGGAATATCTGGACGATTCATCTGAGATTGATCCTTCGATAGCTTTGATGATGGGAGCAAGGTCCAGCTACTCCGAAGCTGATGAAGTTGACCCAAAGATGCTGCTTTGTTGTAGGGAGTTTTTGAGCATAAGAGAACTTAGTTCATGTGTAGTTCTTGAAGAATGTAGGGTAATGGTCAAATCAGAATTCTATTTCATTTGTCAGTCGGGTCAACACACATATTTATATAAGATCTCTACTGCAAGAGGAAAGTTGACATGCCATGAAACCATTCTAGAAGCAGAACACTCTTTAGAGACAATTAGGAATGGGGATGTCGGAATAGATGATCCGCCTGCATGGCATTTTGTGAACTATGGAGTGAAGCTTTATGTGATCCCCTCTGTTCCACAGTACAATCACTATTATGAGGTGGATGTCTACAGAAACTCCTCTCTCATCTTGGAAAGCAAACGGCCTAGTATTTGTTTCTCTGCAGTTTGTCGAGTTGGGCAACGGATTGTGGCATTGGGTGATACTTTGGAGGCCGTGTATATTCTTGATCTCCAAAATGTGGAGTGGGTCTTTTGCAAGACATCGTCGACGTTTTTAGACTTAAGAAAGGAAATCAAGATTTCTGGATTTGTAGACCTTGGTAATGATTCAATGATGATTTCAGAAGTTGATGCATGTGAGTGTTTTATTCTAGATCTTAAGAAGAAGCAATGGTTTGTTGTAGAGCCGCCTAATGGTGACATCTGGCAGTACTGTGTTGGTCTGTTGAGCGGAACATGTATGTTCATTGAGGGCTTTATATATACCTGCTCAGATGGGGAAATGGTTGCATATGAGTTGATCGAGAAAGATGGTTTATACCATTGGGATGCACCTGTCATAATGAGGTTACCATGGAAGAAGTTCTCTAACAGGAAATTTATGGCGTTCTGTCCAATTTGTAAAGATGTCATACATGATGACATTGCATTCAGTATTGTGGAGGCGCGTCCGTTTGGTTCAAGTCATACAGTAGCTACTACAATAGTACAAGTGAAGCTTCAGGAAACGACACGAGGATCCAAAAGACCAGTTGGAATTGCTCATGCAGATATTTCAACGTCATCGATTGAACAAAATGGATGGATCTTATCCAACTACGCATTTACTTTATAAGCAACTTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGCAATTGCAACGGTTGAATTCTCGCACGCGCGCGGGA] consensusID : consensus_2902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 918 fasta sequence [AACTACGCATTTACTTTATAAGCAACTGTAAGGTTTTTGCAACAGTGAAATCTATGATACTTGATTGCTTTTCTATTCTGTTTTATCTGATTTAACATATGCATTAATATATTTGCAGTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGACACGCTCCCCGTCGATCTCCGCGCCTTCTTCGCAATCTCCATGTCAACCGCCCCGGCAACGGGAGCGATCCCGAGCTAAGCGTCCGCAACGCACGATCGGGAAGAACGCAAATGCCGCCTGCGCCGAGCAGCTGGCCTAGCCTGGCTGTGCACGCGGCTGTCGCCGTCGCCGCCGCCGCCGCCGCTACTCCACGACGACGAGCAAGCAGATGAGATTTTGTGGGGGGAGTCTCTCGCTTCCGGTTTGAG] [-] EMBL AK108497 [AACTACGCATTTACTTTATAAGCAACTGTAAGGTTTTTGCAACAGTGAAATCTATGATACTTGATTGCTTTTCTATTCTGTTTTATCTGATTTAACATATGCATTAATATATTTGCAGTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCGGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCGTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGACACGCTCCCCGTCGATCTCCGCGCCTTCTTCGCAATCTCCATGTCAACCGCCCCGGCAACGGGAGCGATCCCGAGCTAAGCGTCCGCAACGCACGATCGGGAAGAACGCAAATGCCGCCTGCGCCGAGCAGCTGGCCTAGCCTGGCTGTGCACGCGGCTGTCGCCGTCGCCGCCGCCGCCGCCGCTACTCCACGACGACGAGCAAGCAGATGAGATTTTGTGGGGGGAGTCTCTCGCTTCCGGTTTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2902#0 TGAGGTGATCGACGCTATCTGTCCCTACCGGAAGGAAGGGTATGGATTCGTCATTCACCT 60 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 CAGGAATGACATACTCTGTGCCGTTTGGATGAACATGAACATACCTTGCAAGTGTGCCAC 120 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 ACGGCATGTCCTAATCACAACTTTCCGAATTGAATGTCAGCTCGATAAGGATGATTTTGA 180 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 ACCTAAAGTCCTCGAGGTCCTACACTCCACCTGCCGTAGAATTGGTATGCTTCGAAGCAA 240 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 AGCACCCGGGCATGAGTCCTATGACAGATTGTGTTTCATACAGGAATATCTGGACGATTC 300 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 ATCTGAGATTGATCCTTCGATAGCTTTGATGATGGGAGCAAGGTCCAGCTACTCCGAAGC 360 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 TGATGAAGTTGACCCAAAGATGCTGCTTTGTTGTAGGGAGTTTTTGAGCATAAGAGAACT 420 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 TAGTTCATGTGTAGTTCTTGAAGAATGTAGGGTAATGGTCAAATCAGAATTCTATTTCAT 480 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 TTGTCAGTCGGGTCAACACACATATTTATATAAGATCTCTACTGCAAGAGGAAAGTTGAC 540 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 ATGCCATGAAACCATTCTAGAAGCAGAACACTCTTTAGAGACAATTAGGAATGGGGATGT 600 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 CGGAATAGATGATCCGCCTGCATGGCATTTTGTGAACTATGGAGTGAAGCTTTATGTGAT 660 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 CCCCTCTGTTCCACAGTACAATCACTATTATGAGGTGGATGTCTACAGAAACTCCTCTCT 720 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 CATCTTGGAAAGCAAACGGCCTAGTATTTGTTTCTCTGCAGTTTGTCGAGTTGGGCAACG 780 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 GATTGTGGCATTGGGTGATACTTTGGAGGCCGTGTATATTCTTGATCTCCAAAATGTGGA 840 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 GTGGGTCTTTTGCAAGACATCGTCGACGTTTTTAGACTTAAGAAAGGAAATCAAGATTTC 900 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 TGGATTTGTAGACCTTGGTAATGATTCAATGATGATTTCAGAAGTTGATGCATGTGAGTG 960 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 TTTTATTCTAGATCTTAAGAAGAAGCAATGGTTTGTTGTAGAGCCGCCTAATGGTGACAT 1020 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 CTGGCAGTACTGTGTTGGTCTGTTGAGCGGAACATGTATGTTCATTGAGGGCTTTATATA 1080 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 TACCTGCTCAGATGGGGAAATGGTTGCATATGAGTTGATCGAGAAAGATGGTTTATACCA 1140 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 TTGGGATGCACCTGTCATAATGAGGTTACCATGGAAGAAGTTCTCTAACAGGAAATTTAT 1200 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 GGCGTTCTGTCCAATTTGTAAAGATGTCATACATGATGACATTGCATTCAGTATTGTGGA 1260 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 GGCGCGTCCGTTTGGTTCAAGTCATACAGTAGCTACTACAATAGTACAAGTGAAGCTTCA 1320 consensus_2902#1 ------------------------------------------------------------ consensus_2902#0 GGAAACGACACGAGGATCCAAAAGACCAGT-TGGAATTGCTCATGCAGATATTTCAACGT 1379 consensus_2902#1 ---AACTACGCATTTACTTTATAAGCAACTGTAAGGTTTTTGCAACAGTGAAATCTATGA 57 *** ** * * * * * * * * ** * *** * ** * * consensus_2902#0 CA-TCGATTGAA---CAAAATGGATGGATCTTATCCAAC-TACGCATTTACTTTATAAGC 1434 consensus_2902#1 TACTTGATTGCTTTTCTATTCTGTTTTATCTGATTTAACATATGCATTAA-TATATTTGC 116 * * ***** * * * * **** ** *** ** ***** * * *** ** consensus_2902#0 AACTTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCT 1494 consensus_2902#1 AG--TTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCT 174 * ******************************************************** consensus_2902#0 GACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACG 1554 consensus_2902#1 GACGACGACGGTGGACATGTCTGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACG 234 ************************************************************ consensus_2902#0 ACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGC 1614 consensus_2902#1 ACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTAGAGGGTCGATGAAGCAGGC 294 ************************************************************ consensus_2902#0 CTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGC 1674 consensus_2902#1 CTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGC 354 ************************************************************ consensus_2902#0 GGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAA 1734 consensus_2902#1 GGGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAA 414 ************************************************************ consensus_2902#0 GCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGC 1794 consensus_2902#1 GCGACTGTGAAGGAGCGGGTCGTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGC 474 ************************************************************ consensus_2902#0 GTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCC 1854 consensus_2902#1 GTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCCGCCATGTGCGGCACACGCC 534 ************************************************************ consensus_2902#0 CAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTC 1914 consensus_2902#1 CAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTC 594 ************************************************************ consensus_2902#0 GTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTC 1974 consensus_2902#1 GTCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTC 654 ************************************************************ consensus_2902#0 GCCGCCGCGGCCTGCAATTGCAACGGTTGAATTCTCGCACGCGCGCGGGA---------- 2024 consensus_2902#1 GCCGCCGCGGCCTGACACGCTCCCCGTCGATCTC-CGCGCCTTCTTCGCAATCTCCATGT 713 ************** * * ** ** ** *** * * * * consensus_2902#0 ------------------------------------------------------------ consensus_2902#1 CAACCGCCCCGGCAACGGGAGCGATCCCGAGCTAAGCGTCCGCAACGCACGATCGGGAAG 773 consensus_2902#0 ------------------------------------------------------------ consensus_2902#1 AACGCAAATGCCGCCTGCGCCGAGCAGCTGGCCTAGCCTGGCTGTGCACGCGGCTGTCGC 833 consensus_2902#0 ------------------------------------------------------------ consensus_2902#1 CGTCGCCGCCGCCGCCGCCGCTACTCCACGACGACGAGCAAGCAGATGAGATTTTGTGGG 893 consensus_2902#0 ------------------------- consensus_2902#1 GGGAGTCTCTCGCTTCCGGTTTGAG 918 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||