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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AAAGTTTAATATGATATATTGATAAGCCATCTTAGAAACAACTTATAATTAGCAATTAAATAAATAAATAAATAAAAACATAAACAAGCTTATACCGTGACAGAACTCTGAGATGAGAGGAGTCAATACTGAAAATTAAAAAGAATAAATCATCTACAAGACCTATAGCTAATTGGCTAATCACTAAACACCTGCTCTTCCTTGCAGCTTGTCTGGCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCGGATGTTAACACCCCTCCGAGCGGCCTTGTTGTTTGCCTTCACGTCCCCACTCCGATTGCCGGAGGTCAGATGCTAGAANGGAATGAGCCGAGGANATAGTGTTTGACCCNTATCTGACTTCCACCAGAAAAGTTGGTGANAAAACGAACTGCTGAAGAAGAAGCCCCACAACTGAATGCTGACAAANNNNNNNNNNNNNNNNGAAAGGAAGATTCCACCCCAAANCTTGTCCTCCAGGCTGTCAACCCACCTNGTTTCTGGCNCATGGCCGTATTGTCNNGTACNTGTGAANGCTTTGCTTTNAGCAGNATACCCTTAANCCTGATAATGGANACCG]
[+] EMBL BE229118 [AAAGTTTAATATGATATATTGATAAGCCATCTTAGAAACAACTTATAATTAGCAATTAAATAAATAAATAAATAAAAACATAAACAAGCTTATACCGTGACAGAACTCTGAGATGAGAGGAGTCAATACTGAAAATTAAAAAGAATAAATCATCTACAAGACCTATAGCTAATTGGCTAATCACTAAACACCTGCTCTTCCTTGCAGCTTGTCTGGCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCGGATGTTAACACCCCTCCGAGCGGCCTTGTTGTTTGCCTTCACGTCCCCACTCCGATTGCCGGAGGTCAGATGCTAGAANGGAATGAGCCGAGGANATAGTGTTTGACCCNTATCTGACTTCCACCAGAAAAGTTGGTGANAAAACGAACTGCTGAAGAAGAAGCCCCACAACTGAATGCTGACAAANNNNNNNNNNNNNNNNGAAAGGAAGATTCCACCCCAAANCTTGTCCTCCAGGCTGTCAACCCACCTNGTTTCTGGCNCATGGCCGTATTGTCNNGTACNTGTGAANGCTTTGCTTTNAGCAGNATACCCTTAANCCTGATAATGGANACCG]
consensusID : consensus_2913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[CTGCCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCCGGATGTAACACCCCTCCGAGCGGCCCTTGTTGTTTGCCTTCACGTCGCCACTCGATTGCCGGAGGTCAGATGCTAGGAAGGGAATGAGCCAGAGGAGATAGTGTTAGACCCTTATCTGACGTCAACCAGGAAGATGTTGGTGAGAAGACTGAAGCTGCTGAGGAGGAGGCGCCAACAGAGCTGAGTGCTGAAGCTGAGCAAGAAGCAGAGCAAAGAGGAGAGGAGGACTTCAAGCTCAAGAAGCATTGCTCATCAAGGCCTGTCAAACCCAACCCTATGTATCATGGGCCACAGTGGGCCGTGTAAGTCTGTCCGTGGTAACAGCTGGTTGACAGCTGGCGTGTGTGGCGTGTAGAGGCGAGGCGATGAGCCACATATAAGAACTCGTGATGAACTAGGATGAACTCGGCTTTTGGCACCTGGTGGCGAAGGCGGCGGCAGGCACATCCTGTTGGATTGGTGCATATTATTTCAGTGATTGGTTGCCATATCAAAAAAAA]
[+] EMBL BI800234 [CTGCCTGCCCACATGCAGCCACAACGCCTGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCCGGATGTAACACCCCTCCGAGCGGCCCTTGTTGTTTGCCTTCACGTCGCCACTCGATTGCCGGAGGTCAGATGCTAGGAAGGGAATGAGCCAGAGGAGATAGTGTTAGACCCTTATCTGACGTCAACCAGGAAGATGTTGGTGAGAAGACTGAAGCTGCTGAGGAGGAGGCGCCAACAGAGCTGAGTGCTGAAGCTGAGCAAGAAGCAGAGCAAAGAGGAGAGGAGGACTTCAAGCTCAAGAAGCATTGCTCATCAAGGCCTGTCAAACCCAACCCTATGTATCATGGGCCACAGTGGGCCGTGTAAGTCTGTCCGTGGTAACAGCTGGTTGACAGCTGGCGTGTGTGGCGTGTAGAGGCGAGGCGATGAGCCACATATAAGAACTCGTGATGAACTAGGATGAACTCGGCTTTTGGCACCTGGTGGCGAAGGCGGCGGCAGGCACATCCTGTTGGATTGGTGCATATTATTTCAGTGATTGGTTGCCATATCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2913#0 AAAGTTTAATATGATATATTGATAAGCCATCTTAGAAACAACTTATAATTAGCAATTAAA 60
consensus_2913#1 ------------------------------------------------------------
consensus_2913#0 TAAATAAATAAATAAAAACATAAACAAGCTTATACCGTGACAGAACTCTGAGATGAGAGG 120
consensus_2913#1 ------------------------------------------------------------
consensus_2913#0 AGTCAATACTGAAAATTAAAAAGAATAAATCATCTACAAGACCTATAGCTAATTGGCTAA 180
consensus_2913#1 ------------------------------------------------------------
consensus_2913#0 TCACTAAACACCTGCTCTTCCTTGCAGCTTGTCTGGCTGCCCACATGCAGCCACAACGCC 240
consensus_2913#1 --------------------------------CTGCCTGCCCACATGCAGCCACAACGCC 28
*** ************************
consensus_2913#0 TGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCGGATGTTAACACCCCTCCGAGCGGCC- 299
consensus_2913#1 TGCCGCCGTTCGCCGCACTTGCACTCCGGCGCCCGGATGTAACACCCCTCCGAGCGGCCC 88
********************************* * ********************
consensus_2913#0 TTGTTGTTTGCCTTCACGTCCCCACTCCGATTGCCGGAGGTCAGATGCTAG-AANGGAAT 358
consensus_2913#1 TTGTTGTTTGCCTTCACGTCGCCACTC-GATTGCCGGAGGTCAGATGCTAGGAAGGGAAT 147
******************** ****** *********************** ** *****
consensus_2913#0 GAGCC-GAGGANATAGTGTTTGACCCNTATCTGACTTCCACCAGAAAA--GTTGGTGANA 415
consensus_2913#1 GAGCCAGAGGAGATAGTGTTAGACCCTTATCTGACGTCAACCAGGAAGATGTTGGTGAGA 207
***** ***** ******** ***** ******** ** ***** ** ******** *
consensus_2913#0 AAAC--GAACTGCTGAAGAAGAAGCCCCAC---AACTGAATGCTGACA------AANNNN 464
consensus_2913#1 AGACTGAAGCTGCTGAGGAGGAGGCGCCAACAGAGCTGAGTGCTGAAGCTGAGCAAGAAG 267
* ** * ******* ** ** ** *** * **** ****** **
consensus_2913#0 NNNNNNNNNNNNGAAAGGAAGATTCCACCCC----AAANCTTGTCCTCCAGG--CTGTCA 518
consensus_2913#1 CAGAGCAAAGAGGAGAGGAGGACTTCAAGCTCAAGAAGCATTGCTCATCAAGGCCTGTCA 327
** **** ** * ** * ** *** * ** * ******
consensus_2913#0 ACCC--ACCTNGT---TTCTGGCNCAT----GGCCGTATTGTCNNGTACNTGTGAANGCT 569
consensus_2913#1 AACCCAACCCTATGTATCATGGGCCACAGTGGGCCGTGTAAGTCTGTCCGTGGTAACAGC 387
* ** *** * * *** ** ****** * ** * ** **
consensus_2913#0 TTGCTTTNAGCAGNATACCCTTAANCCTGATAATGGANACCG------------------ 611
consensus_2913#1 TGGTTGACAGCTGG-CGTGTGTGGCGTGTAGAGGCGAGGCGATGAGCCACATATAAGAAC 446
* * * *** * * * * ** *
consensus_2913#0 ------------------------------------------------------------
consensus_2913#1 TCGTGATGAACTAGGATGAACTCGGCTTTTGGCACCTGGTGGCGAAGGCGGCGGCAGGCA 506
consensus_2913#0 --------------------------------------------------------
consensus_2913#1 CATCCTGTTGGATTGGTGCATATTATTTCAGTGATTGGTTGCCATATCAAAAAAAA 562
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||