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Oryza sativa
cluster # 2918 cluster # 2918       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2918#0 length = 1063 sequences # 1  
consensus_2918#1 length = 798 sequences # 1  

consensusID : consensus_2918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1063
fasta sequence
                              [TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAAATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATACTAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATCTTCAAGAACAGAAAGCTTAGGATGCAACAGTATTTTCGTCAACAGGAACTATGACATGGATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAAAGCCTTATTGGTGGGTGCATTGAAGTGGACTCTATAAACGGAATCGAGAGCCACAAAATGCTGAAGGTCCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAGTAATGGCACCAAAGATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAGGACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCAACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGAATGCGAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG]

[+] EMBL AK070454             [TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAAATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATACTAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATCTTCAAGAACAGAAAGCTTAGGATGCAACAGTATTTTCGTCAACAGGAACTATGACATGGATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAAAGCCTTATTGGTGGGTGCATTGAAGTGGACTCTATAAACGGAATCGAGAGCCACAAAATGCTGAAGGTCCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAGTAATGGCACCAAAGATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAGGACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCAACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGAATGCGAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG]


>consensus_2918#0 TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCC GATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGC GGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAA ATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATAC TAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATC TTCAAGAACAGAAAGCTTAGGATGCAACAGTATTTTCGTCAACAGGAACTATGACATGGA TATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAAAGCCTTATTGGTGG GTGCATTGAAGTGGACTCTATAAACGGAATCGAGAGCCACAAAATGCTGAAGGTCCAGGC ATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAG TAATGGCACCAAAGATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGG TCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAGGACAATA TGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTGGTGT CATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCA GAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTT TACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCAACATCGGA AGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGAATGC GAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGT ATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG



consensusID : consensus_2918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 798
fasta sequence
                              [TAAAGTGGTGCATACATAATATGGGTGGTACAAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACATACGAAGTTTCGATTTCTCATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGAAAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTGCGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGCCCAGGGGTCTTCCGACTAGTTTCACAAGATGATGGGCTAGACGACTTGGATATGTTATTGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACCGAACAAGCCCATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGGACAGGAAGCGGAGAGCCGATAGGGAGGAGTCAGAGAGAGGGGTTGTTGTCCCTTCCCTTCATCAGTGAGCTGAGCCTGAGCCCCCGCTACATGTGGTTCCTTCCGCCTGTAAAATAACGACATATAGTATGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCTTCTGCTGGTAGCTCTACATGNC]

[+] EMBL CA764493             [TAAAGTGGTGCATACATAATATGGGTGGTACAAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACATACGAAGTTTCGATTTCTCATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGAAAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTGCGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGCCCAGGGGTCTTCCGACTAGTTTCACAAGATGATGGGCTAGACGACTTGGATATGTTATTGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACCGAACAAGCCCATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGGACAGGAAGCGGAGAGCCGATAGGGAGGAGTCAGAGAGAGGGGTTGTTGTCCCTTCCCTTCATCAGTGAGCTGAGCCTGAGCCCCCGCTACATGTGGTTCCTTCCGCCTGTAAAATAACGACATATAGTATGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCTTCTGCTGGTAGCTCTACATGNC]


>consensus_2918#1 TAAAGTGGTGCATACATAATATGGGTGGTACAAGTATAAATTTAGGGTATCTTTGATTTG TAAAAAAAACATACGAAGTTTCGATTTCTCATTTTTGCGATTGAATTTAGGGTATATATG ATTTCTCCGTTTTCTTATTCTTGCAATTGAAAGGGGTTAAGAGGATCCTTTTGTTTCCTA TCGCTGGCTTGATCGGATCAGCTTTATTGCGGCTACACAGCCGCAACACCGCAACAACTC CAATTCAAAATATGTTATTGGAGAAAGGCCCAGGGGTCTTCCGACTAGTTTCACAAGATG ATGGGCTAGACGACTTGGATATGTTATTGATACTGCAGATGCAGCACAGTTACAGCCGCA GCCAGCTATACCGAACAAGCCCATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCA CACTCCACAGAGAATCCCCTGGACAGGAAGCGGAGAGCCGATAGGGAGGAGTCAGAGAGA GGGGTTGTTGTCCCTTCCCTTCATCAGTGAGCTGAGCCTGAGCCCCCGCTACATGTGGTT CCTTCCGCCTGTAAAATAACGACATATAGTATGTGCCTGCCTGCCCCTCGCCATCCCCAT TTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCG GCGGCAAGATGATGGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGC ACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCTTCTG CTGGTAGCTCTACATGNC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2918#0      TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCC 60
consensus_2918#1      ------------------------------------------------------------
                                                                                  

consensus_2918#0      GATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGC 120
consensus_2918#1      ------------------------------------------------------------
                                                                                  

consensus_2918#0      GGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAA 180
consensus_2918#1      ------------------------------------------------------------
                                                                                  

consensus_2918#0      ATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATAC 240
consensus_2918#1      -----------------------------TAAAGTGGTGCATACATAATATGGGTGGTAC 31
                                                    ** *  **      ** *  ** *** ***

consensus_2918#0      TAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATC 300
consensus_2918#1      AAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACA-TACGAAGTTTCGATTTCTC 90
                       **  *    * *  * *       ***   ** * *  *    *       ***   **

consensus_2918#0      TTCAAGAACAGAAAGCTTAGGATGCA-ACAGTATTTTCGTCAACAGGAACTATGACATGG 359
consensus_2918#1      ATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGA 150
                       *       *   *  ***** *  * *   * * * ***   *     **   *  ** 

consensus_2918#0      ATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAA--AGCCTTATTGG 417
consensus_2918#1      AAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTG- 209
                      *   *** ** **  *       **      *  ** *   * *  *  *** ****** 

consensus_2918#0      TGGGTGCATTGAAGTGG-ACTCTATAAACG--GAATCGAGAGCCACAAAATGCTGAAGGT 474
consensus_2918#1      CGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGC 269
                       ** * **  *  *    **   *  ***    * ** * *      *   *   **** 

consensus_2918#0      CCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTC 534
consensus_2918#1      CCAGGGGTCTTC--CGACTAGTTTCA-CAA-GATGATGGGCTAGACGACTTGGATATGTT 325
                      *****  * ***  * *  ** *  * ***  *   *      ** * ***   *   * 

consensus_2918#0      CCGTAGTAATGGCACCAAAG-ATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATC 593
consensus_2918#1      AT-TGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACC--GAACAAGCCC 382
                         *  ** **       ** * * * ****  *      **   ***  **  * *  *

consensus_2918#0      ACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAG 653
consensus_2918#1      ATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGG 442
                      * *     **   **  * *****  * *  *     * *     ** *  **   ** *

consensus_2918#0      G-ACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCT 712
consensus_2918#1      ACAGGAAGCGGAGAGCCGAT-AGGGAGGAGTCAGAGAGAGGGGTTGTTG-----TCCCTT 496
                        *  *   *  *     ** *   * **   ** *** ** * *****     **   *

consensus_2918#0      GCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCA 772
consensus_2918#1      CCCTTCATCAGTGAGCTGAGCCTGAGCCCC--CGCTACATGTGGTTCCTTCCGCCTGTAA 554
                       *     ***  **   **  **   * *    *  * *   * **   **    **  *

consensus_2918#0      AGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAG 832
consensus_2918#1      A------ATAACGACATATAGTATGTGCCTGCCTGCCCCTCG--CCATCCCCATTTCCTC 606
                      *      * **   ***  *  * * *         *   **  * ***   * **    

consensus_2918#0      CAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCA 892
consensus_2918#1      CACCTTCCTACTACAGC--TGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGG-CG 663
                      **   *  *** *      ******   ** *** *   *   *   ** ** * *  * 

consensus_2918#0      ACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGA 952
consensus_2918#1      GCA--AGATGATGGGT-GAAGGCGGCGG-CGGCGGCGGAGTCGGCTTCTACCA---ACGA 716
                       **   ** ** *  * *    * ** * * * *   ** * *   *   **    ****

consensus_2918#0      GCGAATGC-GAGTGTTAGCTGCTA--TAGGAG--CTAGGTGCCTATTTTTGTACATCTTC 1007
consensus_2918#1      ACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCT 776
                       ** *  * ***  * *** ***   *** **  **  *     ** ***   * **   

consensus_2918#0      TTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG 1063
consensus_2918#1      TCTGCTGGTAGCTCTACATGNC---------------------------------- 798
                      *   *** **  * ** *** *                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)