These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1063 fasta sequence [TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAAATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATACTAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATCTTCAAGAACAGAAAGCTTAGGATGCAACAGTATTTTCGTCAACAGGAACTATGACATGGATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAAAGCCTTATTGGTGGGTGCATTGAAGTGGACTCTATAAACGGAATCGAGAGCCACAAAATGCTGAAGGTCCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAGTAATGGCACCAAAGATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAGGACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCAACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGAATGCGAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG] [+] EMBL AK070454 [TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAAATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATACTAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATCTTCAAGAACAGAAAGCTTAGGATGCAACAGTATTTTCGTCAACAGGAACTATGACATGGATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAAAGCCTTATTGGTGGGTGCATTGAAGTGGACTCTATAAACGGAATCGAGAGCCACAAAATGCTGAAGGTCCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAGTAATGGCACCAAAGATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAGGACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCAACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGAATGCGAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG] consensusID : consensus_2918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence [TAAAGTGGTGCATACATAATATGGGTGGTACAAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACATACGAAGTTTCGATTTCTCATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGAAAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTGCGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGCCCAGGGGTCTTCCGACTAGTTTCACAAGATGATGGGCTAGACGACTTGGATATGTTATTGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACCGAACAAGCCCATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGGACAGGAAGCGGAGAGCCGATAGGGAGGAGTCAGAGAGAGGGGTTGTTGTCCCTTCCCTTCATCAGTGAGCTGAGCCTGAGCCCCCGCTACATGTGGTTCCTTCCGCCTGTAAAATAACGACATATAGTATGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCTTCTGCTGGTAGCTCTACATGNC] [+] EMBL CA764493 [TAAAGTGGTGCATACATAATATGGGTGGTACAAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACATACGAAGTTTCGATTTCTCATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGAAAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTGCGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGCCCAGGGGTCTTCCGACTAGTTTCACAAGATGATGGGCTAGACGACTTGGATATGTTATTGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACCGAACAAGCCCATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGGACAGGAAGCGGAGAGCCGATAGGGAGGAGTCAGAGAGAGGGGTTGTTGTCCCTTCCCTTCATCAGTGAGCTGAGCCTGAGCCCCCGCTACATGTGGTTCCTTCCGCCTGTAAAATAACGACATATAGTATGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGGTGAAGGCGGCGGCGGCGGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCTTCTGCTGGTAGCTCTACATGNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2918#0 TGTGCCTGCCTGCCCCTCGCCATCCCCATTTCCTCCACCTTCCTACTACAGCTGCTTTCC 60 consensus_2918#1 ------------------------------------------------------------ consensus_2918#0 GATGGATCACAGCGGCAGCGTCAGCGCCGGCGGCAAGATGATGGTGAAGGCGGCGGCGGC 120 consensus_2918#1 ------------------------------------------------------------ consensus_2918#0 GGCGGAGTCGGCTTCTACCAACGAACGCACCCAGAGCTTCAGCGGCTGCAATTCAGAGAA 180 consensus_2918#1 ------------------------------------------------------------ consensus_2918#0 ATTTTACCATATCGAAAGCCCTCATAAGAAAAGGAAGTCTCAGTATGAGCTGAGTGATAC 240 consensus_2918#1 -----------------------------TAAAGTGGTGCATACATAATATGGGTGGTAC 31 ** * ** ** * ** *** *** consensus_2918#0 TAGGGTTTCATCACTGAAGTACAAGTTTCGGAACAGATTAGCTTGGCAGGAAGATGAATC 300 consensus_2918#1 AAGTATAAATTTAGGGTATCTTTGATTTGTAAAAAAAACA-TACGAAGTTTCGATTTCTC 90 ** * * * * * *** ** * * * * *** ** consensus_2918#0 TTCAAGAACAGAAAGCTTAGGATGCA-ACAGTATTTTCGTCAACAGGAACTATGACATGG 359 consensus_2918#1 ATTTTTGCGATTGAATTTAGGGTATATATGATTTCTCCGTTTTCTTATTCTTGCAATTGA 150 * * * ***** * * * * * * *** * ** * ** consensus_2918#0 ATATGGTGAACAGAGTTGAAGAATTGGAGTCCTGTGACAACACCCAA--AGCCTTATTGG 417 consensus_2918#1 AAGGGGTTAAGAGGATCCTTTTGTTTCCTATCGCTGGCTTGATCGGATCAGCTTTATTG- 209 * *** ** ** * ** * ** * * * * *** ****** consensus_2918#0 TGGGTGCATTGAAGTGG-ACTCTATAAACG--GAATCGAGAGCCACAAAATGCTGAAGGT 474 consensus_2918#1 CGGCTACACAGCCGCAACACCGCAACAACTCCAATTCAAAATATGTTATTGGAGAAAGGC 269 ** * ** * * ** * *** * ** * * * * **** consensus_2918#0 CCAGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTC 534 consensus_2918#1 CCAGGGGTCTTC--CGACTAGTTTCA-CAA-GATGATGGGCTAGACGACTTGGATATGTT 325 ***** * *** * * ** * * *** * * ** * *** * * consensus_2918#0 CCGTAGTAATGGCACCAAAG-ATACTGACAGTTGGGATATGCAGCACCTGGAGTATGATC 593 consensus_2918#1 AT-TGATACTGCAGATGCAGCACAGTTACAGCCGCAGCCAGCTATACC--GAACAAGCCC 382 * ** ** ** * * * **** * ** *** ** * * * consensus_2918#0 ACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGAGGCATACGATGTACTAG 653 consensus_2918#1 ATCAGTTCCTTTGGCACCAACCATCAGTTCCTTTGGCACACTCCACAGAGAATCCCCTGG 442 * * ** ** * ***** * * * * * ** * ** ** * consensus_2918#0 G-ACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCT 712 consensus_2918#1 ACAGGAAGCGGAGAGCCGAT-AGGGAGGAGTCAGAGAGAGGGGTTGTTG-----TCCCTT 496 * * * * ** * * ** ** *** ** * ***** ** * consensus_2918#0 GCTGGTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCA 772 consensus_2918#1 CCCTTCATCAGTGAGCTGAGCCTGAGCCCC--CGCTACATGTGGTTCCTTCCGCCTGTAA 554 * *** ** ** ** * * * * * * ** ** ** * consensus_2918#0 AGAGGCCAGAATAGCATTCATGACGAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAG 832 consensus_2918#1 A------ATAACGACATATAGTATGTGCCTGCCTGCCCCTCG--CCATCCCCATTTCCTC 606 * * ** *** * * * * * ** * *** * ** consensus_2918#0 CAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAAATCTCCGCTCTGTTCA 892 consensus_2918#1 CACCTTCCTACTACAGC--TGCTTTCCGATGGATCACAGCGGCAGCGTCAGCGCCGG-CG 663 ** * *** * ****** ** *** * * * ** ** * * * consensus_2918#0 ACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGA 952 consensus_2918#1 GCA--AGATGATGGGT-GAAGGCGGCGG-CGGCGGCGGAGTCGGCTTCTACCA---ACGA 716 ** ** ** * * * * ** * * * * ** * * * ** **** consensus_2918#0 GCGAATGC-GAGTGTTAGCTGCTA--TAGGAG--CTAGGTGCCTATTTTTGTACATCTTC 1007 consensus_2918#1 ACGCACCCAGAGCTTCAGCGGCTGGTTAGTAGTACTCAGAATACATCTTTCCCCCTCGCT 776 ** * * *** * *** *** *** ** ** * ** *** * ** consensus_2918#0 TTCACTGCTATGTATATATGTCTTCTGAGTTCTGAACGGACTAATGTACTCCTCTG 1063 consensus_2918#1 TCTGCTGGTAGCTCTACATGNC---------------------------------- 798 * *** ** * ** *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||