These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [TGTGGCTTTCTAGTTCTTGGGCCACTGTTTTGTTTTTCCACATAGCAAGCTTGTATAGGGAAGGAGATAGATCTTTGGGGGATTGGCCATCAAGCCATCTGTCGTGCCAGAACTTTGTCTTGCCCCCATTGCCTAGTGTGATGATTGTAGAGGCCCTGAAGAGTTGCTTGTCCGTTTCATCGCATGGTAGGGTGGAGCCTTGCCATGGTTTCTGAAAGGACCTTAATGTCGCCTAGAGGGGGGGTGAATAGGTGTTCCTAAAAATTATCACAACTTCATAGCACATTAGAGTGATGATAACTTTTGATTCAAATCGAAACTTCCGGTATGGGATTGGAAGTTCCGGTCTCAATCGAAAAGTTCGGCGGATAACGGAATAAACACTAGCTATGAACTTGTAGCTCAAACAAACAAAATGTATATGAATCAAAAGGTGACAAATAAGGTATCTAAGCAAGATATAAGGTCACCAACTAAATCAAATAAGCATGCAAGTAGATCGGGTAAAAACAAGCTCAAGCACAATATGAGAGAATGCAAGAACGGGCAAACCAAGAGGGGAGACGCGCGATTTGTTTCCCGAAGTTCGAATCCACGGATCCTACGTCTCCGTTGAGGAGCCACAAGGGCCGGGCCTATTTCAACCCTTTTCTCACGAGGTTGCACAAATGCACTCCTCGGTTTCACTCTTGATTTCTTCCCTTGCGGAGGCGAAATCGAAGCCTTCACAAACTTTCCGTGGCACACCACAACCTTGGGTGCTCACCGGCAACGCCTAGCCGTCTAGGAGACCTTAGTCCCCAGAGTAACAAACACAATCGAAGAT] [+] EMBL CB649495 [TGTGGCTTTCTAGTTCTTGGGCCACTGTTTTGTTTTTCCACATAGCAAGCTTGTATAGGGAAGGAGATAGATCTTTGGGGGATTGGCCATCAAGCCATCTGTCGTGCCAGAACTTTGTCTTGCCCCCATTGCCTAGTGTGATGATTGTAGAGGCCCTGAAGAGTTGCTTGTCCGTTTCATCGCATGGTAGGGTGGAGCCTTGCCATGGTTTCTGAAAGGACCTTAATGTCGCCTAGAGGGGGGGTGAATAGGTGTTCCTAAAAATTATCACAACTTCATAGCACATTAGAGTGATGATAACTTTTGATTCAAATCGAAACTTCCGGTATGGGATTGGAAGTTCCGGTCTCAATCGAAAAGTTCGGCGGATAACGGAATAAACACTAGCTATGAACTTGTAGCTCAAACAAACAAAATGTATATGAATCAAAAGGTGACAAATAAGGTATCTAAGCAAGATATAAGGTCACCAACTAAATCAAATAAGCATGCAAGTAGATCGGGTAAAAACAAGCTCAAGCACAATATGAGAGAATGCAAGAACGGGCAAACCAAGAGGGGAGACGCGCGATTTGTTTCCCGAAGTTCGAATCCACGGATCCTACGTCTCCGTTGAGGAGCCACAAGGGCCGGGCCTATTTCAACCCTTTTCTCACGAGGTTGCACAAATGCACTCCTCGGTTTCACTCTTGATTTCTTCCCTTGCGGAGGCGAAATCGAAGCCTTCACAAACTTTCCGTGGCACACCACAACCTTGGGTGCTCACCGGCAACGCCTAGCCGTCTAGGAGACCTTAGTCCCCAGAGTAACAAACACAATCGAAGAT] consensusID : consensus_292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [TCCTTTTTTCCCTCCTCCCTCTCTCCCCACCACCACTTCTTCTCTACCCGGCGGCGCCAATCCGAGCCGCACTGCTCCTCCTCTCCTCCCTCAACCCCCGCCACCACTCCTGCTTCTCCTCCTCCGCGTCACACCGGATCCGGCCGCTTGGAGGTCGGGGCCGCCAGATCCAGCCACCACGCGCGGCAGCAGCGCCCCTCCTCCTTTGCGTCACGCCGGATCCGGCCACCACGTGCAGCAGCAGCTCCTCCTCCGGCCTTCTTCCGGCAGCAGCACCACGGCAACAGCTCCTCCTCTGGTCTTCCTCCAGCAGCAGTGCAAAGCCAAGGTCTGCATGGTGGGGTTCTAAATGGGGTTGGGAAGGGCGTGGAGACGAACACCGCCAAGGTGGAGGAGGCAGTCGGCGACGACCTCCAAGGGCTCCTCCTAAAGGAATAAAACGCTAGCTATGAACTTGTAGCTTGAACAAACAAAATGTATATGAATCAAAAGGTCACAAACAAGGTA] [+] EMBL AK105177 [TCCTTTTTTCCCTCCTCCCTCTCTCCCCACCACCACTTCTTCTCTACCCGGCGGCGCCAATCCGAGCCGCACTGCTCCTCCTCTCCTCCCTCAACCCCCGCCACCACTCCTGCTTCTCCTCCTCCGCGTCACACCGGATCCGGCCGCTTGGAGGTCGGGGCCGCCAGATCCAGCCACCACGCGCGGCAGCAGCGCCCCTCCTCCTTTGCGTCACGCCGGATCCGGCCACCACGTGCAGCAGCAGCTCCTCCTCCGGCCTTCTTCCGGCAGCAGCACCACGGCAACAGCTCCTCCTCTGGTCTTCCTCCAGCAGCAGTGCAAAGCCAAGGTCTGCATGGTGGGGTTCTAAATGGGGTTGGGAAGGGCGTGGAGACGAACACCGCCAAGGTGGAGGAGGCAGTCGGCGACGACCTCCAAGGGCTCCTCCTAAAGGAATAAAACGCTAGCTATGAACTTGTAGCTTGAACAAACAAAATGTATATGAATCAAAAGGTCACAAACAAGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_292#0 TGTGGCTTTCTAGTTCTTGGGCCACTGTTTTGTTTTTCCACATAGCAAG--CTTGTATAG 58 consensus_292#1 -------------TCCTTTTTTCCCTCCTCCCTCTCTCCCCACCACCACTTCTTCTCTAC 47 * *** * ** * * * *** ** * * *** * ** consensus_292#0 GGAAGGAGATAGATCTTTGGGGGATTGGCCATCAAGCCATCTGTCGTGCCAGAACTTTG- 117 consensus_292#1 CCGGCGGCGCCAATCCGAGCCGCACTGCTCCTCCTCTCCTCCCTCAACCCCCGCCACCAC 107 * *** * * * ** * ** * ** ** ** * consensus_292#0 TCTTGCCCCCATTGCCTAGTGTGATGATTGTAGAGGCCCTGAAGAGTTGCTTGTCCGTTT 177 consensus_292#1 TCCTGCTTCTCCTCCTCCGCGTCACACCGGATCCGGCCGCTTGGAGGT-CGGGGCCGCCA 166 ** *** * * * * ** * * **** *** * * * *** consensus_292#0 CATCGCATGGTAGGGTGGAGCCTTGCCATGGTTTCTGAAAGGACCTTAATGTCGCCTAGA 237 consensus_292#1 GATCCAGCCACCACGCGCGGCAGCAGCGCCCCTCCT-------CCTTTGCGTCACGCCG- 218 *** * * ** * * ** **** *** * * consensus_292#0 GGGGGGGTGAATAGGTGTTCCTAAAAATTATCAC---AACTTCATAGCACATTAGAGTGA 294 consensus_292#1 GATCCGGCCACCACGTGCAGCAGCAGCTCCTCCTCCGGCCTTCTTCCGGCAGCAGCACCA 278 * ** * * *** * * * ** **** * ** ** * consensus_292#0 TGATAACTTTTGATTCAAATCGAAACTTCCGGTATGGGATTGGAAGTTCCGGTCTCAATC 354 consensus_292#1 CGGCAACAGCTCCTCCTCTGGTCTTCCTCCAGCA-GCAGTGCAAAGCCAAGGTCTGCATG 337 * *** * * * * *** * * * * *** ***** ** consensus_292#0 GAAAAGTTCGGCGGATAACGGAATAAACACTAGCTATGAAC-TTGT--AGCTCAAACAAA 411 consensus_292#1 GTGGGGTTCTAAATGGGGTTGGGAAGGGCGTGGAGACGAACACCGCCAAGGTGGAGGAGG 397 * **** * * * * * **** * ** * * * consensus_292#0 CAAAATGTATATGAATCAAAAGGTGACAAATAAGGTATCTAAGCA--AGATATAAGGTCA 469 consensus_292#1 CAGTCGGCGACGACCTCCAAGGGCTCCTCCTAAAGGAATAAAACGCTAGCTATGAACTTG 457 ** * ** ** ** * *** * * ** * ** *** * * consensus_292#0 CCAACTAAATCAAATAAGCATGCAAGTAGATCGGGTAAAAACAAGCTCAAGCACAATATG 529 consensus_292#1 T-AGCTTGAACAAACAAA-ATGTATATGAATCAAAAGGTCACAAACA-AGGTA------- 507 * ** * **** ** *** * * *** **** * * * * consensus_292#0 AGAGAATGCAAGAACGGGCAAACCAAGAGGGGAGACGCGCGATTTGTTTCCCGAAGTTCG 589 consensus_292#1 ------------------------------------------------------------ consensus_292#0 AATCCACGGATCCTACGTCTCCGTTGAGGAGCCACAAGGGCCGGGCCTATTTCAACCCTT 649 consensus_292#1 ------------------------------------------------------------ consensus_292#0 TTCTCACGAGGTTGCACAAATGCACTCCTCGGTTTCACTCTTGATTTCTTCCCTTGCGGA 709 consensus_292#1 ------------------------------------------------------------ consensus_292#0 GGCGAAATCGAAGCCTTCACAAACTTTCCGTGGCACACCACAACCTTGGGTGCTCACCGG 769 consensus_292#1 ------------------------------------------------------------ consensus_292#0 CAACGCCTAGCCGTCTAGGAGACCTTAGTCCCCAGAGTAACAAACACAATCGAAGAT 826 consensus_292#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||