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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1135 fasta sequence
[ATCAACACCGCCTGACTCATCCAGTGTGAGGCCGTGAGGGTGAGTGAACCCTGTAGCGGCAGTCATGAAGGAGAGGGTGAGGCGGCGGCGCATCCCGGCGTTCGGGGAGTGGAACTACGACGGCGACGGCGACCTTGGCGGTGGCGGCGGCTGCTATGGCTACGGCTACCGCGACGGCGACTGGCCGGTCACACAGTACTTCGACTCCGCCATGCAGGCCCGCGGCCTGGTCATCTCCCTGCCGCCCTCACCAAAACCACCCAAGAAGGCGGTGAAGTGGATTGACAGCGGCGCACTTGGGGAGGAGGAGGTGGTGGACGAGAAGCAGAGGCAGAGGCAGCACAAGGTGGTGGTGGGGCTGGCGGTGGCAGGAGGAGAGCACGGGGCGGCGAGGAAGCAGGGGAAGCAGAGCAGAGTGGCTGACGGCGGGGCCCATGCGGCGATGGGCTACAAGGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACCAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCCCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTCTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGTTGATGTAATGGAACGCTGTAGTCTCAGCTCAGGGGACTTGTGCCGCCCGTGGTGAAAAGAAAGAAAGGAAGAAAG]
[+] EMBL AK106317 [ATCAACACCGCCTGACTCATCCAGTGTGAGGCCGTGAGGGTGAGTGAACCCTGTAGCGGCAGTCATGAAGGAGAGGGTGAGGCGGCGGCGCATCCCGGCGTTCGGGGAGTGGAACTACGACGGCGACGGCGACCTTGGCGGTGGCGGCGGCTGCTATGGCTACGGCTACCGCGACGGCGACTGGCCGGTCACACAGTACTTCGACTCCGCCATGCAGGCCCGCGGCCTGGTCATCTCCCTGCCGCCCTCACCAAAACCACCCAAGAAGGCGGTGAAGTGGATTGACAGCGGCGCACTTGGGGAGGAGGAGGTGGTGGACGAGAAGCAGAGGCAGAGGCAGCACAAGGTGGTGGTGGGGCTGGCGGTGGCAGGAGGAGAGCACGGGGCGGCGAGGAAGCAGGGGAAGCAGAGCAGAGTGGCTGACGGCGGGGCCCATGCGGCGATGGGCTACAAGGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACCAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCCCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTCTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGTTGATGTAATGGAACGCTGTAGTCTCAGCTCAGGGGACTTGTGCCGCCCGTGGTGAAAAGAAAGAAAGGAAGAAAG]
consensusID : consensus_2925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[GGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACGAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCTCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTTTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGAAATGTGGTTATATGGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGNTGATGTAATGGAACGCTGTAGTCTCAGCTCAAGGGACTTGNGCCGNCCGNGGTGAAAAGAAAGAAAGGAAGAAGCTTTCTGGT]
[+] EMBL CA764533 [GGGGTGCAGGCCGGCGGTGGTCAAGGCCGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAGGGTGACGAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCACCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAGTGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGCACGGCCCAAACTTTCCCATTCATCTATCTCTCTCACCTGTCTCAGCAGCACTAGTGTTTGGTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGATGTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTTTCTCTCTCTCTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTGTAGCCTCTGCTTGGTTGGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGAAATGTGGTTATATGGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGNTGATGTAATGGAACGCTGTAGTCTCAGCTCAAGGGACTTGNGCCGNCCGNGGTGAAAAGAAAGAAAGGAAGAAGCTTTCTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2925#0 ATCAACACCGCCTGACTCATCCAGTGTGAGGCCGTGAGGGTGAGTGAACCCTGTAGCGGC 60
consensus_2925#1 ------------------------------------------------------------
consensus_2925#0 AGTCATGAAGGAGAGGGTGAGGCGGCGGCGCATCCCGGCGTTCGGGGAGTGGAACTACGA 120
consensus_2925#1 ------------------------------------------------------------
consensus_2925#0 CGGCGACGGCGACCTTGGCGGTGGCGGCGGCTGCTATGGCTACGGCTACCGCGACGGCGA 180
consensus_2925#1 ------------------------------------------------------------
consensus_2925#0 CTGGCCGGTCACACAGTACTTCGACTCCGCCATGCAGGCCCGCGGCCTGGTCATCTCCCT 240
consensus_2925#1 ------------------------------------------------------------
consensus_2925#0 GCCGCCCTCACCAAAACCACCCAAGAAGGCGGTGAAGTGGATTGACAGCGGCGCACTTGG 300
consensus_2925#1 ------------------------------------------------------------
consensus_2925#0 GGAGGAGGAGGTGGTGGACGAGAAGCAGAGGCAGAGGCAGCACAAGGTGGTGGTGGGGCT 360
consensus_2925#1 ------------------------------------------------------------
consensus_2925#0 GGCGGTGGCAGGAGGAGAGCACGGGGCGGCGAGGAAGCAGGGGAAGCAGAGCAGAGTGGC 420
consensus_2925#1 ------------------------------------------------------------
consensus_2925#0 TGACGGCGGGGCCCATGCGGCGATGGGCTACAAGGGGTGCAGGCCGGCGGTGGTCAAGGC 480
consensus_2925#1 ---------------------------------GGGGTGCAGGCCGGCGGTGGTCAAGGC 27
***************************
consensus_2925#0 CGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAG 540
consensus_2925#1 CGTGGACCGGGACCTCTACGAGATCCCACCCGACATGCTCTGCAACAAGCCAAGGAAGAG 87
************************************************************
consensus_2925#0 GGTGACCAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCA 600
consensus_2925#1 GGTGACGAGGAGCCTGTGGATGGGGTGCCTGGGACTCAGCTGCGTTGCCTAGGGATCTCA 147
****** *****************************************************
consensus_2925#0 CCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAG 660
consensus_2925#1 CCAGATAGATCGATCGATCACACATACCAAACCTGCCTTGTTTTGCGTGTCGTTGTAAAG 207
************************************************************
consensus_2925#0 TGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGC 720
consensus_2925#1 TGAAGCAGAAACCCATGGACGGACCCCATCGTGATCGATGCATGCTGTCACCACGGTCGC 267
************************************************************
consensus_2925#0 ACGGCCCAAACTTTCCCATTCATCTATCTCCCTCACCTGTCTCAGCAGCACTAGTGTTTG 780
consensus_2925#1 ACGGCCCAAACTTTCCCATTCATCTATCTCTCTCACCTGTCTCAGCAGCACTAGTGTTTG 327
****************************** *****************************
consensus_2925#0 GTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGAT 840
consensus_2925#1 GTTGGTGTCTCTCTGTGCGTTTTAGGAGTAGTAGTAAAATGAGATGGACATGGACATGAT 387
************************************************************
consensus_2925#0 GTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTCTCTCTCTCT 900
consensus_2925#1 GTGTCCGGCAGCGTCATTTCCTCGTGCCAAAGACCACTCGAGTGCTGCCTTTCTCTCTCT 447
************************************************** *********
consensus_2925#0 CTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTTTGTAGCCTCTGCTTGGTT 960
consensus_2925#1 CTCTCTCTCCCCTTTTGATCTTTTTCCGATGTGTTTTTTTTT-GTAGCCTCTGCTTGGTT 506
****************************************** *****************
consensus_2925#0 GGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGG---------- 1010
consensus_2925#1 GGTGTCCCATGAAATTACGGAGGCAGCTCGGTGAAATGTGGTTATATGGGAAATGTGGTT 566
**************************************************
consensus_2925#0 --------TTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGTTG 1062
consensus_2925#1 ATATGGGGTTGGTGCCTTGGTGGACACTCGACACTGATGAGTAGCAGTGGAAAAAGGNTG 626
************************************************* **
consensus_2925#0 ATGTAATGGAACGCTGTAGTCTCAGCTCAGGGGACTTGTGCCGCCCGTGGTGAAAAGAAA 1122
consensus_2925#1 ATGTAATGGAACGCTGTAGTCTCAGCTCAAGGGACTTGNGCCGNCCGNGGTGAAAAGAAA 686
***************************** ******** **** *** ************
consensus_2925#0 GAAAGGAAGAAAG-------- 1135
consensus_2925#1 GAAAGGAAGAAGCTTTCTGGT 707
***********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||