These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [TGCNNNNNNNNNCCNNNGAGACGAGCGATACCGTACTCCAGACTCATCGTCTGGCTTTCGCTCANNTCGATAGTTTNNCGCAATGCCAGCATGTCGTATTCGGTATTATTACCTNACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCGTTACCCACTTTCGGCGCGGCATCTGCCAGCATACTAAAGCGNTTGCTTAACACACGCGCTTCGCGGAATACCGNNGTCGCCTGGCTACCGCTGACCTGTTTCAGAGCACTGTTNNNTTCANNNGTCGNNNNNNCGTTCAGGCTGGTAAACAGTTCNNNNNNGGTGTAACCCGCATCCAGTGCTTTCGNNNTGTCATTCACCGNNNNATCTNNNGCCACATCGNNNTNNNC] [+] EMBL CF195771 [TGCNNNNNNNNNCCNNNGAGACGAGCGATACCGTACTCCAGACTCATCGTCTGGCTTTCGCTCANNTCGATAGTTTNNCGCAATGCCAGCATGTCGTATTCGGTATTATTACCTNACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCGTTACCCACTTTCGGCGCGGCATCTGCCAGCATACTAAAGCGNTTGCTTAACACACGCGCTTCGCGGAATACCGNNGTCGCCTGGCTACCGCTGACCTGTTTCAGAGCACTGTTNNNTTCANNNGTCGNNNNNNCGTTCAGGCTGGTAAACAGTTCNNNNNNGGTGTAACCCGCATCCAGTGCTTTCGNNNTGTCATTCACCGNNNNATCTNNNGCCACATCGNNNTNNNC] consensusID : consensus_2938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [TCCCCCGGGTTNNNGCNNNNNNNNNNNATCGAGANNNNNNGATACCGTACTNNNGANNNNNNNNCTGGCTTTCGCTCNNNTNNNNNNNTTTACGCANNGCCAGCATNNNNNNTTCGGNNNTATTACCTAACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCNNTACCCACTTTCGGCGCGGCATCTGCCNGCANACTAAAGCGGCTGCTTNNNNNNNGCGCTTCGCGGAATACCNNNNNCGCCTGGC] [+] EMBL CF195699 [TCCCCCGGGTTNNNGCNNNNNNNNNNNATCGAGANNNNNNGATACCGTACTNNNGANNNNNNNNCTGGCTTTCGCTCNNNTNNNNNNNTTTACGCANNGCCAGCATNNNNNNTTCGGNNNTATTACCTAACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCNNTACCCACTTTCGGCGCGGCATCTGCCNGCANACTAAAGCGGCTGCTTNNNNNNNGCGCTTCGCGGAATACCNNNNNCGCCTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2938#0 -------------TGCNNNNNNNNNCCNNNGAGACGAGCG-ATACCGTACTCCAGACTCA 46 consensus_2938#1 TCCCCCGGGTTNNNGCNNNNNNNNNNNATCGAGANNNNNNGATACCGTACTNNNGANNNN 60 *********** **** ********** ** consensus_2938#0 TCGTCTGGCTTTCGCTCANNTCGATAGTTTNNCGCAATGCCAGCATGTCGTATTCGGTAT 106 consensus_2938#1 NNNNCTGGCTTTCGCTCNNNTNNNNNNNTTTACGCANNGCCAGCATNNNNNNTTCGGNNN 120 ************* *** ** **** ******** ***** consensus_2938#0 TATTACCTNACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCGTTAC 166 consensus_2938#1 TATTACCTAACTCGGCACGCGGATCGCCTTTCGCGACAACGTTGAACGCCAGACCNNTAC 180 ******** ********************************************** *** consensus_2938#0 CCACTTTCGGCGCGGCATCTGCCAGCATACTAAAGCGNTTGCTTAACACACGCGCTTCGC 226 consensus_2938#1 CCACTTTCGGCGCGGCATCTGCCNGCANACTAAAGCGGCTGCTTNNNNNNNGCGCTTCGC 240 *********************** *** ********* ***** ********* consensus_2938#0 GGAATACCGNNGTCGCCTGGCTACCGCTGACCTGTTTCAGAGCACTGTTNNNTTCANNNG 286 consensus_2938#1 GGAATACCNNNNNCGCCTGGC--------------------------------------- 261 ******** ** ******** consensus_2938#0 TCGNNNNNNCGTTCAGGCTGGTAAACAGTTCNNNNNNGGTGTAACCCGCATCCAGTGCTT 346 consensus_2938#1 ------------------------------------------------------------ consensus_2938#0 TCGNNNTGTCATTCACCGNNNNATCTNNNGCCACATCGNNNTNNNC 392 consensus_2938#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||