These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [CCACCTTCCCCACCCTTGTGTAGGCCCACACCCTTGTATGAGTGTGGTTTGTTGTGCCACAGTGCCACTGCCGACTACAATACCCCCAGGTGTTAATTGAAACTCCATAGGCACCCCACTTCTGAAGGAGGCCTACCGAGAAAGGGTCCACAAGTAGGCACACTCCGGTGCCACGTATCTCTTGGACTGGAGATTTTCTCGATCTGAGGGAATGCCTGAAGAAACCCACGTGGCTTGTGGTTTCCCCACCTGGAGGCTGAAGCCCNCCCGCTCNCNGTGCCCATAGTGATGGTTAGTGGCTGATGTTAACCTTGAATAGTGCACTGGCTGGTAATGGTTGCCACAGTAGTAGGCTGTTTACCTTTCTAGGCCNGTAATTATATATGTTTATGAAGTACTGTTTGTNCTCCTTGAAAAAAAAAA] [+] EMBL BI805462 [CCACCTTCCCCACCCTTGTGTAGGCCCACACCCTTGTATGAGTGTGGTTTGTTGTGCCACAGTGCCACTGCCGACTACAATACCCCCAGGTGTTAATTGAAACTCCATAGGCACCCCACTTCTGAAGGAGGCCTACCGAGAAAGGGTCCACAAGTAGGCACACTCCGGTGCCACGTATCTCTTGGACTGGAGATTTTCTCGATCTGAGGGAATGCCTGAAGAAACCCACGTGGCTTGTGGTTTCCCCACCTGGAGGCTGAAGCCCNCCCGCTCNCNGTGCCCATAGTGATGGTTAGTGGCTGATGTTAACCTTGAATAGTGCACTGGCTGGTAATGGTTGCCACAGTAGTAGGCTGTTTACCTTTCTAGGCCNGTAATTATATATGTTTATGAAGTACTGTTTGTNCTCCTTGAAAAAAAAAA] consensusID : consensus_2943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TCCAATAGTATGTTAGTGCTGATGTTAACTTAATAGTCACTGCTGTAATGTTCCAAGTAGTAGGCTGTTTACCTTCTAGGCCAGTAATTATATATGTTTATGAAGTACTGTTTGTCTAGTTGAAGGTGTTGCGCCAAGTGAGATCCACATAGGCAAATTAGGATTAATGCTGTGGATGGCGTTGGCTCAAAGTTGGTCTAATTAGCTCCAAAATCTGATATATGTTATGACAGTTTATGGGTGTGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAAAAAAAAAAA] [+] EMBL AU069261 [TCCAATAGTATGTTAGTGCTGATGTTAACTTAATAGTCACTGCTGTAATGTTCCAAGTAGTAGGCTGTTTACCTTCTAGGCCAGTAATTATATATGTTTATGAAGTACTGTTTGTCTAGTTGAAGGTGTTGCGCCAAGTGAGATCCACATAGGCAAATTAGGATTAATGCTGTGGATGGCGTTGGCTCAAAGTTGGTCTAATTAGCTCCAAAATCTGATATATGTTATGACAGTTTATGGGTGTGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2943#0 CCACCTTCCCCACCCTTGTGTAGGCCCACACCCTTGTATGAGTGTGGTTTGTTGTGCCAC 60 consensus_2943#1 ----------------------------------------------TCCAATAGTATGTT 14 * ** consensus_2943#0 AGTGCCACTGCCGACTACAATACCCCCAGGTGTTAATTGAAACTCCATAGGCACCCCACT 120 consensus_2943#1 AGTGCTGATGTTAACT-TAATAGTCACTGCTGTAATGTTCCAAGTAGTAGGCTGTTTACC 73 ***** ** *** **** * * * *** * * * ***** ** consensus_2943#0 TCTGAAGGAGGCCTACCGAGAAAGGGTCCACAAGTAGGCACACTCCGGTGCCACGTATCT 180 consensus_2943#1 TTCTAGGCCAG--TAATTATATATGTTTATGAAGTACTGTTTGTCTAGTTGAAGGTGTTG 131 * * * * ** * * * * * ***** ** ** * ** * consensus_2943#0 CTTGGACTGGAGATTTTCTCGATCTGAGGGAATGCCTGAAGAAACCCACGTGGCTTGTGG 240 consensus_2943#1 CGCCAAGTGAGA------TCCACATAGGCAAAT--TAGGATTAATGC-TGTGGATGGCGT 182 * * ** ** * * * *** * * ** * **** * * * consensus_2943#0 TTTCCCCACCTGGAGGCTGAAGCCCNCCCGCTCNCNGTGCCCATAGTGATGGTTAGTGGC 300 consensus_2943#1 TGGCTCAAAGTTG-GTCTAATTAGCTCCAAAATCTGATATATGTTATGACAGTTTATGGG 241 * * * * * * * ** * * ** * * *** *** *** consensus_2943#0 TGATGTTAACCTTGAATAGTGCACTGGCTGGTAATGGTTGCCACAGTAGTAGGCTGTTTA 360 consensus_2943#1 TG-TGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAAAAAAAAAAA---------- 290 ** **** * * * *** * * * * * * consensus_2943#0 CCTTTCTAGGCCNGTAATTATATATGTTTATGAAGTACTGTTTGTNCTCCTTGAAAAAAA 420 consensus_2943#1 ------------------------------------------------------------ consensus_2943#0 AAA 423 consensus_2943#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||