These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1375 fasta sequence [CAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGAGCATGGAGGAGCTGAAGCAGAGCTTGATGGCGACAACGCTGGAGCTGGACGCGGCGAAGGAGGAGCTCAAGAAGAAGGAGCAGAGCATCGCCAAGCTCGCCGACCTCGTCCGCCATGTCGCCAAGGAGCGCGACGACGCGCGCGACCAGCTGCAGCGTCTCCTCGCCGCCGCGGCCGCCAAGCCGCCGCCGCTCGTCACCTCCAGCGTCACCGACTCCGACGGCGGCAGCCTCGTCTCCTCCCCCGCCGCCGACAACCCCTTCTTCGACCCCGTCACCTCCTCCGACAAGCGCTGCTGCGCCATCGCCAGCCCGCCCCCCGCCGCCAAGCAGCAGCACGCCGCCGCCGCGGGCGCCGACGCGGTGCTCGACATGCTCGCCATGAAGAAGCCGCTGCCGCAGAGGGGCAGGCTGCTCCAGTCCGTCATGGAGGCCGGGCCGCTCCTGCAGAACCTGCTCGTCGCCGGCCTTCTCCCGCGGTGGCGCAACCCGCCGCCGGTCGCGCTCGACACGCTCCCCGTCGGCGTCCGGGCCGGTGGCGCTGTCTACCCCGGCGCGTCACTCTCGCCCGGGATCACCTCCTCCGCGGCGGTGATCGGCTACGGCGGCGGCGCCAATGCCTGCGGGAAGAGGCCCATGGCGGCGGCGGCGGCGGCGGTGGCGGCCAGCTGCTCGCCGGCGGCGTTCAGCGCCAAGCGGCATCGGCTGCACTGACCGTCCGATCCGATGCTGTCGTGTGCACGGGATCGGACGGCTGTCGTGCGTCCAGCTTACGACCGGTTGGTTCGTTAGGTGGTGGTCGTGTGGCCCACCTGTCAGTGACAAGGGATTGCCATTGAGGGCCCACTTGTCAGTGACATGTGATTACCATTGAGGGCGAGCGAATATTTGCATGAACCAAAAACATTAGTAGATGCTAACTGCTTAGTGTTAAGAGTCGTCATGATAGAATTATTATAGAGTTGATCCTGCTTAATTATGATGTAAATAGGAAGTTAGTATCAAATTTTAATTAAACCTGTTCCTTGCT] [+] EMBL AK106226 [CAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGAGCATGGAGGAGCTGAAGCAGAGCTTGATGGCGACAACGCTGGAGCTGGACGCGGCGAAGGAGGAGCTCAAGAAGAAGGAGCAGAGCATCGCCAAGCTCGCCGACCTCGTCCGCCATGTCGCCAAGGAGCGCGACGACGCGCGCGACCAGCTGCAGCGTCTCCTCGCCGCCGCGGCCGCCAAGCCGCCGCCGCTCGTCACCTCCAGCGTCACCGACTCCGACGGCGGCAGCCTCGTCTCCTCCCCCGCCGCCGACAACCCCTTCTTCGACCCCGTCACCTCCTCCGACAAGCGCTGCTGCGCCATCGCCAGCCCGCCCCCCGCCGCCAAGCAGCAGCACGCCGCCGCCGCGGGCGCCGACGCGGTGCTCGACATGCTCGCCATGAAGAAGCCGCTGCCGCAGAGGGGCAGGCTGCTCCAGTCCGTCATGGAGGCCGGGCCGCTCCTGCAGAACCTGCTCGTCGCCGGCCTTCTCCCGCGGTGGCGCAACCCGCCGCCGGTCGCGCTCGACACGCTCCCCGTCGGCGTCCGGGCCGGTGGCGCTGTCTACCCCGGCGCGTCACTCTCGCCCGGGATCACCTCCTCCGCGGCGGTGATCGGCTACGGCGGCGGCGCCAATGCCTGCGGGAAGAGGCCCATGGCGGCGGCGGCGGCGGCGGTGGCGGCCAGCTGCTCGCCGGCGGCGTTCAGCGCCAAGCGGCATCGGCTGCACTGACCGTCCGATCCGATGCTGTCGTGTGCACGGGATCGGACGGCTGTCGTGCGTCCAGCTTACGACCGGTTGGTTCGTTAGGTGGTGGTCGTGTGGCCCACCTGTCAGTGACAAGGGATTGCCATTGAGGGCCCACTTGTCAGTGACATGTGATTACCATTGAGGGCGAGCGAATATTTGCATGAACCAAAAACATTAGTAGATGCTAACTGCTTAGTGTTAAGAGTCGTCATGATAGAATTATTATAGAGTTGATCCTGCTTAATTATGATGTAAATAGGAAGTTAGTATCAAATTTTAATTAAACCTGTTCCTTGCT] consensusID : consensus_2946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 978 fasta sequence [AACCTCCTCCTGTGATTAGTAAACAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGGTAATTAATTGATTTGGCAAACATCGTCTTTGATCTCCAGCCGTCTTGTTTCTCTCCGGTGAACCCAAACGGAAGAAAGATTTCTGAGCACCGCATTTCTTGGCCGGCCATGGCCGCCGCCGCCCGGCCGGCCGGCGGCGAAATGCGTGTATGAGTTTGCTGTTCTTGGAGTCGTAGCGGATGGGGGCGAATCATCGATGTGTTGTCTTGTCCCTCTCATCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTGTTTGTCGTGGTCAAGACGGGTTAGGCAAGCTTGGGGACTCGCGACGCCATGGCTGACGTGCTGGAATTCTTCTCCTTTTCCATCACTAGTTTTGCTTCTTCTTCTTTCTTCTTTCTTCTTTCTTGTGGAAAATTCACTCCAAGAAGAAGACTCACTTCTTGTAACTTGTCTTTGGTTCGGTTCACAGAAGTACTAGTAGAATACAATTTCAGGTTTGGTTTGGTTCACTTTTTTTCTTTTTCAACAAAAGTTTGGCACTGTAGTGAGATGCTGTACAATGATGTTGTTTTTTTTTCTTTTCCTCCGGTCCCTATGAGGAGAGAGAAACAGAGAGAGAGAGAGAGAGAGTGAT] [+] EMBL AK110672 [AACCTCCTCCTGTGATTAGTAAACAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTAGAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTCACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAAAAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAGGAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCGGAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGCCGCAAGAGGTAATTAATTGATTTGGCAAACATCGTCTTTGATCTCCAGCCGTCTTGTTTCTCTCCGGTGAACCCAAACGGAAGAAAGATTTCTGAGCACCGCATTTCTTGGCCGGCCATGGCCGCCGCCGCCCGGCCGGCCGGCGGCGAAATGCGTGTATGAGTTTGCTGTTCTTGGAGTCGTAGCGGATGGGGGCGAATCATCGATGTGTTGTCTTGTCCCTCTCATCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTGTTTGTCGTGGTCAAGACGGGTTAGGCAAGCTTGGGGACTCGCGACGCCATGGCTGACGTGCTGGAATTCTTCTCCTTTTCCATCACTAGTTTTGCTTCTTCTTCTTTCTTCTTTCTTCTTTCTTGTGGAAAATTCACTCCAAGAAGAAGACTCACTTCTTGTAACTTGTCTTTGGTTCGGTTCACAGAAGTACTAGTAGAATACAATTTCAGGTTTGGTTTGGTTCACTTTTTTTCTTTTTCAACAAAAGTTTGGCACTGTAGTGAGATGCTGTACAATGATGTTGTTTTTTTTTCTTTTCCTCCGGTCCCTATGAGGAGAGAGAAACAGAGAGAGAGAGAGAGAGAGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2946#0 -----------------------CAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTA 37 consensus_2946#1 AACCTCCTCCTGTGATTAGTAAACAAAACAAACCAAGAGAGACCATCATCTGCTAGCTTA 60 ************************************* consensus_2946#0 GAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTC 97 consensus_2946#1 GAACTCCTATATATACATTTTCTCTGAATCTCTCTGCACCCAAAAGCCTCCTTCTTCTTC 120 ************************************************************ consensus_2946#0 ACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAA 157 consensus_2946#1 ACTTGTCCTTGTTTCTCCCAAATCAAGAAGCACACACGTACGAGAGAGAGAGAGCAAGAA 180 ************************************************************ consensus_2946#0 AAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAG 217 consensus_2946#1 AAGGGGAGGAGGAAGAGATCATCAGATCGATCAGCGTGTGGCCAGGAGAAAGAGAAAGAG 240 ************************************************************ consensus_2946#0 GAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCG 277 consensus_2946#1 GAAGAGGAAGAGGAAGAGGAGAAGAGGAGATGGCAATGGAGCCGCTGCCACTCGGATTCG 300 ************************************************************ consensus_2946#0 GAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGC 337 consensus_2946#1 GAGACGGCCTGGACGCCACGCTGCTCTCCTCCCTCTGGGCCTTCCAGGATGATCTGCAGC 360 ************************************************************ consensus_2946#0 CGCAAGAGAGCATGGAGGAGCTGAAGCAGAGCTTGATGGCGACAACGCTGGAGCTGGACG 397 consensus_2946#1 CGCAAGAGGTAATTAATTGATTTG-GCAAACATCGTCTTTGATCTCCAGCCGTCTTGTTT 419 ******** ** * * *** * * * ** * ** * consensus_2946#0 CGGCGAAGGAGGAGCTCAAGAAGAAGGAGCAGAGCATCGCCAAGCTCGCCGACCTCGTCC 457 consensus_2946#1 CTCTCCGGT--GAACCCAAACGGAAGAAAGA-----TTTCTGAGC------ACCGCATTT 466 * * ** * *** **** * * * * *** *** * * consensus_2946#0 GCCATGTCGCCAAGGAGCGCGACGACGCGCGCGACCAGCTGCAGCGTCTCCTCGCCGCCG 517 consensus_2946#1 -CTTGGCCGGCCATGGCCGCCGCCGCCCGGCCGGCCGGCGGCGAAAT------------G 513 * * ** * * * *** * * ** ** ** ** ** * * consensus_2946#0 CGGCCGCCAAGCCGCCGCCGCTCGTCACCTCCAGCGTCACCGACTCCGACGGCGGCAGCC 577 consensus_2946#1 CGTGTATGAGTTTGCTGTTCTTGG--AGTCGTAGCGG-ATGGGGGCGAATCATCGATGTG 570 ** * ** * * * * **** * * * * * * consensus_2946#0 TCGTCTCCTCCCCCGCCGCCGACAACCCCTTCTTCGACCCCGTCACCTCCTCCGACAAGC 637 consensus_2946#1 TTGTCTTGTCCCTCTCATCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCG------ 624 * **** **** * * ** * * *** * * ** * ** ** consensus_2946#0 GCTGCTGCGCCATCGCCAGCCCGCCCCCCGCCGCCAAGCAGCAGCACGCCGCCGCCGCGG 697 consensus_2946#1 --TGTT-TGTCGTGGTCAAGACGGGTTAGGCAAGCTTGGGGACTCGCGACGCCATGGCTG 681 ** * * * * * ** ** ** * * * * ** **** ** * consensus_2946#0 GCGCCGACGCGGTGCTCGACATGCTCGCCATGAAGAAGCCGCTGCCGCAGAGGGGCAGGC 757 consensus_2946#1 ACGTGCTGGAATTCTTCTCCTTTTCCATCACTAGTT--TTGCTTCTTCT-----TCTTTC 734 ** * * ** * * * ** * *** * * * * consensus_2946#0 TGCTCCAGTCCGTCATGGAGGCCGGGCCGCTCCTGCAGAACCTGCTCGTCGCCGGCCTTC 817 consensus_2946#1 TTCTTTCTTCTTTCTTGTGGAAAATTCACTCCAAGAAGAAGACTCACTTCTTGTAACTTG 794 * ** ** ** ** * * * * **** * * ** *** consensus_2946#0 TCCCGCGGTGGCGCAACCCGCCGCCGGTCGCGCTCGACACGCTCCCCGTCGGCGTCCGGG 877 consensus_2946#1 TCTT----TGGTTCGGTTCACAGAAGTACTAGTAGAATACAATTTCAGGTTTGGTTTGGT 850 ** *** * * * * * * * * ** * * * ** ** consensus_2946#0 CCGGTGGCGCTGTCTACCCCGGCGCGTCACTCTCGC-CCGGGATCACCTCCTCCGCGGCG 936 consensus_2946#1 TCACT--TTTTTTCTTTTTCAACAAA--AGTTTGGCACTGTAGTGAGATGCTGTACAATG 906 * * * *** * * * * * ** * * * * * ** * * consensus_2946#0 GTGAT-CGGCTACGGCGGCGGCGCCAATGCCTGCGGGAAGAGGCCCATGGCGGCGGCGGC 995 consensus_2946#1 ATGTTGTTTTTTTTTCTTTTCCTCCGGTCCCTATGAGGAGAGAGAAACAGAGAGAGAGAG 966 ** * * * * ** * *** * * **** * * * * * consensus_2946#0 GGCGGCGGTGGCGGCCAGCTGCTCGCCGGCGGCGTTCAGCGCCAAGCGGCATCGGCTGCA 1055 consensus_2946#1 AGAGAGAGTGAT------------------------------------------------ 978 * * *** consensus_2946#0 CTGACCGTCCGATCCGATGCTGTCGTGTGCACGGGATCGGACGGCTGTCGTGCGTCCAGC 1115 consensus_2946#1 ------------------------------------------------------------ consensus_2946#0 TTACGACCGGTTGGTTCGTTAGGTGGTGGTCGTGTGGCCCACCTGTCAGTGACAAGGGAT 1175 consensus_2946#1 ------------------------------------------------------------ consensus_2946#0 TGCCATTGAGGGCCCACTTGTCAGTGACATGTGATTACCATTGAGGGCGAGCGAATATTT 1235 consensus_2946#1 ------------------------------------------------------------ consensus_2946#0 GCATGAACCAAAAACATTAGTAGATGCTAACTGCTTAGTGTTAAGAGTCGTCATGATAGA 1295 consensus_2946#1 ------------------------------------------------------------ consensus_2946#0 ATTATTATAGAGTTGATCCTGCTTAATTATGATGTAAATAGGAAGTTAGTATCAAATTTT 1355 consensus_2946#1 ------------------------------------------------------------ consensus_2946#0 AATTAAACCTGTTCCTTGCT 1375 consensus_2946#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||