Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2962 cluster # 2962       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2962#0 length = 2577 sequences # 2  

consensusID : consensus_2962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2577
fasta sequence
                              [CTCCTCCATCTCCCTCTCCTAGCCAAGAACTCCTCCTCCCCTCCCCCAGCATTGCCGTGGGATGTGGCGGCGGCGGCGGCGGAGTTGAGGCGATCAACAATGGCTGCGGCGATGGCGGAGTCGGATAATAACGGCAGCGAGGTCAGCCCCGGCGGCGGCGGGAGGGACTCGGCGTCGGCGGCGGCGGCGGTAGCTTCGCCGGTGAAGGCGAAGGCGAGGGCGTTGCTGGAGCTGGAGACGGCCAGCGCGGCGGCGGCGGCGTCGGAGTCGTCGGAGGCGAGGGTCGACGACGGCAACATCCAGGAGGCCGAGTCGTCGCTCCGCGAGGGCCTCTCCCTCAACTACGAGGAAGCGAGGGCTCTCCTAGGGAGACTGGAATACCAGAGAGGCAATGTAGAAGCTGCACTGCGAGTATTTGATGGGATAGATCTTCAAGCTGCTATCCAGCGCTTTCAACCATCGCTTTCAGAAAAGCCACCCTCAAAACGAAGTAACAAATTACGTTCAGATTCATCGAATTCAGGATCGCAGCATGCTGCCAGTCTTGTTCTTGAAGCCATTTACTTGAAGTCAATGTCTCTTCAGAAGTTAGGGAAAGCAGTGGAGGCTGCTCAACAGTGTAGAAGTGTCCTTGATGCTGTTGAAAGTATTTTCCAACGTGGCATACCCGATGTCATGGTTGAACAAAAGCTTCAGGAAACCGTTAGTAAATCTGTCGAGCTTCTCCCAGAACTTTGGAAGCAAGCTGGAGCCTATCAAGAGGCGCTCGCTTCTTACCGGCGTGCTCTTCTTAGTCAGTGGAATCTCGATGATGACTGCTGCACAAGGATTCAGAAGAGATTTGCTGTTTTTCTGTTGTATGGTGGCGTAGAGGCTAGCCCCCCAAGCTTGGCTTCACAAACTGAAGGATCATATGTTCCTAAGAATAACTTGGAAGAGGCAATCCTTTTGCTCATGATAATATTGAAAAAGTGGTACCTTGGGAAGACTCACTGGGATCCATCAGTGATGGAGCATCTAACATTTGCATTGTCACTTTGTGGTCAGACATCTGTTCTTGCCAAGCATCTTGAAGAGGTTTTACCTGGAATATACCCTCGAACTGGAAGATGGTATAGTCTAGCTCTTTGCAATTATGCAGCTTCACATAATGAAGCTGCATTAAATTTGTTAAGGAAGTTGTTGAATAAGAACGAGAGTCCTGGTGACATAATGGCCCTCCTGTTAGCTGCTAAGTTATGCAGCTCAGATTATTCTCTTGCTTCTGAAGGAGTAGAGTATGCAAGAAGAGCTGTTACAAATGTTGATTCATCAGATGGTCATTTAAAGAGCGCTGCGCTCCACTTCTTGGGGAGTTGCCTGGCTAAGAAGTCTAGAATCGCTACATCTGATCACCAAAGATCTCTCTTGCAGACTGAGTCTTTGAAGTCACTTAGTGAAGCGATTTCTCTTGATCGTCACAACCCAGATTTAATATATGACATGGGTATTGAATATGCTGAGCAACGAAACATGCAGGCTGCTTTGAAATGTGCAAAGGAGTTCATTGATGCAACTGGTGGGTCTGTTTCTAAAGGTTGGAGATTGCTATCTTTGGTTCTTTCTGCACAACAAAGGTATTCAGAAGCAGAGGTGGTGACTGATGCTGCATTAGATGAAACTACAAAGTGGGAACAAGGGCCATTACTTAGAATAAAGGCTAAACTGAAGGTTGCTCAATCGTTGCCAATGGAAGCAGTTGAAGCATACCGTGCCCTTCTTGCTCTTGTTCAGGCACAACGAAAGGCTTATGGTACCGTAAAAAATGGCACAGAGGAGGTTGATAATAAAGTGAGCGAGTTTGAAGTTTGGCAAGGTCTTGCCAACTTGTATGCTAGTCTTTCCTATTGGAGAGACGCCGAGATATGTTTACAGAAGGCTAAAGCCCTCAAATCATTCTCGGCCATAACGCTTCATGCAGAAGGTTACACGCGTGAGGTGCGTGAGCAGACACAGGACGCACTGGCTGCATACTTCAATGCGGTCTCGACCGAGGTGGAGCACGTACCATCAAAGGTATCCATCGGCGCCCTCCTGTCCAAACAAGGCCCCAAGTATCTCCCCGTCGCAAGGAGCTTCCTCTCGGACGCCCTAAGGCACGAGCCGACGAACCGGATGGCATGGTTCTACCTAGGGAAGGTCCACAAGCATGATGGCAGGCTAGCTGATGCTGCTGACTGCTTCCAGGCAGCCTCAATGCTTGAGGAATCAGACCCAATAGAAAGCTTCAGATCACTCTGATGGCTCATCATCTTACTGCAGCAACATTGAGGTTTTCTTTTTTCGCGGGTTAATTTTTCTTCTCTCCTCTTCTTCTCCTCCTAGCTTTTTTTGGTACATAGCTGGGTGGAATCTGGATACCAGCTACATGTAACTTTTGTATCCGTAGGTGCCAGCGTGCTCGTCACGCTGTTGTCGGATATTTTGACAAAATGATGTAATTTGGCTGCTAAATGGTAATAGCCGTATATATAAGTTGCACTAGAACTGTCGTACTGTACTGTTGATTTTTACAGATATTAGTATTGAATATAATCC]

[+] EMBL AK073968             [CTCCTCCATCTCCCTCTCCTAGCCAAGAACTCCTCCTCCCCTCCCCCAGCATTGCCGTGGGATGTGGCGGCGGCGGCGGCGGAGTTGAGGCGATCAACAATGGCTGCGGCGATGGCGGAGTCGGATAATAACGGCAGCGAGGTCAGCCCCGGCGGCGGCGGGAGGGACTCGGCGTCGGCGGCGGCGGCGGTAGCTTCGCCGGTGAAGGCGAAGGCGAGGGCGTTGCTGGAGCTGGAGACGGCCAGCGCGGCGGCGGCGGCGTCGGAGTCGTCGGAGGCGAGGGTCGACGACGGCAACATCCAGGAGGCCGAGTCGTCGCTCCGCGAGGGCCTCTCCCTCAACTACGAGGAAGCGAGGGCTCTCCTAGGGAGACTGGAATACCAGAGAGGCAATGTAGAAGCTGCACTGCGAGTATTTGATGGGATAGATCTTCAAGCTGCTATCCAGCGCTTTCAACCATCGCTTTCAGAAAAGCCACCCTCAAAACGAAGTAACAAATTACGTTCAGATTCATCGAATTCAGGATCGCAGCATGCTGCCAGTCTTGTTCTTGAAGCCATTTACTTGAAGTCAATGTCTCTTCAGAAGTTAGGGAAAGCAGTGGAGGCTGCTCAACAGTGTAGAAGTGTCCTTGATGCTGTTGAAAGTATTTTCCAACGTGGCATACCCGATGTCATGGTTGAACAAAAGCTTCAGGAAACCGTTAGTAAATCTGTCGAGCTTCTCCCAGAACTTTGGAAGCAAGCTGGAGCCTATCAAGAGGCGCTCGCTTCTTACCGGCGTGCTCTTCTTAGTCAGTGGAATCTCGATGATGACTGCTGCACAAGGATTCAGAAGAGATTTGCTGTTTTTCTGTTGTATGGTGGCGTAGAGGCTAGCCCCCCAAGCTTGGCTTCACAAACTGAAGGATCATATGTTCCTAAGAATAACTTGGAAGAGGCAATCCTTTTGCTCATGATAATATTGAAAAAGTGGTACCTTGGGAAGACTCACTGGGATCCATCAGTGATGGAGCATCTAACATTTGCATTGTCACTTTGTGGTCAGACATCTGTTCTTGCCAAGCATCTTGAAGAGGTTTTACCTGGAATATACCCTCGAACTGGAAGATGGTATAGTCTAGCTCTTTGCAATTATGCAGCTTCACATAATGAAGCTGCATTAAATTTGTTAAGGAAGTTGTTGAATAAGAACGAGAGTCCTGGTGACATAATGGCCCTCCTGTTAGCTGCTAAGTTATGCAGCTCAGATTATTCTCTTGCTTCTGAAGGAGTAGAGTATGCAAGAAGAGCTGTTACAAATGTTGATTCATCAGATGGTCATTTAAAGAGCGCTGCGCTCCACTTCTTGGGGAGTTGCCTGGCTAAGAAGTCTAGAATCGCTACATCTGATCACCAAAGATCTCTCTTGCAGACTGAGTCTTTGAAGTCACTTAGTGAAGCGATTTCTCTTGATCGTCACAACCCAGATTTAATATATGACATGGGTATTGAATATGCTGAGCAACGAAACATGCAGGCTGCTTTGAAATGTGCAAAGGAGTTCATTGATGCAACTGGTGGGTCTGTTTCTAAAGGTTGGAGATTGCTATCTTTGGTTCTTTCTGCACAACAAAGGTATTCAGAAGCAGAGGTGGTGACTGATGCTGCATTAGATGAAACTACAAAGTGGGAACAAGGGCCATTACTTAGAATAAAGGCTAAACTGAAGGTTGCTCAATCGTTGCCAATGGAAGCAGTTGAAGCATACCGTGCCCTTCTTGCTCTTGTTCAGGCACAACGAAAGGCTTATGGTACCGTAAAAAATGGCACAGAGGAGGTTGATAATAAAGTGAGCGAGTTTGAAGTTTGGCAAGGTCTTGCCAACTTGTATGCTAGTCTTTCCTATTGGAGAGACGCCGAGATATGTTTACAGAAGGCTAAAGCCCTCAAATCATTCTCGGCCATAACGCTTCATGCAGAAGGTTACACGCGTGAGGTGCGTGAGCAGACACAGGACGCACTGGCTGCATACTTCAATGCGGTCTCGACCGAGGTGGAGCACGTACCATCAAAGGTATCCATCGGCGCCCTCCTGTCCAAACAAGGCCCCAAGTATCTCCCCGTCGCAAGGAGCTTCCTCTCGGACGCCCTAAGGCACGAGCCGACGAACCGGATGGCATGGTTCTACCTAGGGAAGGTCCACAAGCATGATGGCAGGCTAGCTGATGCTGCTGACTGCTTCCAGGCAGCCTCAATGCTTGAGGAATCAGACCCAATAGAAAGCTTCAGATCACTCTGATGGCTCATCATCTTACTGCAGCAACATTGAGGTTTTCTTTTTTCGCGGGTTAATTTTTCTTCTCTCCTCTTCTTCTCCTCCTAGCTTTTTTTGGTACATAGCTGGGTGGAATCTGGATACCAGCTACATGTAACTTTTGTATCCGTAGGTGCCAGCGTGCTCGTCACGCTGTTGTCGGATATTTTGACAAAATGATGTAATTTGGCTGCTAAATGGTAATAGCCGTATATATAAGTTGCACTAGAACTGTCGTACTGTACTGTTGATTTTTACAGATATTAGTATTGAATATAATCC]
[+] EMBL CA764681             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGTGAGCGAGTTTGAAGTTTGGCAAGGTCTTGCCAACTTGTATGCTAGTCTTCCCTATTGGAGAGACGCCGAGATATGTTTACAGAAGGCTAAAACCCTCAAATCATTCTCGGCCATAACGCTTCATGCAGAAGGTTAAACGCGTGAGGTGCGTGAGCAGACACAGGACGCACTGGCTGCATACTTCAATGCGGTCTCGACCGAGGTGGAGCACGTACCATCAAAGGTATCCATCGGCGCCCTCCTGTCCAAACAAGGCCCCAAGTATCTCCCCGTCGCAAGGAGCTTCCTCTCGGACGCCCTAAGGCACGAGCCGACGAACCGGATGGCATGGTTCTACCTAGGGAAGGTCCACAAGCATGATGGCAGGCTAGCTGATGCTGCTGACTGCTTCCAGGCAGCCTCAATGCTTGAGGAATCAGACCCAATAGAAAGCTTCAGATCACTCTGATGGCTCATCATCTTACTGCAACAACATTGAGGTTTTCTTTTTTCGCGGGTTAATTTTTCTTCTCTCCTCTTCTTCTCCTCCTACCTTTTTTTGGTACATAGCTGGGTGGAATCTGGATACCAGCTACATGTAACTTTTGTATCCGTAGGTGCCAGCGTGCTCGTCACGCTGNTGTCGGATATTTTGACAAAATGATGTAATTTGGCTGCTNAATGGTAATAGCCGTATATATAAGn                                                             ]


>consensus_2962#0 CTCCTCCATCTCCCTCTCCTAGCCAAGAACTCCTCCTCCCCTCCCCCAGCATTGCCGTGG GATGTGGCGGCGGCGGCGGCGGAGTTGAGGCGATCAACAATGGCTGCGGCGATGGCGGAG TCGGATAATAACGGCAGCGAGGTCAGCCCCGGCGGCGGCGGGAGGGACTCGGCGTCGGCG GCGGCGGCGGTAGCTTCGCCGGTGAAGGCGAAGGCGAGGGCGTTGCTGGAGCTGGAGACG GCCAGCGCGGCGGCGGCGGCGTCGGAGTCGTCGGAGGCGAGGGTCGACGACGGCAACATC CAGGAGGCCGAGTCGTCGCTCCGCGAGGGCCTCTCCCTCAACTACGAGGAAGCGAGGGCT CTCCTAGGGAGACTGGAATACCAGAGAGGCAATGTAGAAGCTGCACTGCGAGTATTTGAT GGGATAGATCTTCAAGCTGCTATCCAGCGCTTTCAACCATCGCTTTCAGAAAAGCCACCC TCAAAACGAAGTAACAAATTACGTTCAGATTCATCGAATTCAGGATCGCAGCATGCTGCC AGTCTTGTTCTTGAAGCCATTTACTTGAAGTCAATGTCTCTTCAGAAGTTAGGGAAAGCA GTGGAGGCTGCTCAACAGTGTAGAAGTGTCCTTGATGCTGTTGAAAGTATTTTCCAACGT GGCATACCCGATGTCATGGTTGAACAAAAGCTTCAGGAAACCGTTAGTAAATCTGTCGAG CTTCTCCCAGAACTTTGGAAGCAAGCTGGAGCCTATCAAGAGGCGCTCGCTTCTTACCGG CGTGCTCTTCTTAGTCAGTGGAATCTCGATGATGACTGCTGCACAAGGATTCAGAAGAGA TTTGCTGTTTTTCTGTTGTATGGTGGCGTAGAGGCTAGCCCCCCAAGCTTGGCTTCACAA ACTGAAGGATCATATGTTCCTAAGAATAACTTGGAAGAGGCAATCCTTTTGCTCATGATA ATATTGAAAAAGTGGTACCTTGGGAAGACTCACTGGGATCCATCAGTGATGGAGCATCTA ACATTTGCATTGTCACTTTGTGGTCAGACATCTGTTCTTGCCAAGCATCTTGAAGAGGTT TTACCTGGAATATACCCTCGAACTGGAAGATGGTATAGTCTAGCTCTTTGCAATTATGCA GCTTCACATAATGAAGCTGCATTAAATTTGTTAAGGAAGTTGTTGAATAAGAACGAGAGT CCTGGTGACATAATGGCCCTCCTGTTAGCTGCTAAGTTATGCAGCTCAGATTATTCTCTT GCTTCTGAAGGAGTAGAGTATGCAAGAAGAGCTGTTACAAATGTTGATTCATCAGATGGT CATTTAAAGAGCGCTGCGCTCCACTTCTTGGGGAGTTGCCTGGCTAAGAAGTCTAGAATC GCTACATCTGATCACCAAAGATCTCTCTTGCAGACTGAGTCTTTGAAGTCACTTAGTGAA GCGATTTCTCTTGATCGTCACAACCCAGATTTAATATATGACATGGGTATTGAATATGCT GAGCAACGAAACATGCAGGCTGCTTTGAAATGTGCAAAGGAGTTCATTGATGCAACTGGT GGGTCTGTTTCTAAAGGTTGGAGATTGCTATCTTTGGTTCTTTCTGCACAACAAAGGTAT TCAGAAGCAGAGGTGGTGACTGATGCTGCATTAGATGAAACTACAAAGTGGGAACAAGGG CCATTACTTAGAATAAAGGCTAAACTGAAGGTTGCTCAATCGTTGCCAATGGAAGCAGTT GAAGCATACCGTGCCCTTCTTGCTCTTGTTCAGGCACAACGAAAGGCTTATGGTACCGTA AAAAATGGCACAGAGGAGGTTGATAATAAAGTGAGCGAGTTTGAAGTTTGGCAAGGTCTT GCCAACTTGTATGCTAGTCTTTCCTATTGGAGAGACGCCGAGATATGTTTACAGAAGGCT AAAGCCCTCAAATCATTCTCGGCCATAACGCTTCATGCAGAAGGTTACACGCGTGAGGTG CGTGAGCAGACACAGGACGCACTGGCTGCATACTTCAATGCGGTCTCGACCGAGGTGGAG CACGTACCATCAAAGGTATCCATCGGCGCCCTCCTGTCCAAACAAGGCCCCAAGTATCTC CCCGTCGCAAGGAGCTTCCTCTCGGACGCCCTAAGGCACGAGCCGACGAACCGGATGGCA TGGTTCTACCTAGGGAAGGTCCACAAGCATGATGGCAGGCTAGCTGATGCTGCTGACTGC TTCCAGGCAGCCTCAATGCTTGAGGAATCAGACCCAATAGAAAGCTTCAGATCACTCTGA TGGCTCATCATCTTACTGCAGCAACATTGAGGTTTTCTTTTTTCGCGGGTTAATTTTTCT TCTCTCCTCTTCTTCTCCTCCTAGCTTTTTTTGGTACATAGCTGGGTGGAATCTGGATAC CAGCTACATGTAACTTTTGTATCCGTAGGTGCCAGCGTGCTCGTCACGCTGTTGTCGGAT ATTTTGACAAAATGATGTAATTTGGCTGCTAAATGGTAATAGCCGTATATATAAGTTGCA CTAGAACTGTCGTACTGTACTGTTGATTTTTACAGATATTAGTATTGAATATAATCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)