|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1627 fasta sequence
[TCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTGCAATATAAGAACTGAAGATATTTCTTCAGTCCCCAGGGATGGCACAAATGGCTGATGATCAAGCTCATGCAGGATTCCATCCTTGATGACATCTGATAATGTGGTGTCGAATTGAGGCAAAAAATTATCCTCGATTTCCTAGAAGATTGGCGTGTATTGCAATCCTTGTACCATCAGAGATGCTAACCCACCACCTCACCCCTAGTTGTGCAAGGAGGCCCAACAGCCAATTTGACCACAGTACCTGCCACCCTGGGGGAATTAATCTAGAGGGCCATCGGTGGCGAAGAAGAGCAACTCATCGGAGAGAATGAATACGTACGCTAATATGACAATCATCAAATCTTTCAAGATCCAGGTGACAGAATCTTAAGCATTCTAACATAGTGCCACGTAAAGGAGAAGATCTAGTTGCCCCCTCCCCCATGTGTTGGTGTAGCGTGTTTAGCAGTGGCGGTAAGTACTCCAGTACAC]
[+] EMBL AK107571 [TCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTGCAATATAAGAACTGAAGATATTTCTTCAGTCCCCAGGGATGGCACAAATGGCTGATGATCAAGCTCATGCAGGATTCCATCCTTGATGACATCTGATAATGTGGTGTCGAATTGAGGCAAAAAATTATCCTCGATTTCCTAGAAGATTGGCGTGTATTGCAATCCTTGTACCATCAGAGATGCTAACCCACCACCTCACCCCTAGTTGTGCAAGGAGGCCCAACAGCCAATTTGACCACAGTACCTGCCACCCTGGGGGAATTAATCTAGAGGGCCATCGGTGGCGAAGAAGAGCAACTCATCGGAGAGAATGAATACGTACGCTAATATGACAATCATCAAATCTTTCAAGATCCAGGTGACAGAATCTTAAGCATTCTAACATAGTGCCACGTAAAGGAGAAGATCTAGTTGCCCCCTCCCCCATGTGTTGGTGTAGCGTGTTTAGCAGTGGCGGTAAGTACTCCAGTACAC]
consensusID : consensus_2970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1422 fasta sequence
[TATTCGAAATCCATCCCCCCCCCAACAAAACCCGTCTCCCATCCAATCCCCCGATCTCTCTCTCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTAAGGAAAACCAATTTAATCTCAGCGCACTCTGCATCAACTTCAGAAGTTATGTTGCATACCATGTATATTTATTTAGAGAGTAGCTTAAATTGTAAGTAATCTAGGAAAGAGTGTAATAGCATAATCTTTAATTTTTGCTACTGAATTGCATTCCGACTGTAATAGACAGTTACCAATCCATCTTTACGTAATTATTATGGTTAACAT]
[+] EMBL AK106510 [TATTCGAAATCCATCCCCCCCCCAACAAAACCCGTCTCCCATCCAATCCCCCGATCTCTCTCTCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTAAGGAAAACCAATTTAATCTCAGCGCACTCTGCATCAACTTCAGAAGTTATGTTGCATACCATGTATATTTATTTAGAGAGTAGCTTAAATTGTAAGTAATCTAGGAAAGAGTGTAATAGCATAATCTTTAATTTTTGCTACTGAATTGCATTCCGACTGTAATAGACAGTTACCAATCCATCTTTACGTAATTATTATGGTTAACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2970#0 ------------------------------------------------------------
consensus_2970#1 TATTCGAAATCCATCCCCCCCCCAACAAAACCCGTCTCCCATCCAATCCCCCGATCTCTC 60
consensus_2970#0 --TCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGAT 58
consensus_2970#1 TCTCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGAT 120
**********************************************************
consensus_2970#0 GCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGA 118
consensus_2970#1 GCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGA 180
************************************************************
consensus_2970#0 CGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGC 178
consensus_2970#1 CGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGC 240
************************************************************
consensus_2970#0 CCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGC 238
consensus_2970#1 CCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGC 300
************************************************************
consensus_2970#0 GCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATT 298
consensus_2970#1 GCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATT 360
************************************************************
consensus_2970#0 GGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTC 358
consensus_2970#1 GGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTC 420
************************************************************
consensus_2970#0 GGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATG 418
consensus_2970#1 GGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATG 480
************************************************************
consensus_2970#0 CTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACG 478
consensus_2970#1 CTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACG 540
************************************************************
consensus_2970#0 GAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGC 538
consensus_2970#1 GAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGC 600
************************************************************
consensus_2970#0 CCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAA 598
consensus_2970#1 CCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAA 660
************************************************************
consensus_2970#0 GAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGA 658
consensus_2970#1 GAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGA 720
************************************************************
consensus_2970#0 TAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACA 718
consensus_2970#1 TAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACA 780
************************************************************
consensus_2970#0 CCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGT 778
consensus_2970#1 CCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGT 840
************************************************************
consensus_2970#0 TGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGA 838
consensus_2970#1 TGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGA 900
************************************************************
consensus_2970#0 AGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGC 898
consensus_2970#1 AGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGC 960
************************************************************
consensus_2970#0 TCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGG 958
consensus_2970#1 TCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGG 1020
************************************************************
consensus_2970#0 TCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTAC 1018
consensus_2970#1 TCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTAC 1080
************************************************************
consensus_2970#0 TGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGA 1078
consensus_2970#1 TGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGA 1140
************************************************************
consensus_2970#0 AATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTA 1138
consensus_2970#1 AATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTA 1200
************************************************************
consensus_2970#0 CCACATCTACAGTTGCAATATAAGAACTGAAGATATTTCTTCAGTCCCCAGGGATGGCAC 1198
consensus_2970#1 CCACATCTACAGTTAAGGAAAACCAATTTAA--TCTCAGCGCACTCTGCATCAACTTCAG 1258
************** * * ** * ** * * ** ** ** * **
consensus_2970#0 AAATGGCTGATGATCAAGCTCATGCAGGATTCCATCCTTGATGACATCTGATAATGTGGT 1258
consensus_2970#1 AAGTT----ATGTTGCATACCATGTATATTT---ATTTAGAGAGTAGCTTAAATTGTAA- 1310
** * *** * * **** * ** * ** * ** * * ***
consensus_2970#0 GTCGAATTGAGGCAAAAAATTATCCTCGATTTCCTAGAAGATTGGCG-TGTATTGCAATC 1317
consensus_2970#1 GT--AATCTAGGAAAGAGTGTAATAGCATAATCTTTAATTTTTGCTACTGAATTGCATTC 1368
** *** *** ** * ** * ** * * *** ** ****** **
consensus_2970#0 CTTGTACCATCAGAGATGCTAACCCACCACCTCACCCCTAGTTGTGCAAGGAGGCCCAAC 1377
consensus_2970#1 C---GACTGTAATAGACAGTTACCAATCCATCTTTACGTAATTATTATGGTTAACAT--- 1422
* ** * * *** * *** * * * ** ** * * *
consensus_2970#0 AGCCAATTTGACCACAGTACCTGCCACCCTGGGGGAATTAATCTAGAGGGCCATCGGTGG 1437
consensus_2970#1 ------------------------------------------------------------
consensus_2970#0 CGAAGAAGAGCAACTCATCGGAGAGAATGAATACGTACGCTAATATGACAATCATCAAAT 1497
consensus_2970#1 ------------------------------------------------------------
consensus_2970#0 CTTTCAAGATCCAGGTGACAGAATCTTAAGCATTCTAACATAGTGCCACGTAAAGGAGAA 1557
consensus_2970#1 ------------------------------------------------------------
consensus_2970#0 GATCTAGTTGCCCCCTCCCCCATGTGTTGGTGTAGCGTGTTTAGCAGTGGCGGTAAGTAC 1617
consensus_2970#1 ------------------------------------------------------------
consensus_2970#0 TCCAGTACAC 1627
consensus_2970#1 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||