These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1627 fasta sequence [TCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTGCAATATAAGAACTGAAGATATTTCTTCAGTCCCCAGGGATGGCACAAATGGCTGATGATCAAGCTCATGCAGGATTCCATCCTTGATGACATCTGATAATGTGGTGTCGAATTGAGGCAAAAAATTATCCTCGATTTCCTAGAAGATTGGCGTGTATTGCAATCCTTGTACCATCAGAGATGCTAACCCACCACCTCACCCCTAGTTGTGCAAGGAGGCCCAACAGCCAATTTGACCACAGTACCTGCCACCCTGGGGGAATTAATCTAGAGGGCCATCGGTGGCGAAGAAGAGCAACTCATCGGAGAGAATGAATACGTACGCTAATATGACAATCATCAAATCTTTCAAGATCCAGGTGACAGAATCTTAAGCATTCTAACATAGTGCCACGTAAAGGAGAAGATCTAGTTGCCCCCTCCCCCATGTGTTGGTGTAGCGTGTTTAGCAGTGGCGGTAAGTACTCCAGTACAC] [+] EMBL AK107571 [TCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTGCAATATAAGAACTGAAGATATTTCTTCAGTCCCCAGGGATGGCACAAATGGCTGATGATCAAGCTCATGCAGGATTCCATCCTTGATGACATCTGATAATGTGGTGTCGAATTGAGGCAAAAAATTATCCTCGATTTCCTAGAAGATTGGCGTGTATTGCAATCCTTGTACCATCAGAGATGCTAACCCACCACCTCACCCCTAGTTGTGCAAGGAGGCCCAACAGCCAATTTGACCACAGTACCTGCCACCCTGGGGGAATTAATCTAGAGGGCCATCGGTGGCGAAGAAGAGCAACTCATCGGAGAGAATGAATACGTACGCTAATATGACAATCATCAAATCTTTCAAGATCCAGGTGACAGAATCTTAAGCATTCTAACATAGTGCCACGTAAAGGAGAAGATCTAGTTGCCCCCTCCCCCATGTGTTGGTGTAGCGTGTTTAGCAGTGGCGGTAAGTACTCCAGTACAC] consensusID : consensus_2970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1422 fasta sequence [TATTCGAAATCCATCCCCCCCCCAACAAAACCCGTCTCCCATCCAATCCCCCGATCTCTCTCTCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTAAGGAAAACCAATTTAATCTCAGCGCACTCTGCATCAACTTCAGAAGTTATGTTGCATACCATGTATATTTATTTAGAGAGTAGCTTAAATTGTAAGTAATCTAGGAAAGAGTGTAATAGCATAATCTTTAATTTTTGCTACTGAATTGCATTCCGACTGTAATAGACAGTTACCAATCCATCTTTACGTAATTATTATGGTTAACAT] [+] EMBL AK106510 [TATTCGAAATCCATCCCCCCCCCAACAAAACCCGTCTCCCATCCAATCCCCCGATCTCTCTCTCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGATGCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGACGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGCCCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGCGCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATTGGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTCGGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATGCTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACGGAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGCCCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAAGAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGATAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACACCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGTTGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGAAGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGCTCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGGTCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTACTGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGAAATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTACCACATCTACAGTTAAGGAAAACCAATTTAATCTCAGCGCACTCTGCATCAACTTCAGAAGTTATGTTGCATACCATGTATATTTATTTAGAGAGTAGCTTAAATTGTAAGTAATCTAGGAAAGAGTGTAATAGCATAATCTTTAATTTTTGCTACTGAATTGCATTCCGACTGTAATAGACAGTTACCAATCCATCTTTACGTAATTATTATGGTTAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2970#0 ------------------------------------------------------------ consensus_2970#1 TATTCGAAATCCATCCCCCCCCCAACAAAACCCGTCTCCCATCCAATCCCCCGATCTCTC 60 consensus_2970#0 --TCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGAT 58 consensus_2970#1 TCTCCCCCCACACAACCCATCGGCGGTGATCGCCATGGCGAACAAGCTGGTCTCGGAGAT 120 ********************************************************** consensus_2970#0 GCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGA 118 consensus_2970#1 GCGGCTACCTCCCCACCTCGCCCACATCCTCGCCGCGCGCCGCCTCACCACCGCCAAGGA 180 ************************************************************ consensus_2970#0 CGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGC 178 consensus_2970#1 CGTGCTGTCGCTGCCGGAGGTGGAGCTCATGGGCGTCCTCGACGCCGGCATCCACACCGC 240 ************************************************************ consensus_2970#0 CCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGC 238 consensus_2970#1 CCGCGCCGCCGTCGCCCACGTCAGCGAGATCGCCTGCCCTCCGTACCAAACGGCGCTTGC 300 ************************************************************ consensus_2970#0 GCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATT 298 consensus_2970#1 GCTCCTCGAGGCCTTCAGGGCAAGAGGAGATGGGCGGCTGGCCACCACGCTCCGCGGATT 360 ************************************************************ consensus_2970#0 GGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTC 358 consensus_2970#1 GGATGAGGCATTGCATGGAGGAATCCCCGCAGGGAAGCTCACTGAGGTCGTTGGGCCCTC 420 ************************************************************ consensus_2970#0 GGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATG 418 consensus_2970#1 GGGGATTGGCAAGACCCAGTTCTGTCTGAAGCTTGCTTTGCTAGCAACATTACCAGAATG 480 ************************************************************ consensus_2970#0 CTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACG 478 consensus_2970#1 CTATGGAGGCTTAAATGGTCGAGTTTTGTATATTGATACTGAATCCAAATTCTCTTCACG 540 ************************************************************ consensus_2970#0 GAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGC 538 consensus_2970#1 GAGGATGATCGAGATTGGTGAGAAAAGCTTTCCTCAAATATTTCGTCAAGAAGGCTTGGC 600 ************************************************************ consensus_2970#0 CCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAA 598 consensus_2970#1 CCAAAAGATGGCTGGGAGGATCCTAGTCCTGCGCCCAACATCATTATCTGAATTTACCAA 660 ************************************************************ consensus_2970#0 GAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGA 658 consensus_2970#1 GAGTTTGGAACAGATGAAGGTGACTCTTCTTCAGCATGATGTGAAGCTACTTGTTGTTGA 720 ************************************************************ consensus_2970#0 TAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACA 718 consensus_2970#1 TAGCATGGCTGCTCTTATGTCATCTGAGATTGAGAAAAGCGCAACAGGTCTCAGACAACA 780 ************************************************************ consensus_2970#0 CCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGT 778 consensus_2970#1 CCCTCTAAGATGGGCCCTTTCATTTCTTAAATCTATAGCAGAGTTCTCACAGATTCCTGT 840 ************************************************************ consensus_2970#0 TGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGA 838 consensus_2970#1 TGTTGTTACAAACCAAGTACGCAGCCAAAGTAATGATGATGGCTATCGTTATTCATTTGA 900 ************************************************************ consensus_2970#0 AGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGC 898 consensus_2970#1 AGTTGAGAAGAAATACGATAGTAATAATGCTGAAGGCTTTGAATCTCATCTTGTTGCTGC 960 ************************************************************ consensus_2970#0 TCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGG 958 consensus_2970#1 TCTAGGAATCCAGTGGGCTCATGCTGTAACTATACGTCTAGTCTTTGAGGCTCACTCAGG 1020 ************************************************************ consensus_2970#0 TCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTAC 1018 consensus_2970#1 TCACAGGTACATCAAGGTAGCTAAATCCCCTATGACTCCAGCGGTAGCTTTTCCCTTTAC 1080 ************************************************************ consensus_2970#0 TGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGA 1078 consensus_2970#1 TGTGGAGTCATCAGGAATAATATTACTTAGTGATGAGGGCATTGATGTGCCATCTCCTGA 1140 ************************************************************ consensus_2970#0 AATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTA 1138 consensus_2970#1 AATAACCTCAATCCGTTGTCAAGGAGAAAATGTCCTGGCTCAATGACCATTTGAATGCTA 1200 ************************************************************ consensus_2970#0 CCACATCTACAGTTGCAATATAAGAACTGAAGATATTTCTTCAGTCCCCAGGGATGGCAC 1198 consensus_2970#1 CCACATCTACAGTTAAGGAAAACCAATTTAA--TCTCAGCGCACTCTGCATCAACTTCAG 1258 ************** * * ** * ** * * ** ** ** * ** consensus_2970#0 AAATGGCTGATGATCAAGCTCATGCAGGATTCCATCCTTGATGACATCTGATAATGTGGT 1258 consensus_2970#1 AAGTT----ATGTTGCATACCATGTATATTT---ATTTAGAGAGTAGCTTAAATTGTAA- 1310 ** * *** * * **** * ** * ** * ** * * *** consensus_2970#0 GTCGAATTGAGGCAAAAAATTATCCTCGATTTCCTAGAAGATTGGCG-TGTATTGCAATC 1317 consensus_2970#1 GT--AATCTAGGAAAGAGTGTAATAGCATAATCTTTAATTTTTGCTACTGAATTGCATTC 1368 ** *** *** ** * ** * ** * * *** ** ****** ** consensus_2970#0 CTTGTACCATCAGAGATGCTAACCCACCACCTCACCCCTAGTTGTGCAAGGAGGCCCAAC 1377 consensus_2970#1 C---GACTGTAATAGACAGTTACCAATCCATCTTTACGTAATTATTATGGTTAACAT--- 1422 * ** * * *** * *** * * * ** ** * * * consensus_2970#0 AGCCAATTTGACCACAGTACCTGCCACCCTGGGGGAATTAATCTAGAGGGCCATCGGTGG 1437 consensus_2970#1 ------------------------------------------------------------ consensus_2970#0 CGAAGAAGAGCAACTCATCGGAGAGAATGAATACGTACGCTAATATGACAATCATCAAAT 1497 consensus_2970#1 ------------------------------------------------------------ consensus_2970#0 CTTTCAAGATCCAGGTGACAGAATCTTAAGCATTCTAACATAGTGCCACGTAAAGGAGAA 1557 consensus_2970#1 ------------------------------------------------------------ consensus_2970#0 GATCTAGTTGCCCCCTCCCCCATGTGTTGGTGTAGCGTGTTTAGCAGTGGCGGTAAGTAC 1617 consensus_2970#1 ------------------------------------------------------------ consensus_2970#0 TCCAGTACAC 1627 consensus_2970#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||