cluster # 2975

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Oryza sativa
cluster # 2975 cluster # 2975 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2975#0 length = 602 sequences # 1

consensus_2975#1 length = 244 sequences # 1

consensusID : consensus_2975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGACATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGAAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGACCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTTTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTAATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGTTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACTACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCTTA]

[+] EMBL CF306292             [CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGACATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGAAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGACCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTTTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTAATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGTTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACTACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCTTA]




>consensus_2975#0
CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGA
CATGACCCGGCGTATGCCCAGGGCAATGTAACACCTGTAAAGTCACATTCCCTATGCTGA
TGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAA
ACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCGA
AAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGAC
CATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATTT
TTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATTA
ATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTGT
TTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTACT
ACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGCT
TA

consensusID : consensus_2975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGTCAGN]

[+] EMBL CF196229             [NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGTCAGN]




>consensus_2975#1
NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTGATGGTATC
GCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCAAACATACG
ACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCGAAAACCGG
CACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGACNNTGCGT
CAGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2975#0      CGCCTTTGAAAATAACATCGCCAGAAATCAGCAGCTTTGCCCGATCATCAAAAAACACGA 60
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      CATGACCCGGCGTATGCCCAGGG-CAATGTAACACCTGTAAAGTCACATTCCCTATGCTG 119
consensus_2975#1      --------NNNGTATGCCNNNNNGCAATGTAACACNNNNAAAGTCANATTCCCTNNGCTG 52
                                 *******      ***********    ******* *******  ****

consensus_2975#0      ATGGTATCGCCTTCGTTCAGCCAACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCA 179
consensus_2975#1      ATGGTATCGCCTNCGTTCAGCCNACGATCTGGCGTCAGCGGCTGGCACTCTTCCAGACCA 112
                      ************ ********* *************************************

consensus_2975#0      AACATACGACTTTGCGCAGGCAAGCCTTGCAGCCAGAACTCATCTTCTTTTTCCGGGCCG 239
consensus_2975#1      AACATACGACTTTGCGCNNNCNAGCCTTGCAGCCNNNACTCATCTTCTTTTTNNNNNCCG 172
                      *****************   * ************   ***************     ***

consensus_2975#0      AAAACCGGCACGCCGTAATGTTGCGCCAGTTCCGCCGCTGCGCCAACGTGGTCCAGATGA 299
consensus_2975#1      AAAACCGGCACGCCNNNATGTTGCGCCAGTTCCGCCGCTGCGCCANCGTGGTCCNNATGA 232
                      **************   **************************** ********  ****

consensus_2975#0      CCATGCGTCAGCAGGATCTGCATCAGTGTCAGGCCGCTGTCATCAACTTCCTGTTTGATT 359
consensus_2975#1      CNNTGCGTCAGN------------------------------------------------ 244
                      *  ********                                                 

consensus_2975#0      TTTTCCGCATCGCCGCCAGGATCGACCAGTGCGGCCAGACGGGTTTGTTCACACCAGATT 419
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      AATGAACAGTTCTGGGAGAATGCGGTGACCGGAATAATACGATAGTTCATACTGCCCCTG 479
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      TTTCGTTAAGCAATTACTACCAGTGCCGTGCTGGCCCGGTATCAATATGCACAAAGTTAC 539
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      TACGTGGATAATATCCTACACCACCTGCGCGCATAGATAACGCGGCTTTGCGAATATTGC 599
consensus_2975#1      ------------------------------------------------------------
                                                                                  

consensus_2975#0      TTA 602
consensus_2975#1      ---