These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 893 fasta sequence [GTTTCCCTCCTTGCCGCCGCCGCCGCCGCCACCGCCGCCGCAGCCTCCTCTCGCTCCGCCTCACCGCCGCTCGACGCCATGGGCCGCATGCACAGCAGCGGGAAGGGGATGTCCTGCTCGGTGCTCCCCTACAGGCGCGCCGCTCCCGCCTGGGTCAAGACGTCCGCGTCGGAGGTGGAGGAGATGATCGTGCGCGTCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGGGCGATCCTCCGCGACGCCCACGCCGTCCCGCTCGCCCAGGGCGTCACCGGCGGCAAGATCCTCCGCGTGCTCAAGTCCCGCGGCCTCGCGCCCGAGGTGCCCGAGGACCTCTACTTCCTCATCAAGAAGGCCGTCGCGATGAGGAAGCACCTCGAGAGGAACAGGAAGGACAAGGACACCAAGTTCCGCCTCATCCTCGTCGAGAGCAGGGTGCACCGCCTCACCCGCTACTACCGCCTCGCCAAGAAGATCCCCGCCTTCTTCAAGTACGACTCCACCACCGCGAGCACTCTCGTGGCCTGAAGTGGAACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGACAGCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTACACCTTGACTTTGGGTAGTTCTTTCTAAAGATGTGTGATAATAGAAAATGCAGTATT] [+] EMBL AK063015 [GTTTCCCTCCTTGCCGCCGCCGCCGCCGCCACCGCCGCCGCAGCCTCCTCTCGCTCCGCCTCACCGCCGCTCGACGCCATGGGCCGCATGCACAGCAGCGGGAAGGGGATGTCCTGCTCGGTGCTCCCCTACAGGCGCGCCGCTCCCGCCTGGGTCAAGACGTCCGCGTCGGAGGTGGAGGAGATGATCGTGCGCGTCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGGGCGATCCTCCGCGACGCCCACGCCGTCCCGCTCGCCCAGGGCGTCACCGGCGGCAAGATCCTCCGCGTGCTCAAGTCCCGCGGCCTCGCGCCCGAGGTGCCCGAGGACCTCTACTTCCTCATCAAGAAGGCCGTCGCGATGAGGAAGCACCTCGAGAGGAACAGGAAGGACAAGGACACCAAGTTCCGCCTCATCCTCGTCGAGAGCAGGGTGCACCGCCTCACCCGCTACTACCGCCTCGCCAAGAAGATCCCCGCCTTCTTCAAGTACGACTCCACCACCGCGAGCACTCTCGTGGCCTGAAGTGGAACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGACAGCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTACACCTTGACTTTGGGTAGTTCTTTCTAAAGATGTGTGATAATAGAAAATGCAGTATT] consensusID : consensus_2986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [GCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU162378 [GCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2986#0 GTTTCCCTCCTTGCCGCCGCCGCCGCCGCCACCGCCGCCGCAGCCTCCTCTCGCTCCGCC 60 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 TCACCGCCGCTCGACGCCATGGGCCGCATGCACAGCAGCGGGAAGGGGATGTCCTGCTCG 120 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 GTGCTCCCCTACAGGCGCGCCGCTCCCGCCTGGGTCAAGACGTCCGCGTCGGAGGTGGAG 180 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 GAGATGATCGTGCGCGTCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGGGCGATCCTC 240 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 CGCGACGCCCACGCCGTCCCGCTCGCCCAGGGCGTCACCGGCGGCAAGATCCTCCGCGTG 300 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 CTCAAGTCCCGCGGCCTCGCGCCCGAGGTGCCCGAGGACCTCTACTTCCTCATCAAGAAG 360 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 GCCGTCGCGATGAGGAAGCACCTCGAGAGGAACAGGAAGGACAAGGACACCAAGTTCCGC 420 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 CTCATCCTCGTCGAGAGCAGGGTGCACCGCCTCACCCGCTACTACCGCCTCGCCAAGAAG 480 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 ATCCCCGCCTTCTTCAAGTACGACTCCACCACCGCGAGCACTCTCGTGGCCTGAAGTGGA 540 consensus_2986#1 ------------------------------------------------------------ consensus_2986#0 ACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGACAGCC 600 consensus_2986#1 ---------------------------------------------------------GCC 3 *** consensus_2986#0 ATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAAT 660 consensus_2986#1 ATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAAT 63 ************************************************************ consensus_2986#0 CTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTT 720 consensus_2986#1 CTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTT 123 ************************************************************ consensus_2986#0 GGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGA 780 consensus_2986#1 GGTGTAATGTGTTAAATCTACCTCCTGCACCTGAAGAGAAGTTGCTTACTGAGACTCGGA 183 ************************************************************ consensus_2986#0 TCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTACACC 840 consensus_2986#1 TCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTTAAAAA 243 ******************************************************** * consensus_2986#0 TTGACTTTGGGTAGTTCTTTCTAAAGATGTGTGATAATAGAAAATGCAGTATT------- 893 consensus_2986#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 303 * * *** * * ** * **** * * consensus_2986#0 ------- consensus_2986#1 AAAAAAA 310 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||