These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1727 fasta sequence [ACAGCATTGCCGACAAGTGTGGTGCTCAGTGAGTTACCACGGTAGAACAGAACCATGATGTACTTACCTCATGTATTTCTTGATCTCATGGATATCTCAATACCTCTTTGTGAGGTGTCCTCTGACGTGTAGTTCAACATAATTATTTAATTGCTCTTATTTTAATCAGAGAGATCGTTCTTATACTGCTTCTCAAGTTATTTGGAGTGTTTCCTAACCTTGCAGAGAAGCACATTTTTTTTCTGGCACATTATTACTCATCCACGACTGGAAGTAGGAAGGTAAGAGAGAACATACGGGGCTTGCAGGCTGAAATTTACTGGTAATGGCGTTTCTGGTCCTACCTGGATGCACTGGGTCTGCTCTGCTGAGGTTGCTATTTGGATCTGAAGAACTCAATGTAAGTACAAACATATGTTGGTGCATCCAGTGTTGAACTTTGGGTAGCTATGTTTTCCCATATATTTTAGCTTCGATACACAAAAATTAAATCATGTAGATTCGTCTGGAGAGATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTGGAATACGGCAAAATTTGCAAGGAGCCAGTGTTGGTTTACGATTCACGAATGCCAGAAAATGTTTTCGATGCTAGTAAGATGATTTTTTTTTTTTTTACCTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGCGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTACTGATGCATTTTCATCATGGTTAAGATAAGAGAAGGTTTATATAGGGCAGTAACAGCATTGGTCAAACGAAGACCTGTATTAATGTTAGCTCATTTTATTTGATGTTTATGGAGAAACGATGCATCTTTTTGCAGTTG] [+] EMBL AK110872 [ACAGCATTGCCGACAAGTGTGGTGCTCAGTGAGTTACCACGGTAGAACAGAACCATGATGTACTTACCTCATGTATTTCTTGATCTCATGGATATCTCAATACCTCTTTGTGAGGTGTCCTCTGACGTGTAGTTCAACATAATTATTTAATTGCTCTTATTTTAATCAGAGAGATCGTTCTTATACTGCTTCTCAAGTTATTTGGAGTGTTTCCTAACCTTGCAGAGAAGCACATTTTTTTTCTGGCACATTATTACTCATCCACGACTGGAAGTAGGAAGGTAAGAGAGAACATACGGGGCTTGCAGGCTGAAATTTACTGGTAATGGCGTTTCTGGTCCTACCTGGATGCACTGGGTCTGCTCTGCTGAGGTTGCTATTTGGATCTGAAGAACTCAATGTAAGTACAAACATATGTTGGTGCATCCAGTGTTGAACTTTGGGTAGCTATGTTTTCCCATATATTTTAGCTTCGATACACAAAAATTAAATCATGTAGATTCGTCTGGAGAGATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTGGAATACGGCAAAATTTGCAAGGAGCCAGTGTTGGTTTACGATTCACGAATGCCAGAAAATGTTTTCGATGCTAGTAAGATGATTTTTTTTTTTTTTACCTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGCGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTACTGATGCATTTTCATCATGGTTAAGATAAGAGAAGGTTTATATAGGGCAGTAACAGCATTGGTCAAACGAAGACCTGTATTAATGTTAGCTCATTTTATTTGATGTTTATGGAGAAACGATGCATCTTTTTGCAGTTG] consensusID : consensus_2988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence [GATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGTGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTAC] [-] EMBL AK106755 [GATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGTGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2988#0 ACAGCATTGCCGACAAGTGTGGTGCTCAGTGAGTTACCACGGTAGAACAGAACCATGATG 60 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 TACTTACCTCATGTATTTCTTGATCTCATGGATATCTCAATACCTCTTTGTGAGGTGTCC 120 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 TCTGACGTGTAGTTCAACATAATTATTTAATTGCTCTTATTTTAATCAGAGAGATCGTTC 180 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 TTATACTGCTTCTCAAGTTATTTGGAGTGTTTCCTAACCTTGCAGAGAAGCACATTTTTT 240 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 TTCTGGCACATTATTACTCATCCACGACTGGAAGTAGGAAGGTAAGAGAGAACATACGGG 300 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 GCTTGCAGGCTGAAATTTACTGGTAATGGCGTTTCTGGTCCTACCTGGATGCACTGGGTC 360 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 TGCTCTGCTGAGGTTGCTATTTGGATCTGAAGAACTCAATGTAAGTACAAACATATGTTG 420 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 GTGCATCCAGTGTTGAACTTTGGGTAGCTATGTTTTCCCATATATTTTAGCTTCGATACA 480 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 CAAAAATTAAATCATGTAGATTCGTCTGGAGAGATGCCTTCATATATTATGATGTCATTG 540 consensus_2988#1 --------------------------------GATGCCTTCATATATTATGATGTCATTG 28 **************************** consensus_2988#0 GCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTT--GGAGAACATATTATGCTCCA 598 consensus_2988#1 GCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTTTGGAGAACATATTATGCTCCA 88 ************************************** ******************** consensus_2988#0 TGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTAT 658 consensus_2988#1 TGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTAT 148 ************************************************************ consensus_2988#0 TAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGT 718 consensus_2988#1 TAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGT 208 ************************************************************ consensus_2988#0 GTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCT 778 consensus_2988#1 GTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCT 268 ************************************************************ consensus_2988#0 TCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCC 838 consensus_2988#1 TCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCC 328 ************************************************************ consensus_2988#0 CGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGG 898 consensus_2988#1 CGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGG 388 ************************************************************ consensus_2988#0 ATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTG 958 consensus_2988#1 ATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTG 448 ************************************************************ consensus_2988#0 CTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTGGAATACGGC 1018 consensus_2988#1 CTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACT---------- 498 ************************************************** consensus_2988#0 AAAATTTGCAAGGAGCCAGTGTTGGTTTACGATTCACGAATGCCAGAAAATGTTTTCGAT 1078 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 GCTAGTAAGATGATTTTTTTTTTTTTTACCTTGGCAAGACAGGACAGGGGGAGCGTAGAG 1138 consensus_2988#1 -------------------------------TGGCAAGACAGGACAGGGGGAGCGTAGAG 527 ***************************** consensus_2988#0 GAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGC 1198 consensus_2988#1 GAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGC 587 ************************************************************ consensus_2988#0 CAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCG 1258 consensus_2988#1 CAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCG 647 ************************************************************ consensus_2988#0 GTGGCCGGCGTCGAGCGCCTGGTTCAGCGACGAGCAGCAGGCGCCGCTGATGTTCCCTCC 1318 consensus_2988#1 GTGGCCGGCGTCGAGCGCCTGGTTCAGTGACGAGCAGCAGGCGCCGCTGATGTTCCCTCC 707 *************************** ******************************** consensus_2988#0 TGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTC 1378 consensus_2988#1 TGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTC 767 ************************************************************ consensus_2988#0 CAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGC 1438 consensus_2988#1 CAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGC 827 ************************************************************ consensus_2988#0 TCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCT 1498 consensus_2988#1 TCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCT 887 ************************************************************ consensus_2988#0 GCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCT 1558 consensus_2988#1 GCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCT 947 ************************************************************ consensus_2988#0 AATGATTTGATCCGTGTAATATGCTGGTTTACTGATGCATTTTCATCATGGTTAAGATAA 1618 consensus_2988#1 AATGATTTGATCCGTGTAATATGCTGGTTTAC---------------------------- 979 ******************************** consensus_2988#0 GAGAAGGTTTATATAGGGCAGTAACAGCATTGGTCAAACGAAGACCTGTATTAATGTTAG 1678 consensus_2988#1 ------------------------------------------------------------ consensus_2988#0 CTCATTTTATTTGATGTTTATGGAGAAACGATGCATCTTTTTGCAGTTG 1727 consensus_2988#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||