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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1727 fasta sequence
[ACAGCATTGCCGACAAGTGTGGTGCTCAGTGAGTTACCACGGTAGAACAGAACCATGATGTACTTACCTCATGTATTTCTTGATCTCATGGATATCTCAATACCTCTTTGTGAGGTGTCCTCTGACGTGTAGTTCAACATAATTATTTAATTGCTCTTATTTTAATCAGAGAGATCGTTCTTATACTGCTTCTCAAGTTATTTGGAGTGTTTCCTAACCTTGCAGAGAAGCACATTTTTTTTCTGGCACATTATTACTCATCCACGACTGGAAGTAGGAAGGTAAGAGAGAACATACGGGGCTTGCAGGCTGAAATTTACTGGTAATGGCGTTTCTGGTCCTACCTGGATGCACTGGGTCTGCTCTGCTGAGGTTGCTATTTGGATCTGAAGAACTCAATGTAAGTACAAACATATGTTGGTGCATCCAGTGTTGAACTTTGGGTAGCTATGTTTTCCCATATATTTTAGCTTCGATACACAAAAATTAAATCATGTAGATTCGTCTGGAGAGATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTGGAATACGGCAAAATTTGCAAGGAGCCAGTGTTGGTTTACGATTCACGAATGCCAGAAAATGTTTTCGATGCTAGTAAGATGATTTTTTTTTTTTTTACCTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGCGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTACTGATGCATTTTCATCATGGTTAAGATAAGAGAAGGTTTATATAGGGCAGTAACAGCATTGGTCAAACGAAGACCTGTATTAATGTTAGCTCATTTTATTTGATGTTTATGGAGAAACGATGCATCTTTTTGCAGTTG]
[+] EMBL AK110872 [ACAGCATTGCCGACAAGTGTGGTGCTCAGTGAGTTACCACGGTAGAACAGAACCATGATGTACTTACCTCATGTATTTCTTGATCTCATGGATATCTCAATACCTCTTTGTGAGGTGTCCTCTGACGTGTAGTTCAACATAATTATTTAATTGCTCTTATTTTAATCAGAGAGATCGTTCTTATACTGCTTCTCAAGTTATTTGGAGTGTTTCCTAACCTTGCAGAGAAGCACATTTTTTTTCTGGCACATTATTACTCATCCACGACTGGAAGTAGGAAGGTAAGAGAGAACATACGGGGCTTGCAGGCTGAAATTTACTGGTAATGGCGTTTCTGGTCCTACCTGGATGCACTGGGTCTGCTCTGCTGAGGTTGCTATTTGGATCTGAAGAACTCAATGTAAGTACAAACATATGTTGGTGCATCCAGTGTTGAACTTTGGGTAGCTATGTTTTCCCATATATTTTAGCTTCGATACACAAAAATTAAATCATGTAGATTCGTCTGGAGAGATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTGGAATACGGCAAAATTTGCAAGGAGCCAGTGTTGGTTTACGATTCACGAATGCCAGAAAATGTTTTCGATGCTAGTAAGATGATTTTTTTTTTTTTTACCTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGCGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTACTGATGCATTTTCATCATGGTTAAGATAAGAGAAGGTTTATATAGGGCAGTAACAGCATTGGTCAAACGAAGACCTGTATTAATGTTAGCTCATTTTATTTGATGTTTATGGAGAAACGATGCATCTTTTTGCAGTTG]
consensusID : consensus_2988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence
[GATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGTGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTAC]
[-] EMBL AK106755 [GATGCCTTCATATATTATGATGTCATTGGCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTTTGGAGAACATATTATGCTCCATGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTATTAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGTGTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCTTCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCCCGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGGATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTGCTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTTGGCAAGACAGGACAGGGGGAGCGTAGAGGAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGCCAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCGGTGGCCGGCGTCGAGCGCCTGGTTCAGTGACGAGCAGCAGGCGCCGCTGATGTTCCCTCCTGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTCCAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGCTCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCTGCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCTAATGATTTGATCCGTGTAATATGCTGGTTTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2988#0 ACAGCATTGCCGACAAGTGTGGTGCTCAGTGAGTTACCACGGTAGAACAGAACCATGATG 60
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 TACTTACCTCATGTATTTCTTGATCTCATGGATATCTCAATACCTCTTTGTGAGGTGTCC 120
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 TCTGACGTGTAGTTCAACATAATTATTTAATTGCTCTTATTTTAATCAGAGAGATCGTTC 180
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 TTATACTGCTTCTCAAGTTATTTGGAGTGTTTCCTAACCTTGCAGAGAAGCACATTTTTT 240
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 TTCTGGCACATTATTACTCATCCACGACTGGAAGTAGGAAGGTAAGAGAGAACATACGGG 300
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 GCTTGCAGGCTGAAATTTACTGGTAATGGCGTTTCTGGTCCTACCTGGATGCACTGGGTC 360
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 TGCTCTGCTGAGGTTGCTATTTGGATCTGAAGAACTCAATGTAAGTACAAACATATGTTG 420
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 GTGCATCCAGTGTTGAACTTTGGGTAGCTATGTTTTCCCATATATTTTAGCTTCGATACA 480
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 CAAAAATTAAATCATGTAGATTCGTCTGGAGAGATGCCTTCATATATTATGATGTCATTG 540
consensus_2988#1 --------------------------------GATGCCTTCATATATTATGATGTCATTG 28
****************************
consensus_2988#0 GCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTT--GGAGAACATATTATGCTCCA 598
consensus_2988#1 GCTGTTACAAAAATTAGTGGTCATAGTTTTTTTTTTTTTTGGAGAACATATTATGCTCCA 88
************************************** ********************
consensus_2988#0 TGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTAT 658
consensus_2988#1 TGACCAAAGGGGCAAGCCTATACACTATTTACCTGAACTTTGCAGTTACAAGCCTATTAT 148
************************************************************
consensus_2988#0 TAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGT 718
consensus_2988#1 TAACTGATCATATAATTGAGAACCAAAATGCAGCCATGACCACCACAAACGTCAGGAGGT 208
************************************************************
consensus_2988#0 GTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCT 778
consensus_2988#1 GTGTTCTGATCCCCTCGTCGACGTTGGTACGCCGGCGTGCTTCGCTGCGGCTGGCTGTCT 268
************************************************************
consensus_2988#0 TCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCC 838
consensus_2988#1 TCTTCTTAGCTCCGCCGTTGCCTTTGCCGTTGCCGCTGCCGTAGCCGTTGCCATAGTTCC 328
************************************************************
consensus_2988#0 CGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGG 898
consensus_2988#1 CGTTCATCCCCTGATCGTCATCAGCATTCTCACCGTCGGCGCTCCTCTTCGACTTCTTGG 388
************************************************************
consensus_2988#0 ATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTG 958
consensus_2988#1 ATGGAGGCATTACGACGGCCTGAGGTGGTGGTGAATCGACGGTGGTCTCGGTCGCGGTTG 448
************************************************************
consensus_2988#0 CTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACTGGAATACGGC 1018
consensus_2988#1 CTGCCTCTGTTGCTGCCGGTGGCGCGTCCGTCTGCTCCTGCACCGGCACT---------- 498
**************************************************
consensus_2988#0 AAAATTTGCAAGGAGCCAGTGTTGGTTTACGATTCACGAATGCCAGAAAATGTTTTCGAT 1078
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 GCTAGTAAGATGATTTTTTTTTTTTTTACCTTGGCAAGACAGGACAGGGGGAGCGTAGAG 1138
consensus_2988#1 -------------------------------TGGCAAGACAGGACAGGGGGAGCGTAGAG 527
*****************************
consensus_2988#0 GAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGC 1198
consensus_2988#1 GAGGCATCCAGGCAGCGGCAGCGCCAGCGGGAGCGTGGGGAGCGCCGCGGCGAGGCTGGC 587
************************************************************
consensus_2988#0 CAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCG 1258
consensus_2988#1 CAGCACGCGCACGCCGGCGCCACCGCCGTTCGACGGCAGCAGCAGCGAGCACAGGCAGCG 647
************************************************************
consensus_2988#0 GTGGCCGGCGTCGAGCGCCTGGTTCAGCGACGAGCAGCAGGCGCCGCTGATGTTCCCTCC 1318
consensus_2988#1 GTGGCCGGCGTCGAGCGCCTGGTTCAGTGACGAGCAGCAGGCGCCGCTGATGTTCCCTCC 707
*************************** ********************************
consensus_2988#0 TGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTC 1378
consensus_2988#1 TGCGATGCCGATGCCGGCGCCGGCGCCGGCGACCGCGTCCTGCAGGCACGGCGCCAGGTC 767
************************************************************
consensus_2988#0 CAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGC 1438
consensus_2988#1 CAGCCCCTCGAACATGCCGCAGCACGACGTGGGGATCGCCTGCGCCCTCGCCATTGCTGC 827
************************************************************
consensus_2988#0 TCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCT 1498
consensus_2988#1 TCCTCCTCCTCCACCGAGGAGGACCAGCAGATGGAGAAGAGCAGCGGCTGCGTGTAATCT 887
************************************************************
consensus_2988#0 GCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCT 1558
consensus_2988#1 GCAGCGCAAGTGATGATGATGCGGCAGATTAACTGGAGATGTCATGTTAATTAGCTGGCT 947
************************************************************
consensus_2988#0 AATGATTTGATCCGTGTAATATGCTGGTTTACTGATGCATTTTCATCATGGTTAAGATAA 1618
consensus_2988#1 AATGATTTGATCCGTGTAATATGCTGGTTTAC---------------------------- 979
********************************
consensus_2988#0 GAGAAGGTTTATATAGGGCAGTAACAGCATTGGTCAAACGAAGACCTGTATTAATGTTAG 1678
consensus_2988#1 ------------------------------------------------------------
consensus_2988#0 CTCATTTTATTTGATGTTTATGGAGAAACGATGCATCTTTTTGCAGTTG 1727
consensus_2988#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||