Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2992 cluster # 2992       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2992#0 length = 403 sequences # 1  
consensus_2992#1 length = 344 sequences # 1  

consensusID : consensus_2992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGATCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGGTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA]

[+] EMBL AU162518             [CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGATCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGGTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA]


>consensus_2992#0 CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTC GTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGA TCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGC TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG GTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATT TTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA



consensusID : consensus_2992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC]

[+] EMBL C27409               [NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC]


>consensus_2992#1 NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCT CTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCA AGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGG ATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATC TGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAA CGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2992#0      CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTC 60
consensus_2992#1      -------------------------NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTC 35
                                                *  *  * **************************

consensus_2992#0      GTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT 120
consensus_2992#1      GTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT 95
                      **************  ********************************************

consensus_2992#0      AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGA 180
consensus_2992#1      AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGT-GTNGGTTTCCCTCGGGCAGA 154
                      *************************************** ********************

consensus_2992#0      TCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGC 240
consensus_2992#1      TCCAGTGNCGACG-CTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCG-C 212
                      ******* *****  ******************** ********************** *

consensus_2992#0      TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG 300
consensus_2992#1      TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG 272
                      ************************************************************

consensus_2992#0      -GTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATC---GGTTGATTGTCCGATTG 356
consensus_2992#1      AGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTC 332
                       * * **    **  * *  * *          * *  *    *   **  *      * 

consensus_2992#0      GATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA 403
consensus_2992#1      GATCCT-TCCACC---------------------------------- 344
                      ***  * * **                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)