These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGATCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGGTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA] [+] EMBL AU162518 [CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGATCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGGTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATCGGTTGATTGTCCGATTGGATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA] consensusID : consensus_2992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC] [+] EMBL C27409 [NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTCGTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTTAGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTGTNGGTTTCCCTCGGGCAGATCCAGTGNCGACGCTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCGCTTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCGAGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTCGATCCTTCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2992#0 CCGCATCTCGCCTGCACGGCGCGACGATGGCGGGGTGCGGAGGAGACGACGGTGATAGTC 60 consensus_2992#1 -------------------------NACTGTTGNGTGCGGAGGAGACGACGGTGATAGTC 35 * * * ************************** consensus_2992#0 GTCCCTCCTCCTCCNGCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT 120 consensus_2992#1 GTCCCTCCTCCTCCACCTCCTCCCTCTCCCCGTCGGCCTCGATGGCCGTCCCTTCCTCTT 95 ************** ******************************************** consensus_2992#0 AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGTCGTNGGTTTCCCTCGGGCAGA 180 consensus_2992#1 AGGGACGGCACCCTCTCCACCCTCAAGATCCGACGGCGT-GTNGGTTTCCCTCGGGCAGA 154 *************************************** ******************** consensus_2992#0 TCCAGTGCCGACGGTTTCCTGCGGCGGATCCAACGGCAACGTAGAAATCGCCGATCCGGC 240 consensus_2992#1 TCCAGTGNCGACG-CTTCCTGCGGCGGATCCAACGNCAACGTAGAAATCGCCGATCCG-C 212 ******* ***** ******************** ********************** * consensus_2992#0 TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG 300 consensus_2992#1 TTCACCGATGGCGCCTCGTGGACGGATCTGGTGGCGACGACGATGTTGGTGGCTTTCCCG 272 ************************************************************ consensus_2992#0 -GTGATGTTTTTGTTCTTCTTCATGTTCTTTTTCTCAATC---GGTTGATTGTCCGATTG 356 consensus_2992#1 AGCGGTGGACCTGAGCGTAGTGAGAGAACGNCGCACGGTTCCAGAGCGAGNGCGAATCTC 332 * * ** ** * * * * * * * * ** * * consensus_2992#0 GATTTTGTTCAGTAATGAATCGGTGCGAATTTATGGGTGCTTTAAAA 403 consensus_2992#1 GATCCT-TCCACC---------------------------------- 344 *** * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||