These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CCCCAATAAGTTCCAAATGCCAAGCCACAACCAAATGTGGTGGCCCCAAAACAAAGGCCTTCCAAGGCCTTGGTTAGCCGCCACACCACAATCCTCAACCTAACCCAAGCCCCCACTTTAGTTTAGCCCTTTCAGGCCAGAATTTGTCCCAAGCAAAACTTAACCAGCTGGCAACCAAGGTCAGGTTTTGTCTTACATTTGATCAAGACTCATAGCTCAAAGCTCAAAGCATTTGCTGCGCACATTATAACTGTGCCATGCACATGATGTGGGTATGCTATCCTGAACTGACTGACACTTGTCTGCCGAGGACGCTATGTCCCCACCCGTTGGGTGGTGTGCTGGGTGACCTGGAATGTGGTGAATGAGTGATGAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCAATGCATGCATGCAATGGCAGTGGACACAAGTTGGAAACTTGATGTCATATAAATCTAAATAAAATCACCTATTTAAATAAAAAAAAAA] [+] EMBL BI803149 [CCCCAATAAGTTCCAAATGCCAAGCCACAACCAAATGTGGTGGCCCCAAAACAAAGGCCTTCCAAGGCCTTGGTTAGCCGCCACACCACAATCCTCAACCTAACCCAAGCCCCCACTTTAGTTTAGCCCTTTCAGGCCAGAATTTGTCCCAAGCAAAACTTAACCAGCTGGCAACCAAGGTCAGGTTTTGTCTTACATTTGATCAAGACTCATAGCTCAAAGCTCAAAGCATTTGCTGCGCACATTATAACTGTGCCATGCACATGATGTGGGTATGCTATCCTGAACTGACTGACACTTGTCTGCCGAGGACGCTATGTCCCCACCCGTTGGGTGGTGTGCTGGGTGACCTGGAATGTGGTGAATGAGTGATGAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCAATGCATGCATGCAATGGCAGTGGACACAAGTTGGAAACTTGATGTCATATAAATCTAAATAAAATCACCTATTTAAATAAAAAAAAAA] consensusID : consensus_2993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CTGCAAAGTCTTCCAAAACTTTGCTGGCCCACTTGAAACTGGCGCCAATCCCAATATGGGGGGTATCTTATCCCTTGGACTACTAACAATTTGGCTCACAGAGGAGCAATTCCCACACCCAGTGGGTGGGTGTTCTGGGTACTGGAATGTGTGAATGAGTGATAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCATGGCAATCAATGCATGCGTGCGACAGGGGAAACGGAGGGCAAAAAAGCGAAATAAGCACCGAGGGAAAGACCCAAAAAAAAAA] [+] EMBL BI801936 [CTGCAAAGTCTTCCAAAACTTTGCTGGCCCACTTGAAACTGGCGCCAATCCCAATATGGGGGGTATCTTATCCCTTGGACTACTAACAATTTGGCTCACAGAGGAGCAATTCCCACACCCAGTGGGTGGGTGTTCTGGGTACTGGAATGTGTGAATGAGTGATAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCATGGCAATCAATGCATGCGTGCGACAGGGGAAACGGAGGGCAAAAAAGCGAAATAAGCACCGAGGGAAAGACCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2993#0 CCCCAATAAGTTCCAAATGCCAAGCCACAACCAAATGTGGTGGCCCCAAAACAAAGGCCT 60 consensus_2993#1 ------------------------------------------------------------ consensus_2993#0 TCCAAGGCCTTGGTTAGCCGCCACACCACAATCCTCAACCTAACCCAAGCCCCCACTTTA 120 consensus_2993#1 ------------------------------------------------------------ consensus_2993#0 GTTTAGCCCTTTCAGGCCAGAATTTGTCCCAAGCAAAACTTAACCAGCTGGCAACCAAGG 180 consensus_2993#1 ------------------------------------------------------------ consensus_2993#0 TCAGGTTTTGTCTTACATTTGATCAAGACTCATAGCTCAAAGCTCAAAGCATTTGCTGCG 240 consensus_2993#1 --------------------------------CTGCAAAGTCTTCCAAAACTTTGCTGGC 28 ** * ** ** ******* consensus_2993#0 CACATTATAACTG-TGCCATGCACATGATGTGGG-TATGCTATCC--TGAACTGACTGAC 296 consensus_2993#1 CCACTTGAAACTGGCGCCAATCCCAATATGGGGGGTATCTTATCCCTTGGACT-ACTAAC 87 * ** ***** **** * ** *** *** *** ***** ** *** *** ** consensus_2993#0 A-CTTGTCTGCCGAGGACGCTATGTCCCCACCCGTTGGGTGG-TGTGCTGGGTGACCTGG 354 consensus_2993#1 AATTTGGCTCACAGAGGAGCAATTCCCACACCCAGTGGGTGGGTGTTCTGGGTA--CTGG 145 * *** ** * * ** ** ** ***** ******* *** ****** **** consensus_2993#0 AATGTGGTGAATGAGTGATGAATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCAATGCA 414 consensus_2993#1 AATGTG-TGAATGAGTGAT-AATGGGTGTGCAAAATGGTTGAAAAATAAAGTGCATGGCA 203 ****** ************ *********************************** *** consensus_2993#0 -----TGCATGCA-ATGGCAGTGGACACAAGTTGGAAACTTGATGTCATATAAATCTAAA 468 consensus_2993#1 ATCAATGCATGCGTGCGACAGGGGAAACGGAGGGCAAA---AAAGCGAAATAAGCACCGA 260 ******* * *** *** ** * *** * * * **** * consensus_2993#0 TAAAATCACCTATTTAAATAAAAAAAAAA 497 consensus_2993#1 GGGAAAGACCCA---AAAAAAAAA----- 281 ** *** * *** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||