These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [TTGACGGTGCAACCAGATTGGATATTTGAGTGTTGCATTACAAAGTTGATGCCAACACAATTTTCATCACCCAGTGACCCTTCGCCAAAAATGTCGCAACAAAATCTAACCCACCGGAGCTCAGCTTAGCTCACCTTAGTGTAGTTTATGGCGTTTCTTGCCCCATGTATATGGGAATCTTGGGATGCACCGCCGCTGCATCCCTAGTTGAGAAATACATCAGCAGAATGCAAAATACAATATGCCTCCTCTGCTCAGGAACGACACCTCAAGCTACATGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTATGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCTAGCTCTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTGAATCTCCGAAGAATATGGAGGTGGCATCATAAGCACCGCCTTTCCTTTACTAAAGGTGTACTTGACCTGATGCCGTTGCTTCCACTTGGGGAAAAAAGATGACCCCAAGAGCTCAAATATGTGATCTCTCATTTCATCATTAGTCACAAGCAAACAATTCAACCTAATCGCCGCATACAGCCAATACCAGTCATCATTTGACCCAATTGGTGAAGTGTACAATGCCCCGTTCGCTCTCCAGGTTTCAATCAGGTGTCTATTAGATGCATTTTCCATAAGCTTGGC] [+] EMBL CB670676 [TTGACGGTGCAACCAGATTGGATATTTGAGTGTTGCATTACAAAGTTGATGCCAACACAATTTTCATCACCCAGTGACCCTTCGCCAAAAATGTCGCAACAAAATCTAACCCACCGGAGCTCAGCTTAGCTCACCTTAGTGTAGTTTATGGCGTTTCTTGCCCCATGTATATGGGAATCTTGGGATGCACCGCCGCTGCATCCCTAGTTGAGAAATACATCAGCAGAATGCAAAATACAATATGCCTCCTCTGCTCAGGAACGACACCTCAAGCTACATGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTATGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCTAGCTCTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTGAATCTCCGAAGAATATGGAGGTGGCATCATAAGCACCGCCTTTCCTTTACTAAAGGTGTACTTGACCTGATGCCGTTGCTTCCACTTGGGGAAAAAAGATGACCCCAAGAGCTCAAATATGTGATCTCTCATTTCATCATTAGTCACAAGCAAACAATTCAACCTAATCGCCGCATACAGCCAATACCAGTCATCATTTGACCCAATTGGTGAAGTGTACAATGCCCCGTTCGCTCTCCAGGTTTCAATCAGGTGTCTATTAGATGCATTTTCCATAAGCTTGGC] consensusID : consensus_2996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [TTACAGAGGTGCAANTGACCNTCCATTATATATGAAGAAATTGACGGGTGCAACCAGATTGGATATTCGGAGTGTTACATTACAAAGTTGATGCCAACACAAAATTTTCATCACNCAGTGCCCCTTCGCCAAAAATGTCGCANCANAATCTAACCCACCGGAGCTCAGCTTAGCTCGCCTTAGTGTAGTNTACGGCGTTTCTCGTCCCGTGTATATGGGGATTTTGGGATGCACCGCCGCTGCTTCCCTAGTTGAGAAATACATCAGCAGAATGCAAAACACAATATGCCTTCTCTGCTCAGGAACGACACCTCAAGCTACATGCAGCTGCCTGGAAGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTACGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCNAGCTCGTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTAATCTCTAAGAATATGGGGGGGCATCATAGCACCGCCTTTCCTTNCCCCCTGTCNNGTCCNCCCCNAACAAGCNTNCGANTCC] [-] EMBL CA764846 [TTACAGAGGTGCAANTGACCNTCCATTATATATGAAGAAATTGACGGGTGCAACCAGATTGGATATTCGGAGTGTTACATTACAAAGTTGATGCCAACACAAAATTTTCATCACNCAGTGCCCCTTCGCCAAAAATGTCGCANCANAATCTAACCCACCGGAGCTCAGCTTAGCTCGCCTTAGTGTAGTNTACGGCGTTTCTCGTCCCGTGTATATGGGGATTTTGGGATGCACCGCCGCTGCTTCCCTAGTTGAGAAATACATCAGCAGAATGCAAAACACAATATGCCTTCTCTGCTCAGGAACGACACCTCAAGCTACATGCAGCTGCCTGGAAGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTACGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCNAGCTCGTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTAATCTCTAAGAATATGGGGGGGCATCATAGCACCGCCTTTCCTTNCCCCCTGTCNNGTCCNCCCCNAACAAGCNTNCGANTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2996#0 ----------------------------------------TTGACGG-TGCAACCAGATT 19 consensus_2996#1 TTACAGAGGTGCAANTGACCNTCCATTATATATGAAGAAATTGACGGGTGCAACCAGATT 60 ******* ************ consensus_2996#0 GGATATTTG-AGTGTTGCATTACAAAGTTGATGCCAACACAA--TTTTCATCACCCAGTG 76 consensus_2996#1 GGATATTCGGAGTGTTACATTACAAAGTTGATGCCAACACAAAATTTTCATCACNCAGTG 120 ******* * ****** ************************* ********** ***** consensus_2996#0 ACCCTTCGCCAAAAATGTCGCAACAAAATCTAACCCACCGGAGCTCAGCTTAGCTCACCT 136 consensus_2996#1 CCCCTTCGCCAAAAATGTCGCANCANAATCTAACCCACCGGAGCTCAGCTTAGCTCGCCT 180 ********************* ** ****************************** *** consensus_2996#0 TAGTGTAGTTTATGGCGTTTCTTGCCCCATGTATATGGGAATCTTGGGATGCACCGCCGC 196 consensus_2996#1 TAGTGTAGTNTACGGCGTTTCTCGTCCCGTGTATATGGGGATTTTGGGATGCACCGCCGC 240 ********* ** ********* * *** ********** ** ***************** consensus_2996#0 TGCATCCCTAGTTGAGAAATACATCAGCAGAATGCAAAATACAATATGCCTCCTCTGCTC 256 consensus_2996#1 TGCTTCCCTAGTTGAGAAATACATCAGCAGAATGCAAAACACAATATGCCTTCTCTGCTC 300 *** *********************************** *********** ******** consensus_2996#0 AGGAACGACACCTCAAGCTACATG--------------GCGATCAATTTCTATCCTTTCT 302 consensus_2996#1 AGGAACGACACCTCAAGCTACATGCAGCTGCCTGGAAGGCGATCAATTTCTATCCTTTCT 360 ************************ ********************** consensus_2996#0 TTTACCGGTTAAGGAGCCACCATTATGTTCTGCTCGCCTCTGCTCACATCCATGAGATGC 362 consensus_2996#1 TTTACCGGTTAAGGAGCCACCATTACGTTCTGCTCGCCTCTGCTCACATCCATGAGATGC 420 ************************* ********************************** consensus_2996#0 CTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTT 422 consensus_2996#1 CTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTT 480 ************************************************************ consensus_2996#0 GCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCTAGCTC-TGTCATCACCAGATTTCT 481 consensus_2996#1 GCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCNAGCTCGTGTCATCACCAGATTTCT 540 *********************************** ***** ****************** consensus_2996#0 CCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTGAATCTCCGAAGAATATGGAG 541 consensus_2996#1 CCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCT-AATCTCT-AAGAATATGGGG 598 *************************************** ****** ********** * consensus_2996#0 GTGGCATCATAAGCACCGCCTTTCCTTTACTAAAGGTGTACTTGACCTGAT---GCCGTT 598 consensus_2996#1 G-GGCATCATA-GCACCGCCTTTCCTTNCCCCCTGTCNNGTCCNCCCCNAACAAGCNTNC 656 * ********* *************** * * ** * ** consensus_2996#0 GCTTCCACTTGGGGAAAAAAGATGACCCCAAGAGCTCAAATATGTGATCTCTCATTTCAT 658 consensus_2996#1 GANTCC------------------------------------------------------ 662 * *** consensus_2996#0 CATTAGTCACAAGCAAACAATTCAACCTAATCGCCGCATACAGCCAATACCAGTCATCAT 718 consensus_2996#1 ------------------------------------------------------------ consensus_2996#0 TTGACCCAATTGGTGAAGTGTACAATGCCCCGTTCGCTCTCCAGGTTTCAATCAGGTGTC 778 consensus_2996#1 ------------------------------------------------------------ consensus_2996#0 TATTAGATGCATTTTCCATAAGCTTGGC 806 consensus_2996#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||