cluster # 3003

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Oryza sativa
cluster # 3003 cluster # 3003 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3003#0 length = 428 sequences # 1

consensus_3003#1 length = 381 sequences # 1

consensusID : consensus_3003#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [GCTACTGATCNNANTNGGNATATATANANCNTGGTGNGNTTTTTTATTNAACNTGCTTTGNTNGGCNGGTNTTCCGGGCGTGTANCANATTATTGGTTGCCGGATCCAGNGAGCTTGTCTTTGCAGATCAGAGCAATAGTGGGAGAGGAATGGCGTCGAGACTGCTGGAGAGCCAAAAGGATTGGAAGGGCTTGTGGAAAATCAATGCGCCGGGAAAGATGAAAATTATTCTCTGGCGTGCTGCTCATGAATGCTTGGCGACTGGGTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTGTTTTTTGCAACAGAGATGACACAGTGGAACATGTCTTCCTGTTCTGCCCCTTTTGTTGCTCAAATCTGGGGAGGAAATCAAAAGAAAGTGTGCTGTCAACTAGGAAGAATTGGTTCTCA]

[+] EMBL C28601               [GCTACTGATCNNANTNGGNATATATANANCNTGGTGNGNTTTTTTATTNAACNTGCTTTGNTNGGCNGGTNTTCCGGGCGTGTANCANATTATTGGTTGCCGGATCCAGNGAGCTTGTCTTTGCAGATCAGAGCAATAGTGGGAGAGGAATGGCGTCGAGACTGCTGGAGAGCCAAAAGGATTGGAAGGGCTTGTGGAAAATCAATGCGCCGGGAAAGATGAAAATTATTCTCTGGCGTGCTGCTCATGAATGCTTGGCGACTGGGTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTGTTTTTTGCAACAGAGATGACACAGTGGAACATGTCTTCCTGTTCTGCCCCTTTTGTTGCTCAAATCTGGGGAGGAAATCAAAAGAAAGTGTGCTGTCAACTAGGAAGAATTGGTTCTCA]




>consensus_3003#0
GCTACTGATCNNANTNGGNATATATANANCNTGGTGNGNTTTTTTATTNAACNTGCTTTG
NTNGGCNGGTNTTCCGGGCGTGTANCANATTATTGGTTGCCGGATCCAGNGAGCTTGTCT
TTGCAGATCAGAGCAATAGTGGGAGAGGAATGGCGTCGAGACTGCTGGAGAGCCAAAAGG
ATTGGAAGGGCTTGTGGAAAATCAATGCGCCGGGAAAGATGAAAATTATTCTCTGGCGTG
CTGCTCATGAATGCTTGGCGACTGGGTTTCAACTTCCACGGCGGCATATCCCCTCTACTG
ATGGCTGTGTTTTTTGCAACAGAGATGACACAGTGGAACATGTCTTCCTGTTCTGCCCCT
TTTGTTGCTCAAATCTGGGGAGGAAATCAAAAGAAAGTGTGCTGTCAACTAGGAAGAATT
GGTTCTCA

consensusID : consensus_3003#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [GCGGNACGNNCNCNANCCATNANAANAANCNTNGGTGNTTNANACTCTNTCCGTTTNTGNTTNCAATATGGTGCNATCAGAAGCTTTCTTTNCAGATCAAAGCAATAGTGGGAGAGGAATGGNGTCGAGACTNCTGGAGAGCCAAAAGNATTGGAAGGGCTTNTGGAAAATNAATNCGCCGGGAAANATGAAAATAATTCTCTGGNGTGCTGCTCATNAATGCTTGGCGACTGGNTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTNTTTTTNGCAACAAAGATGACACAGTGGACATGTCTTCCTGTTCTGCCCTTTGCTGCTCAAATNTGGGAGGAAATCAAAAGAAAGTGTGCTGTCAAACTAGGAG]

[+] EMBL AU069348             [GCGGNACGNNCNCNANCCATNANAANAANCNTNGGTGNTTNANACTCTNTCCGTTTNTGNTTNCAATATGGTGCNATCAGAAGCTTTCTTTNCAGATCAAAGCAATAGTGGGAGAGGAATGGNGTCGAGACTNCTGGAGAGCCAAAAGNATTGGAAGGGCTTNTGGAAAATNAATNCGCCGGGAAANATGAAAATAATTCTCTGGNGTGCTGCTCATNAATGCTTGGCGACTGGNTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTNTTTTTNGCAACAAAGATGACACAGTGGACATGTCTTCCTGTTCTGCCCTTTGCTGCTCAAATNTGGGAGGAAATCAAAAGAAAGTGTGCTGTCAAACTAGGAG]




>consensus_3003#1
GCGGNACGNNCNCNANCCATNANAANAANCNTNGGTGNTTNANACTCTNTCCGTTTNTGN
TTNCAATATGGTGCNATCAGAAGCTTTCTTTNCAGATCAAAGCAATAGTGGGAGAGGAAT
GGNGTCGAGACTNCTGGAGAGCCAAAAGNATTGGAAGGGCTTNTGGAAAATNAATNCGCC
GGGAAANATGAAAATAATTCTCTGGNGTGCTGCTCATNAATGCTTGGCGACTGGNTTTCA
ACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTNTTTTTNGCAACAAAGATGACAC
AGTGGACATGTCTTCCTGTTCTGCCCTTTGCTGCTCAAATNTGGGAGGAAATCAAAAGAA
AGTGTGCTGTCAAACTAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3003#0      GCTACTGATCNNANTNGGNATATATANANCNTGGTGNGNTTT-TTTATTNAACNTGCTTT 59
consensus_3003#1      ----------------------------GCGGNACGNNCNCNANCCATNANAANAANCNT 32
                                                   *     **         **   * *     *

consensus_3003#0      GNTNGGCNGGTNTTCCGGGCGTGTANCANATTATTGGTTGCCGGATCCAGNGAGCTTGTC 119
consensus_3003#1      NGGTGNTTNANACTCTNTCCGTTTNT--GNTTNCAATATGGTGCNATCAGA-AGCTT-TC 88
                          *        **    *** *      **      **  *    ***  ***** **

consensus_3003#0      TTTGCAGATCAGAGCAATAGTGGGAGAGGAATGGCGTCGAGACTGCTGGAGAGCCAAAAG 179
consensus_3003#1      TTTNCAGATCAAAGCAATAGTGGGAGAGGAATGGNGTCGAGACTNCTGGAGAGCCAAAAG 148
                      *** ******* ********************** ********* ***************

consensus_3003#0      GATTGGAAGGGCTTGTGGAAAATCAATGCGCCGGGAAAGATGAAAATTATTCTCTGGCGT 239
consensus_3003#1      NATTGGAAGGGCTTNTGGAAAATNAATNCGCCGGGAAANATGAAAATAATTCTCTGGNGT 208
                       ************* ******** *** ********** ******** ********* **

consensus_3003#0      GCTGCTCATGAATGCTTGGCGACTGGGTTTCAACTTCCACGGCGGCATATCCCCTCTACT 299
consensus_3003#1      GCTGCTCATNAATGCTTGGCGACTGGNTTTCAACTTCCACGGCGGCATATCCCCTCTACT 268
                      ********* **************** *********************************

consensus_3003#0      GATGGCTGTGTTTTTTGCAACAGAGATGACACAGTGGAACATGTCTTCCTGTTCTGCCCC 359
consensus_3003#1      GATGGCTGTNTTTTTNGCAACAAAGATGACACAGTGGA-CATGTCTTCCTGTTCTGCCC- 326
                      ********* ***** ****** *************** ******************** 

consensus_3003#0      TTTTGTTGCTCAAATCTGGGGAGGAAATCAAAAGAAAGTGTGCTGTCAA-CTAGGAAGAA 418
consensus_3003#1      -TTTGCTGCTCAAATNTGGG-AGGAAATCAAAAGAAAGTGTGCTGTCAAACTAGGAG--- 381
                       **** ********* **** **************************** ******    

consensus_3003#0      TTGGTTCTCA 428
consensus_3003#1      ----------