These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2337 fasta sequence [CTCGGTCACTCAACTTCTATGGACTAGCTGAGTGTCTGCCTTCGACTTTGCAGTTCAAGCAACTTAGAGTTCTAATACTTGAATTTTGGGATGATCAAGAGGAGTTTGATCTCAGAGGAATTTTCAGATTGTTACAACTGAGATACGTGCAGGTTACAACTGATATGATCGTTAAGCTACCAGCCACCGTACAGAGCCTACAATATTTGGAAACACTGCAACTAAATGCAAGAGTAGCGAATGTTCCATCGGATATTGTTCATCTCCCGAAATTATTGCACTTACGTCTTCGAGATGTGGCAAATCTGCCTGACAACATTGGCTGCATGGCATCTCTATGCACGCTAGAGTCATTAGACCTCAGCAATAACTCTGAACAAAATGTGTGGGGTCTTGGAGAGATGACGAACCTGCAAGAACTTTATCTCAACTGCTCTACAGAATTGTCTGGCCGCCTGAAGAGAAATCTTACCGCTCTAGCTTCTTCTCTAGGGAAACTTCGTAAACTAAGAACTCTTATTCTGGCTCCTTCTTCAGGCACGAGCATGTACATGGATTGCTCGAGCATCGTTTCATCTCCGCCCCTCTGTCTTCAGAGACTTGAGTTATTACCTACCATTTGCATCTTTTCCAGACTGCCCAAATGGATCGGACAGTTAAAGAGACTCCGCATTCTGAAAATTGTTGTTAGAGAACTGCTATGCAGTGATGTTCATAGCCTCACAATGTTACAGGAGCTCACTGTTCTCTCATTGGATGTCCAGCAATCCACTGAAGAAACAATTGTCTTTAACGACAAGGCATTCCCAGTTCTCAAGTATTTCAAATTCAGATGTGGTGTGCTGCGTCTTGCTTTTCAGGCGGAGGCAATGCCAAATCTCCGGAAGCTCAAGATAGAATTCAATGTCCACAGGGGGGAACAGTATGGTGATATTCTTACCGGCATTGAACACCTGTTGAACCTTCAAGAGATCATTGGACAAATTGGAGCTGCTGCGGGTGCAGAGGAATCTGACAAGAGAGCCGCTGAGTTTGCGTTAAGTGATGCCACTAAGAAGCATTCGAGGATTTCTAGATTCAACATACGATGGATTAATTGTGTTGAAGAAGATGTCAGGGTTTCCAAGATTTCAGATTTACAAGGAATATCTTCAAGTTCAGATGAAGAAAAGCAAAAGGCTAATGAGCCAAGTGGGACAGATATTACGATTGAGGACGAGTCGCCATTTTCTCACGAGCCAAATTATGATGTTCCACGGGCATACAAGGCAGAGATAGAAAGCGAAGAAGTTCCTCACGCGGAATTAGCAGATGCCTCTCGCACAAGCGATTCAATCGACAATCGTCGACGGCAACGCCGGTCAATCGAGCCTTCTTTCTCCCGCGATCGCCTCAGCCAGCCGAGGAAGCACTCGGTCGCGTCCGCCGTGCCAAAGTTCGGCGAGTGGGACTCGCCGCTCCGCCCGGCAGACAACTACACAAGCATCTTTAACAGGGCGAGGGAAGAAAAGCGTAGTCAGGTAGAGAAGCCGTCGGTGTTTGACAAGGATGACCTACTGGTTAGAAGAACCAGAAATCGCAACGACGGCCACGCCTCCACGAAATGCTCCTGCTTTGGATGGTGCAAATAGAGATGCATCGACGTTAAAGGCTGTGTTTAATAAGAGAGGAATAGAAAAGATTGAGGCATTTAGTCAGGCTGTTAATTATCAATTTTGGGCATCAGCGGCACCATATCCGCCCATGGTGAGGCGAACCAGGCAGCGGCGGCGGCTGGCTGGGAATGGCTGCGACGTGCGAGGAGAGGAGGTGTTGGTCTGGCAGCGGGATATATACGGCACGCCCAGCCTCCTAGGCGTCGGATTTGAAGGAAGGCGAGATAAGGGAAGACGGGCGACGGCGCGCGGCATGCGGCGTCTGCTCGTCATCTCTGTTCTCCAGCTCCGCCGCGCGCGAAGACCTCCTTGCAGGTACCTCCCTATGGTGGTCAGCGTCCACCACAACCAAACCAGCCATTGATGGGGATGGAGGGGGACGCGGACGGACGGACGGACGGAGGAGGCTGGCGCCATCGCGGCGACCACAGGCTCCGAGGATGGGACGAGCTCCTGCGGCTGCGGCAACAGGAGAGCCGACGCCTGTAGATATTTTGTTTTCTTTTTCTTTTCTCTCTCTCTCTCTCTCTCGCATTTTGCAGCATGAGCCTGCTTCACCATACCCAATTTTTTTATACGTGATTCACTGTATCATTGGATACACATATCACATGTATCAAATTGCAATCCAGTGGAGTAAAAAAAAATTACTATTGATTTTATTGTCCAAGTAAATAGAACA] [+] EMBL AK109807 [CTCGGTCACTCAACTTCTATGGACTAGCTGAGTGTCTGCCTTCGACTTTGCAGTTCAAGCAACTTAGAGTTCTAATACTTGAATTTTGGGATGATCAAGAGGAGTTTGATCTCAGAGGAATTTTCAGATTGTTACAACTGAGATACGTGCAGGTTACAACTGATATGATCGTTAAGCTACCAGCCACCGTACAGAGCCTACAATATTTGGAAACACTGCAACTAAATGCAAGAGTAGCGAATGTTCCATCGGATATTGTTCATCTCCCGAAATTATTGCACTTACGTCTTCGAGATGTGGCAAATCTGCCTGACAACATTGGCTGCATGGCATCTCTATGCACGCTAGAGTCATTAGACCTCAGCAATAACTCTGAACAAAATGTGTGGGGTCTTGGAGAGATGACGAACCTGCAAGAACTTTATCTCAACTGCTCTACAGAATTGTCTGGCCGCCTGAAGAGAAATCTTACCGCTCTAGCTTCTTCTCTAGGGAAACTTCGTAAACTAAGAACTCTTATTCTGGCTCCTTCTTCAGGCACGAGCATGTACATGGATTGCTCGAGCATCGTTTCATCTCCGCCCCTCTGTCTTCAGAGACTTGAGTTATTACCTACCATTTGCATCTTTTCCAGACTGCCCAAATGGATCGGACAGTTAAAGAGACTCCGCATTCTGAAAATTGTTGTTAGAGAACTGCTATGCAGTGATGTTCATAGCCTCACAATGTTACAGGAGCTCACTGTTCTCTCATTGGATGTCCAGCAATCCACTGAAGAAACAATTGTCTTTAACGACAAGGCATTCCCAGTTCTCAAGTATTTCAAATTCAGATGTGGTGTGCTGCGTCTTGCTTTTCAGGCGGAGGCAATGCCAAATCTCCGGAAGCTCAAGATAGAATTCAATGTCCACAGGGGGGAACAGTATGGTGATATTCTTACCGGCATTGAACACCTGTTGAACCTTCAAGAGATCATTGGACAAATTGGAGCTGCTGCGGGTGCAGAGGAATCTGACAAGAGAGCCGCTGAGTTTGCGTTAAGTGATGCCACTAAGAAGCATTCGAGGATTTCTAGATTCAACATACGATGGATTAATTGTGTTGAAGAAGATGTCAGGGTTTCCAAGATTTCAGATTTACAAGGAATATCTTCAAGTTCAGATGAAGAAAAGCAAAAGGCTAATGAGCCAAGTGGGACAGATATTACGATTGAGGACGAGTCGCCATTTTCTCACGAGCCAAATTATGATGTTCCACGGGCATACAAGGCAGAGATAGAAAGCGAAGAAGTTCCTCACGCGGAATTAGCAGATGCCTCTCGCACAAGCGATTCAATCGACAATCGTCGACGGCAACGCCGGTCAATCGAGCCTTCTTTCTCCCGCGATCGCCTCAGCCAGCCGAGGAAGCACTCGGTCGCGTCCGCCGTGCCAAAGTTCGGCGAGTGGGACTCGCCGCTCCGCCCGGCAGACAACTACACAAGCATCTTTAACAGGGCGAGGGAAGAAAAGCGTAGTCAGGTAGAGAAGCCGTCGGTGTTTGACAAGGATGACCTACTGGTTAGAAGAACCAGAAATCGCAACGACGGCCACGCCTCCACGAAATGCTCCTGCTTTGGATGGTGCAAATAGAGATGCATCGACGTTAAAGGCTGTGTTTAATAAGAGAGGAATAGAAAAGATTGAGGCATTTAGTCAGGCTGTTAATTATCAATTTTGGGCATCAGCGGCACCATATCCGCCCATGGTGAGGCGAACCAGGCAGCGGCGGCGGCTGGCTGGGAATGGCTGCGACGTGCGAGGAGAGGAGGTGTTGGTCTGGCAGCGGGATATATACGGCACGCCCAGCCTCCTAGGCGTCGGATTTGAAGGAAGGCGAGATAAGGGAAGACGGGCGACGGCGCGCGGCATGCGGCGTCTGCTCGTCATCTCTGTTCTCCAGCTCCGCCGCGCGCGAAGACCTCCTTGCAGGTACCTCCCTATGGTGGTCAGCGTCCACCACAACCAAACCAGCCATTGATGGGGATGGAGGGGGACGCGGACGGACGGACGGACGGAGGAGGCTGGCGCCATCGCGGCGACCACAGGCTCCGAGGATGGGACGAGCTCCTGCGGCTGCGGCAACAGGAGAGCCGACGCCTGTAGATATTTTGTTTTCTTTTTCTTTTCTCTCTCTCTCTCTCTCTCGCATTTTGCAGCATGAGCCTGCTTCACCATACCCAATTTTTTTATACGTGATTCACTGTATCATTGGATACACATATCACATGTATCAAATTGCAATCCAGTGGAGTAAAAAAAAATTACTATTGATTTTATTGTCCAAGTAAATAGAACA] consensusID : consensus_3014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [ACNNNNNNGAGTNNNANTACNNNNNTTTTGGGGTCATCAAGAGGAGTATGANNNAAGAGAAATTTCCAGATTGTGTCAACTGAGATACGTGCAGGTTACAACTGATATGATTGTTCAGCTACCAGCCAAAATTCGGGGCCTACAGTATTTGGAAACGCTGCTACTCGATGCAAGAGTAGCCAATGTTCCATCTGATATTGTTTATCTCCAGAAATTGTTGCACTTTCGTCTTCGAGATGTGACAAATCTGCCTGACAACATTGGCCACATGGTATCTCTATGCACACTAGAGTCCTTCGACCTCAGCAATAATTCTGAAGAAAATGTGTGGGGTCTTGGGGAGATGACGAACTCTATCTCCCTCTTCTGCAGCCACGAGCATATACATGGACTGCTCGAACGATGTGTCATCTCCACCCCTCTCTGTTCAGAGACTTGAGTTGTTACCTCCCATTTGCATCTTTTCCAGACTGCCCGAATGGATCGGGCAGTTAA] [-] EMBL CF197046 [ACNNNNNNGAGTNNNANTACNNNNNTTTTGGGGTCATCAAGAGGAGTATGANNNAAGAGAAATTTCCAGATTGTGTCAACTGAGATACGTGCAGGTTACAACTGATATGATTGTTCAGCTACCAGCCAAAATTCGGGGCCTACAGTATTTGGAAACGCTGCTACTCGATGCAAGAGTAGCCAATGTTCCATCTGATATTGTTTATCTCCAGAAATTGTTGCACTTTCGTCTTCGAGATGTGACAAATCTGCCTGACAACATTGGCCACATGGTATCTCTATGCACACTAGAGTCCTTCGACCTCAGCAATAATTCTGAAGAAAATGTGTGGGGTCTTGGGGAGATGACGAACTCTATCTCCCTCTTCTGCAGCCACGAGCATATACATGGACTGCTCGAACGATGTGTCATCTCCACCCCTCTCTGTTCAGAGACTTGAGTTGTTACCTCCCATTTGCATCTTTTCCAGACTGCCCGAATGGATCGGGCAGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3014#0 CTCGGTCACTCAACTTCTATGGACTAGCTGAGTGTCTGCCTTCGACTTTGCAGTTCAAGC 60 consensus_3014#1 ----------------------------------------------------------AC 2 * consensus_3014#0 AACTTAGAGTTCTAATACTTGAATTTTGGGATGATCAAGAGGAGTTTGATCTCAGAGGAA 120 consensus_3014#1 NNNNNNGAGTNNNANTACNNNNNTTTTGGGGTCATCAAGAGGAGTATGANNNAAGAGAAA 62 **** * *** ******* * ************ *** **** ** consensus_3014#0 TTTTCAGATTGTTACAACTGAGATACGTGCAGGTTACAACTGATATGATCGTTAAGCTAC 180 consensus_3014#1 TTTCCAGATTGTGTCAACTGAGATACGTGCAGGTTACAACTGATATGATTGTTCAGCTAC 122 *** ******** *********************************** *** ****** consensus_3014#0 CAGCCACCGTACAGAGCCTACAATATTTGGAAACACTGCAACTAAATGCAAGAGTAGCGA 240 consensus_3014#1 CAGCCAAAATTCGGGGCCTACAGTATTTGGAAACGCTGCTACTCGATGCAAGAGTAGCCA 182 ****** * * * ******* *********** **** *** ************* * consensus_3014#0 ATGTTCCATCGGATATTGTTCATCTCCCGAAATTATTGCACTTACGTCTTCGAGATGTGG 300 consensus_3014#1 ATGTTCCATCTGATATTGTTTATCTCCAGAAATTGTTGCACTTTCGTCTTCGAGATGTGA 242 ********** ********* ****** ****** ******** *************** consensus_3014#0 CAAATCTGCCTGACAACATTGGCTGCATGGCATCTCTATGCACGCTAGAGTCATTAGACC 360 consensus_3014#1 CAAATCTGCCTGACAACATTGGCCACATGGTATCTCTATGCACACTAGAGTCCTTCGACC 302 *********************** ***** ************ ******** ** **** consensus_3014#0 TCAGCAATAACTCTGAACAAAATGTGTGGGGTCTTGGAGAGATGACGAACCTGCAAGAAC 420 consensus_3014#1 TCAGCAATAATTCTGAAGAAAATGTGTGGGGTCTTGGGGAGATGACGA----------AC 352 ********** ****** ******************* ********** ** consensus_3014#0 TTTATCTCAACTGCTCTACAGAATTGTCTGGCCGCCTGAAGAGAAATCTTACCGCTCTAG 480 consensus_3014#1 TCTATCTC---------------------------------------------------- 360 * ****** consensus_3014#0 CTTCTTCTCTAGGGAAACTTCGTAAACTAAGAACTCTTATTCTGGCTCCTTCTTCAGGCA 540 consensus_3014#1 ---------------------------------------------CCTCTTCTGCAGCCA 375 * ***** *** ** consensus_3014#0 CGAGCATGTACATGGATTGCTCGAGCATCGTTTCATCTCCGCCCCTCTGTCTTCAGAGAC 600 consensus_3014#1 CGAGCATATACATGGACTGCTCGAACGATGTGTCATCTCCACCCCTCTCTGTTCAGAGAC 435 ******* ******** ******* * ** ******** ******* * ********* consensus_3014#0 TTGAGTTATTACCTACCATTTGCATCTTTTCCAGACTGCCCAAATGGATCGGACAGTTAA 660 consensus_3014#1 TTGAGTTGTTACCTCCCATTTGCATCTTTTCCAGACTGCCCGAATGGATCGGGCAGTTAA 495 ******* ****** ************************** ********** ******* consensus_3014#0 AGAGACTCCGCATTCTGAAAATTGTTGTTAGAGAACTGCTATGCAGTGATGTTCATAGCC 720 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 TCACAATGTTACAGGAGCTCACTGTTCTCTCATTGGATGTCCAGCAATCCACTGAAGAAA 780 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 CAATTGTCTTTAACGACAAGGCATTCCCAGTTCTCAAGTATTTCAAATTCAGATGTGGTG 840 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 TGCTGCGTCTTGCTTTTCAGGCGGAGGCAATGCCAAATCTCCGGAAGCTCAAGATAGAAT 900 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 TCAATGTCCACAGGGGGGAACAGTATGGTGATATTCTTACCGGCATTGAACACCTGTTGA 960 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 ACCTTCAAGAGATCATTGGACAAATTGGAGCTGCTGCGGGTGCAGAGGAATCTGACAAGA 1020 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 GAGCCGCTGAGTTTGCGTTAAGTGATGCCACTAAGAAGCATTCGAGGATTTCTAGATTCA 1080 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 ACATACGATGGATTAATTGTGTTGAAGAAGATGTCAGGGTTTCCAAGATTTCAGATTTAC 1140 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 AAGGAATATCTTCAAGTTCAGATGAAGAAAAGCAAAAGGCTAATGAGCCAAGTGGGACAG 1200 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 ATATTACGATTGAGGACGAGTCGCCATTTTCTCACGAGCCAAATTATGATGTTCCACGGG 1260 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 CATACAAGGCAGAGATAGAAAGCGAAGAAGTTCCTCACGCGGAATTAGCAGATGCCTCTC 1320 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 GCACAAGCGATTCAATCGACAATCGTCGACGGCAACGCCGGTCAATCGAGCCTTCTTTCT 1380 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 CCCGCGATCGCCTCAGCCAGCCGAGGAAGCACTCGGTCGCGTCCGCCGTGCCAAAGTTCG 1440 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 GCGAGTGGGACTCGCCGCTCCGCCCGGCAGACAACTACACAAGCATCTTTAACAGGGCGA 1500 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 GGGAAGAAAAGCGTAGTCAGGTAGAGAAGCCGTCGGTGTTTGACAAGGATGACCTACTGG 1560 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 TTAGAAGAACCAGAAATCGCAACGACGGCCACGCCTCCACGAAATGCTCCTGCTTTGGAT 1620 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 GGTGCAAATAGAGATGCATCGACGTTAAAGGCTGTGTTTAATAAGAGAGGAATAGAAAAG 1680 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 ATTGAGGCATTTAGTCAGGCTGTTAATTATCAATTTTGGGCATCAGCGGCACCATATCCG 1740 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 CCCATGGTGAGGCGAACCAGGCAGCGGCGGCGGCTGGCTGGGAATGGCTGCGACGTGCGA 1800 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 GGAGAGGAGGTGTTGGTCTGGCAGCGGGATATATACGGCACGCCCAGCCTCCTAGGCGTC 1860 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 GGATTTGAAGGAAGGCGAGATAAGGGAAGACGGGCGACGGCGCGCGGCATGCGGCGTCTG 1920 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 CTCGTCATCTCTGTTCTCCAGCTCCGCCGCGCGCGAAGACCTCCTTGCAGGTACCTCCCT 1980 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 ATGGTGGTCAGCGTCCACCACAACCAAACCAGCCATTGATGGGGATGGAGGGGGACGCGG 2040 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 ACGGACGGACGGACGGAGGAGGCTGGCGCCATCGCGGCGACCACAGGCTCCGAGGATGGG 2100 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 ACGAGCTCCTGCGGCTGCGGCAACAGGAGAGCCGACGCCTGTAGATATTTTGTTTTCTTT 2160 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 TTCTTTTCTCTCTCTCTCTCTCTCTCGCATTTTGCAGCATGAGCCTGCTTCACCATACCC 2220 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 AATTTTTTTATACGTGATTCACTGTATCATTGGATACACATATCACATGTATCAAATTGC 2280 consensus_3014#1 ------------------------------------------------------------ consensus_3014#0 AATCCAGTGGAGTAAAAAAAAATTACTATTGATTTTATTGTCCAAGTAAATAGAACA 2337 consensus_3014#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||