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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2337 fasta sequence
[CTCGGTCACTCAACTTCTATGGACTAGCTGAGTGTCTGCCTTCGACTTTGCAGTTCAAGCAACTTAGAGTTCTAATACTTGAATTTTGGGATGATCAAGAGGAGTTTGATCTCAGAGGAATTTTCAGATTGTTACAACTGAGATACGTGCAGGTTACAACTGATATGATCGTTAAGCTACCAGCCACCGTACAGAGCCTACAATATTTGGAAACACTGCAACTAAATGCAAGAGTAGCGAATGTTCCATCGGATATTGTTCATCTCCCGAAATTATTGCACTTACGTCTTCGAGATGTGGCAAATCTGCCTGACAACATTGGCTGCATGGCATCTCTATGCACGCTAGAGTCATTAGACCTCAGCAATAACTCTGAACAAAATGTGTGGGGTCTTGGAGAGATGACGAACCTGCAAGAACTTTATCTCAACTGCTCTACAGAATTGTCTGGCCGCCTGAAGAGAAATCTTACCGCTCTAGCTTCTTCTCTAGGGAAACTTCGTAAACTAAGAACTCTTATTCTGGCTCCTTCTTCAGGCACGAGCATGTACATGGATTGCTCGAGCATCGTTTCATCTCCGCCCCTCTGTCTTCAGAGACTTGAGTTATTACCTACCATTTGCATCTTTTCCAGACTGCCCAAATGGATCGGACAGTTAAAGAGACTCCGCATTCTGAAAATTGTTGTTAGAGAACTGCTATGCAGTGATGTTCATAGCCTCACAATGTTACAGGAGCTCACTGTTCTCTCATTGGATGTCCAGCAATCCACTGAAGAAACAATTGTCTTTAACGACAAGGCATTCCCAGTTCTCAAGTATTTCAAATTCAGATGTGGTGTGCTGCGTCTTGCTTTTCAGGCGGAGGCAATGCCAAATCTCCGGAAGCTCAAGATAGAATTCAATGTCCACAGGGGGGAACAGTATGGTGATATTCTTACCGGCATTGAACACCTGTTGAACCTTCAAGAGATCATTGGACAAATTGGAGCTGCTGCGGGTGCAGAGGAATCTGACAAGAGAGCCGCTGAGTTTGCGTTAAGTGATGCCACTAAGAAGCATTCGAGGATTTCTAGATTCAACATACGATGGATTAATTGTGTTGAAGAAGATGTCAGGGTTTCCAAGATTTCAGATTTACAAGGAATATCTTCAAGTTCAGATGAAGAAAAGCAAAAGGCTAATGAGCCAAGTGGGACAGATATTACGATTGAGGACGAGTCGCCATTTTCTCACGAGCCAAATTATGATGTTCCACGGGCATACAAGGCAGAGATAGAAAGCGAAGAAGTTCCTCACGCGGAATTAGCAGATGCCTCTCGCACAAGCGATTCAATCGACAATCGTCGACGGCAACGCCGGTCAATCGAGCCTTCTTTCTCCCGCGATCGCCTCAGCCAGCCGAGGAAGCACTCGGTCGCGTCCGCCGTGCCAAAGTTCGGCGAGTGGGACTCGCCGCTCCGCCCGGCAGACAACTACACAAGCATCTTTAACAGGGCGAGGGAAGAAAAGCGTAGTCAGGTAGAGAAGCCGTCGGTGTTTGACAAGGATGACCTACTGGTTAGAAGAACCAGAAATCGCAACGACGGCCACGCCTCCACGAAATGCTCCTGCTTTGGATGGTGCAAATAGAGATGCATCGACGTTAAAGGCTGTGTTTAATAAGAGAGGAATAGAAAAGATTGAGGCATTTAGTCAGGCTGTTAATTATCAATTTTGGGCATCAGCGGCACCATATCCGCCCATGGTGAGGCGAACCAGGCAGCGGCGGCGGCTGGCTGGGAATGGCTGCGACGTGCGAGGAGAGGAGGTGTTGGTCTGGCAGCGGGATATATACGGCACGCCCAGCCTCCTAGGCGTCGGATTTGAAGGAAGGCGAGATAAGGGAAGACGGGCGACGGCGCGCGGCATGCGGCGTCTGCTCGTCATCTCTGTTCTCCAGCTCCGCCGCGCGCGAAGACCTCCTTGCAGGTACCTCCCTATGGTGGTCAGCGTCCACCACAACCAAACCAGCCATTGATGGGGATGGAGGGGGACGCGGACGGACGGACGGACGGAGGAGGCTGGCGCCATCGCGGCGACCACAGGCTCCGAGGATGGGACGAGCTCCTGCGGCTGCGGCAACAGGAGAGCCGACGCCTGTAGATATTTTGTTTTCTTTTTCTTTTCTCTCTCTCTCTCTCTCTCGCATTTTGCAGCATGAGCCTGCTTCACCATACCCAATTTTTTTATACGTGATTCACTGTATCATTGGATACACATATCACATGTATCAAATTGCAATCCAGTGGAGTAAAAAAAAATTACTATTGATTTTATTGTCCAAGTAAATAGAACA]
[+] EMBL AK109807 [CTCGGTCACTCAACTTCTATGGACTAGCTGAGTGTCTGCCTTCGACTTTGCAGTTCAAGCAACTTAGAGTTCTAATACTTGAATTTTGGGATGATCAAGAGGAGTTTGATCTCAGAGGAATTTTCAGATTGTTACAACTGAGATACGTGCAGGTTACAACTGATATGATCGTTAAGCTACCAGCCACCGTACAGAGCCTACAATATTTGGAAACACTGCAACTAAATGCAAGAGTAGCGAATGTTCCATCGGATATTGTTCATCTCCCGAAATTATTGCACTTACGTCTTCGAGATGTGGCAAATCTGCCTGACAACATTGGCTGCATGGCATCTCTATGCACGCTAGAGTCATTAGACCTCAGCAATAACTCTGAACAAAATGTGTGGGGTCTTGGAGAGATGACGAACCTGCAAGAACTTTATCTCAACTGCTCTACAGAATTGTCTGGCCGCCTGAAGAGAAATCTTACCGCTCTAGCTTCTTCTCTAGGGAAACTTCGTAAACTAAGAACTCTTATTCTGGCTCCTTCTTCAGGCACGAGCATGTACATGGATTGCTCGAGCATCGTTTCATCTCCGCCCCTCTGTCTTCAGAGACTTGAGTTATTACCTACCATTTGCATCTTTTCCAGACTGCCCAAATGGATCGGACAGTTAAAGAGACTCCGCATTCTGAAAATTGTTGTTAGAGAACTGCTATGCAGTGATGTTCATAGCCTCACAATGTTACAGGAGCTCACTGTTCTCTCATTGGATGTCCAGCAATCCACTGAAGAAACAATTGTCTTTAACGACAAGGCATTCCCAGTTCTCAAGTATTTCAAATTCAGATGTGGTGTGCTGCGTCTTGCTTTTCAGGCGGAGGCAATGCCAAATCTCCGGAAGCTCAAGATAGAATTCAATGTCCACAGGGGGGAACAGTATGGTGATATTCTTACCGGCATTGAACACCTGTTGAACCTTCAAGAGATCATTGGACAAATTGGAGCTGCTGCGGGTGCAGAGGAATCTGACAAGAGAGCCGCTGAGTTTGCGTTAAGTGATGCCACTAAGAAGCATTCGAGGATTTCTAGATTCAACATACGATGGATTAATTGTGTTGAAGAAGATGTCAGGGTTTCCAAGATTTCAGATTTACAAGGAATATCTTCAAGTTCAGATGAAGAAAAGCAAAAGGCTAATGAGCCAAGTGGGACAGATATTACGATTGAGGACGAGTCGCCATTTTCTCACGAGCCAAATTATGATGTTCCACGGGCATACAAGGCAGAGATAGAAAGCGAAGAAGTTCCTCACGCGGAATTAGCAGATGCCTCTCGCACAAGCGATTCAATCGACAATCGTCGACGGCAACGCCGGTCAATCGAGCCTTCTTTCTCCCGCGATCGCCTCAGCCAGCCGAGGAAGCACTCGGTCGCGTCCGCCGTGCCAAAGTTCGGCGAGTGGGACTCGCCGCTCCGCCCGGCAGACAACTACACAAGCATCTTTAACAGGGCGAGGGAAGAAAAGCGTAGTCAGGTAGAGAAGCCGTCGGTGTTTGACAAGGATGACCTACTGGTTAGAAGAACCAGAAATCGCAACGACGGCCACGCCTCCACGAAATGCTCCTGCTTTGGATGGTGCAAATAGAGATGCATCGACGTTAAAGGCTGTGTTTAATAAGAGAGGAATAGAAAAGATTGAGGCATTTAGTCAGGCTGTTAATTATCAATTTTGGGCATCAGCGGCACCATATCCGCCCATGGTGAGGCGAACCAGGCAGCGGCGGCGGCTGGCTGGGAATGGCTGCGACGTGCGAGGAGAGGAGGTGTTGGTCTGGCAGCGGGATATATACGGCACGCCCAGCCTCCTAGGCGTCGGATTTGAAGGAAGGCGAGATAAGGGAAGACGGGCGACGGCGCGCGGCATGCGGCGTCTGCTCGTCATCTCTGTTCTCCAGCTCCGCCGCGCGCGAAGACCTCCTTGCAGGTACCTCCCTATGGTGGTCAGCGTCCACCACAACCAAACCAGCCATTGATGGGGATGGAGGGGGACGCGGACGGACGGACGGACGGAGGAGGCTGGCGCCATCGCGGCGACCACAGGCTCCGAGGATGGGACGAGCTCCTGCGGCTGCGGCAACAGGAGAGCCGACGCCTGTAGATATTTTGTTTTCTTTTTCTTTTCTCTCTCTCTCTCTCTCTCGCATTTTGCAGCATGAGCCTGCTTCACCATACCCAATTTTTTTATACGTGATTCACTGTATCATTGGATACACATATCACATGTATCAAATTGCAATCCAGTGGAGTAAAAAAAAATTACTATTGATTTTATTGTCCAAGTAAATAGAACA]
consensusID : consensus_3014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[ACNNNNNNGAGTNNNANTACNNNNNTTTTGGGGTCATCAAGAGGAGTATGANNNAAGAGAAATTTCCAGATTGTGTCAACTGAGATACGTGCAGGTTACAACTGATATGATTGTTCAGCTACCAGCCAAAATTCGGGGCCTACAGTATTTGGAAACGCTGCTACTCGATGCAAGAGTAGCCAATGTTCCATCTGATATTGTTTATCTCCAGAAATTGTTGCACTTTCGTCTTCGAGATGTGACAAATCTGCCTGACAACATTGGCCACATGGTATCTCTATGCACACTAGAGTCCTTCGACCTCAGCAATAATTCTGAAGAAAATGTGTGGGGTCTTGGGGAGATGACGAACTCTATCTCCCTCTTCTGCAGCCACGAGCATATACATGGACTGCTCGAACGATGTGTCATCTCCACCCCTCTCTGTTCAGAGACTTGAGTTGTTACCTCCCATTTGCATCTTTTCCAGACTGCCCGAATGGATCGGGCAGTTAA]
[-] EMBL CF197046 [ACNNNNNNGAGTNNNANTACNNNNNTTTTGGGGTCATCAAGAGGAGTATGANNNAAGAGAAATTTCCAGATTGTGTCAACTGAGATACGTGCAGGTTACAACTGATATGATTGTTCAGCTACCAGCCAAAATTCGGGGCCTACAGTATTTGGAAACGCTGCTACTCGATGCAAGAGTAGCCAATGTTCCATCTGATATTGTTTATCTCCAGAAATTGTTGCACTTTCGTCTTCGAGATGTGACAAATCTGCCTGACAACATTGGCCACATGGTATCTCTATGCACACTAGAGTCCTTCGACCTCAGCAATAATTCTGAAGAAAATGTGTGGGGTCTTGGGGAGATGACGAACTCTATCTCCCTCTTCTGCAGCCACGAGCATATACATGGACTGCTCGAACGATGTGTCATCTCCACCCCTCTCTGTTCAGAGACTTGAGTTGTTACCTCCCATTTGCATCTTTTCCAGACTGCCCGAATGGATCGGGCAGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3014#0 CTCGGTCACTCAACTTCTATGGACTAGCTGAGTGTCTGCCTTCGACTTTGCAGTTCAAGC 60
consensus_3014#1 ----------------------------------------------------------AC 2
*
consensus_3014#0 AACTTAGAGTTCTAATACTTGAATTTTGGGATGATCAAGAGGAGTTTGATCTCAGAGGAA 120
consensus_3014#1 NNNNNNGAGTNNNANTACNNNNNTTTTGGGGTCATCAAGAGGAGTATGANNNAAGAGAAA 62
**** * *** ******* * ************ *** **** **
consensus_3014#0 TTTTCAGATTGTTACAACTGAGATACGTGCAGGTTACAACTGATATGATCGTTAAGCTAC 180
consensus_3014#1 TTTCCAGATTGTGTCAACTGAGATACGTGCAGGTTACAACTGATATGATTGTTCAGCTAC 122
*** ******** *********************************** *** ******
consensus_3014#0 CAGCCACCGTACAGAGCCTACAATATTTGGAAACACTGCAACTAAATGCAAGAGTAGCGA 240
consensus_3014#1 CAGCCAAAATTCGGGGCCTACAGTATTTGGAAACGCTGCTACTCGATGCAAGAGTAGCCA 182
****** * * * ******* *********** **** *** ************* *
consensus_3014#0 ATGTTCCATCGGATATTGTTCATCTCCCGAAATTATTGCACTTACGTCTTCGAGATGTGG 300
consensus_3014#1 ATGTTCCATCTGATATTGTTTATCTCCAGAAATTGTTGCACTTTCGTCTTCGAGATGTGA 242
********** ********* ****** ****** ******** ***************
consensus_3014#0 CAAATCTGCCTGACAACATTGGCTGCATGGCATCTCTATGCACGCTAGAGTCATTAGACC 360
consensus_3014#1 CAAATCTGCCTGACAACATTGGCCACATGGTATCTCTATGCACACTAGAGTCCTTCGACC 302
*********************** ***** ************ ******** ** ****
consensus_3014#0 TCAGCAATAACTCTGAACAAAATGTGTGGGGTCTTGGAGAGATGACGAACCTGCAAGAAC 420
consensus_3014#1 TCAGCAATAATTCTGAAGAAAATGTGTGGGGTCTTGGGGAGATGACGA----------AC 352
********** ****** ******************* ********** **
consensus_3014#0 TTTATCTCAACTGCTCTACAGAATTGTCTGGCCGCCTGAAGAGAAATCTTACCGCTCTAG 480
consensus_3014#1 TCTATCTC---------------------------------------------------- 360
* ******
consensus_3014#0 CTTCTTCTCTAGGGAAACTTCGTAAACTAAGAACTCTTATTCTGGCTCCTTCTTCAGGCA 540
consensus_3014#1 ---------------------------------------------CCTCTTCTGCAGCCA 375
* ***** *** **
consensus_3014#0 CGAGCATGTACATGGATTGCTCGAGCATCGTTTCATCTCCGCCCCTCTGTCTTCAGAGAC 600
consensus_3014#1 CGAGCATATACATGGACTGCTCGAACGATGTGTCATCTCCACCCCTCTCTGTTCAGAGAC 435
******* ******** ******* * ** ******** ******* * *********
consensus_3014#0 TTGAGTTATTACCTACCATTTGCATCTTTTCCAGACTGCCCAAATGGATCGGACAGTTAA 660
consensus_3014#1 TTGAGTTGTTACCTCCCATTTGCATCTTTTCCAGACTGCCCGAATGGATCGGGCAGTTAA 495
******* ****** ************************** ********** *******
consensus_3014#0 AGAGACTCCGCATTCTGAAAATTGTTGTTAGAGAACTGCTATGCAGTGATGTTCATAGCC 720
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 TCACAATGTTACAGGAGCTCACTGTTCTCTCATTGGATGTCCAGCAATCCACTGAAGAAA 780
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 CAATTGTCTTTAACGACAAGGCATTCCCAGTTCTCAAGTATTTCAAATTCAGATGTGGTG 840
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 TGCTGCGTCTTGCTTTTCAGGCGGAGGCAATGCCAAATCTCCGGAAGCTCAAGATAGAAT 900
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 TCAATGTCCACAGGGGGGAACAGTATGGTGATATTCTTACCGGCATTGAACACCTGTTGA 960
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 ACCTTCAAGAGATCATTGGACAAATTGGAGCTGCTGCGGGTGCAGAGGAATCTGACAAGA 1020
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 GAGCCGCTGAGTTTGCGTTAAGTGATGCCACTAAGAAGCATTCGAGGATTTCTAGATTCA 1080
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 ACATACGATGGATTAATTGTGTTGAAGAAGATGTCAGGGTTTCCAAGATTTCAGATTTAC 1140
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 AAGGAATATCTTCAAGTTCAGATGAAGAAAAGCAAAAGGCTAATGAGCCAAGTGGGACAG 1200
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 ATATTACGATTGAGGACGAGTCGCCATTTTCTCACGAGCCAAATTATGATGTTCCACGGG 1260
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 CATACAAGGCAGAGATAGAAAGCGAAGAAGTTCCTCACGCGGAATTAGCAGATGCCTCTC 1320
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 GCACAAGCGATTCAATCGACAATCGTCGACGGCAACGCCGGTCAATCGAGCCTTCTTTCT 1380
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 CCCGCGATCGCCTCAGCCAGCCGAGGAAGCACTCGGTCGCGTCCGCCGTGCCAAAGTTCG 1440
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 GCGAGTGGGACTCGCCGCTCCGCCCGGCAGACAACTACACAAGCATCTTTAACAGGGCGA 1500
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 GGGAAGAAAAGCGTAGTCAGGTAGAGAAGCCGTCGGTGTTTGACAAGGATGACCTACTGG 1560
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 TTAGAAGAACCAGAAATCGCAACGACGGCCACGCCTCCACGAAATGCTCCTGCTTTGGAT 1620
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 GGTGCAAATAGAGATGCATCGACGTTAAAGGCTGTGTTTAATAAGAGAGGAATAGAAAAG 1680
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 ATTGAGGCATTTAGTCAGGCTGTTAATTATCAATTTTGGGCATCAGCGGCACCATATCCG 1740
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 CCCATGGTGAGGCGAACCAGGCAGCGGCGGCGGCTGGCTGGGAATGGCTGCGACGTGCGA 1800
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 GGAGAGGAGGTGTTGGTCTGGCAGCGGGATATATACGGCACGCCCAGCCTCCTAGGCGTC 1860
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 GGATTTGAAGGAAGGCGAGATAAGGGAAGACGGGCGACGGCGCGCGGCATGCGGCGTCTG 1920
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 CTCGTCATCTCTGTTCTCCAGCTCCGCCGCGCGCGAAGACCTCCTTGCAGGTACCTCCCT 1980
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 ATGGTGGTCAGCGTCCACCACAACCAAACCAGCCATTGATGGGGATGGAGGGGGACGCGG 2040
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 ACGGACGGACGGACGGAGGAGGCTGGCGCCATCGCGGCGACCACAGGCTCCGAGGATGGG 2100
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 ACGAGCTCCTGCGGCTGCGGCAACAGGAGAGCCGACGCCTGTAGATATTTTGTTTTCTTT 2160
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 TTCTTTTCTCTCTCTCTCTCTCTCTCGCATTTTGCAGCATGAGCCTGCTTCACCATACCC 2220
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 AATTTTTTTATACGTGATTCACTGTATCATTGGATACACATATCACATGTATCAAATTGC 2280
consensus_3014#1 ------------------------------------------------------------
consensus_3014#0 AATCCAGTGGAGTAAAAAAAAATTACTATTGATTTTATTGTCCAAGTAAATAGAACA 2337
consensus_3014#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||