cluster # 3017

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Oryza sativa
cluster # 3017 cluster # 3017 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3017#0 length = 1572 sequences # 1

consensus_3017#1 length = 505 sequences # 1

consensusID : consensus_3017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1572
fasta sequence

                              [GGGGATCGCAAATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGGTGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCGCCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGGTTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTGCACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAAAAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGGAGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTAGTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTAGTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTTGTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGCTGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCATGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGAAAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGTACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTCCCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAAGTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACTCATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATGCTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTGGTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACATATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAGTAATTTATTTTCCAAACTGGCCGCTGTAGTTATTTCCATGTATGATATACATTTTTGCGTGATGGAAAATTTAGCCAGATGACACATTGACTGACAGTTCATGCAGATTGTCAAACTGGATATTGAATAGA]

[+] EMBL AK066382             [GGGGATCGCAAATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGGTGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCGCCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGGTTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTGCACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAAAAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGGAGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTAGTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTAGTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTTGTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGCTGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCATGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGAAAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGTACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTCCCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAAGTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACTCATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATGCTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTGGTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACATATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAGTAATTTATTTTCCAAACTGGCCGCTGTAGTTATTTCCATGTATGATATACATTTTTGCGTGATGGAAAATTTAGCCAGATGACACATTGACTGACAGTTCATGCAGATTGTCAAACTGGATATTGAATAGA]




>consensus_3017#0
GGGGATCGCAAATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGG
TGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCG
CCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGG
TTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTG
CACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAA
AAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGG
AGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTA
GTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTA
GTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTT
GTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGC
TGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCA
TGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGA
AAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGT
ACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTC
CCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAA
GTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACT
CATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATG
CTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTG
GTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACA
TATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGT
TTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAA
AATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGA
TTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGT
AGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGA
GTAATTTATTTTCCAAACTGGCCGCTGTAGTTATTTCCATGTATGATATACATTTTTGCG
TGATGGAAAATTTAGCCAGATGACACATTGACTGACAGTTCATGCAGATTGTCAAACTGG
ATATTGAATAGA

consensusID : consensus_3017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [CCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAATTGAAGCGAATCATCTTAGGGGTACATGAAACAGGCCTACATCAACTATGAATCAGCTTCGCAATGGAAAAGTTCCCCAATATCTTTCGCCAGCTATAACTGTAGTACCAGAACTCTCTGAAGTTACATTTCCTAGTTTTTCAGAGCATAGANNATCCTATATCGAAAGGGAGCAGTGTNGTNNNTCTATCAACTCATTTGATGCTTCTACTCNNNTG]

[+] EMBL CF197100             [CCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAATTGAAGCGAATCATCTTAGGGGTACATGAAACAGGCCTACATCAACTATGAATCAGCTTCGCAATGGAAAAGTTCCCCAATATCTTTCGCCAGCTATAACTGTAGTACCAGAACTCTCTGAAGTTACATTTCCTAGTTTTTCAGAGCATAGANNATCCTATATCGAAAGGGAGCAGTGTNGTNNNTCTATCAACTCATTTGATGCTTCTACTCNNNTG]




>consensus_3017#1
CCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTT
GTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGA
GGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTAC
ACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTAGCCATGGGCCACA
GTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAATTGAAGCGAATCA
TCTTAGGGGTACATGAAACAGGCCTACATCAACTATGAATCAGCTTCGCAATGGAAAAGT
TCCCCAATATCTTTCGCCAGCTATAACTGTAGTACCAGAACTCTCTGAAGTTACATTTCC
TAGTTTTTCAGAGCATAGANNATCCTATATCGAAAGGGAGCAGTGTNGTNNNTCTATCAA
CTCATTTGATGCTTCTACTCNNNTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3017#0      GGGGATCGCAAATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGG 60
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      TGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCG 120
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      CCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGG 180
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      TTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTG 240
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      CACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAA 300
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      AAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGG 360
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      AGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTA 420
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      GTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTA 480
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      GTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTT 540
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      GTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGC 600
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      TGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCA 660
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      TGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGA 720
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      AAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGT 780
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      ACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTC 840
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      CCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAA 900
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      GTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACT 960
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      CATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATG 1020
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      CTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTG 1080
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      GTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACA 1140
consensus_3017#1      ------------------------------------------------------------
                                                                                  

consensus_3017#0      TATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGT 1200
consensus_3017#1      --------------CCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGT 46
                                    **********************************************

consensus_3017#0      TTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAA 1260
consensus_3017#1      TTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAA 106
                      ************************************************************

consensus_3017#0      AATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGA 1320
consensus_3017#1      AATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGA 166
                      ************************************************************

consensus_3017#0      TTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGT 1380
consensus_3017#1      TTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGT 226
                      ************************************************************

consensus_3017#0      AGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGA 1440
consensus_3017#1      AGCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGA 286
                      ************************************************************

consensus_3017#0      GT---AATTTATTTTCCAAACTGGCCGCTGTAGTTATTTCCATGTATGATATACATTTTT 1497
consensus_3017#1      ATTGAAGCGAATCATCTTAGGGGTACATGAAACAGGCCTACATCAACTATGAATCAGCTT 346
                       *   *    **  **  *   *  *     *      * ***  *  **  *     **

consensus_3017#0      GCGTGATGGAAAATTTAGCCAG-ATGACACATTGACTG--ACAGTTCATGCAGA-TTGTC 1553
consensus_3017#1      -CGCAATGGAAAAGTTCCCCAATATCTTTCGCCAGCTATAACTGTAGTACCAGAACTCTC 405
                       **  ******** **  ***  **    *     **   ** **     ****  * **

consensus_3017#0      AAACTGGATATTGAATAGA----------------------------------------- 1572
consensus_3017#1      TGAAGTTACATTTCCTAGTTTTTCAGAGCATAGANNATCCTATATCGAAAGGGAGCAGTG 465
                        *    * ***   ***                                          

consensus_3017#0      ----------------------------------------
consensus_3017#1      TNGTNNNTCTATCAACTCATTTGATGCTTCTACTCNNNTG 505