These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAANNANAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGANAGCCCACGTTGTACGACCTACTCGGGATCTCCTCGGAGGGCACCCTCGACGAGGTCCGCGCGGCCTACAGGCGGATGGCGCGCAAGTACAATCCGGACGTTTGGCGGCCGATGCGGCGCCGAGAAAACCGGCGGTTNAATCGAGTNCAAGAAGGCTTACGAAAAGTTTTTCGAACCAAGCGGCGGGGCAACTAAGAACG] [+] EMBL AU163586 [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAANNANAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGANAGCCCACGTTGTACGACCTACTCGGGATCTCCTCGGAGGGCACCCTCGACGAGGTCCGCGCGGCCTACAGGCGGATGGCGCGCAAGTACAATCCGGACGTTTGGCGGCCGATGCGGCGCCGAGAAAACCGGCGGTTNAATCGAGTNCAAGAAGGCTTACGAAAAGTTTTTCGAACCAAGCGGCGGGGCAACTAAGAACG] consensusID : consensus_3022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAAGCGAAAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAGCAGCCCACGTTGTACGACCTATTCGGGATCTCCTNGGAGGGCACCCTTGACGAGGTCCGCGCGGNCTACAGGCGGATTGGGGCGCAAGTACCATTCCGGACGTTTTTGCCGGCCGAACGCCGCCGNCGAAAAAACCCGCCGGTTTATTGAGGGGCAN] [+] EMBL AU172532 [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAAGCGAAAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAGCAGCCCACGTTGTACGACCTATTCGGGATCTCCTNGGAGGGCACCCTTGACGAGGTCCGCGCGGNCTACAGGCGGATTGGGGCGCAAGTACCATTCCGGACGTTTTTGCCGGCCGAACGCCGCCGNCGAAAAAACCCGCCGGTTTATTGAGGGGCAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3022#0 AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAANN-ANAGTGAAAGCATAGAGAGAA 59 consensus_3022#1 AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAAGCGAAAGTGAAAGCATAGAGAGAA 60 ************************************ * ******************* consensus_3022#0 GAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGC 119 consensus_3022#1 GAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGC 120 ************************************************************ consensus_3022#0 CTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGC 179 consensus_3022#1 CTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGC 180 ************************************************************ consensus_3022#0 GCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAN-AGCCCACGTTGTACGA 238 consensus_3022#1 GCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAGCAGCCCACGTTGTACGA 240 ****************************************** **************** consensus_3022#0 CCTACTCGGGATCTCCTCGGAGGGCACCCTCGACGAGGTCCGCGCGGCCTACAGGCGGAT 298 consensus_3022#1 CCTATTCGGGATCTCCTNGGAGGGCACCCTTGACGAGGTCCGCGCGGNCTACAGGCGGAT 300 **** ************ ************ **************** ************ consensus_3022#0 -GGCGCGCAAGTACAAT-CCGGACGTTT--GGCGGCCGATG--CGGCGCCGAGAAAACCG 352 consensus_3022#1 TGGGGCGCAAGTACCATTCCGGACGTTTTTGCCGGCCGAACGCCGCCGNCGAAAAAACCC 360 ** ********** ** ********** * ******* ** ** *** ****** consensus_3022#0 GCGGTTNAATCGAGTNCAAGAAGGCTTACGAAAAGTTTTTCGAACCAAGCGGCGGGGCAA 412 consensus_3022#1 GCCGGTTTATTGAGGGGCAN---------------------------------------- 380 ** * * ** *** * consensus_3022#0 CTAAGAACG 421 consensus_3022#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||