cluster # 3026

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Oryza sativa
cluster # 3026 cluster # 3026 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3026#0 length = 755 sequences # 1

consensus_3026#1 length = 744 sequences # 1

consensusID : consensus_3026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 755
fasta sequence

                              [AAGGGGGATATAACAAAGATNAAGGAGAAAAGTTTTGATCCTATGGTTGCTTCTGAGCCACTGAAACGGTCTCACAGCCCGCTGACTAACTTCCTAGTTCCTGAACAATTGTGTAAGGAGAAACAGTTTGAAACCGATATAGCAAAGATAAAAGAGAAAAGTTTTGATCATCTAGTTGCTTATGAGCCGCTGAAAAGGTCTCACAGCCCGCTGGCTAACTTCTTAGTTCCTAAACAAATGGCGAAAATTGATACTTATTACAAGAAAGTTTAGATGCATGTTTACCAAGTGAAGATAGAAAACTGATCACTCCCATACATGTTAAGTTAGAAGGAGACACCACTTTGGAAAGTAAAGAAACATTAAAACGTGAAACCAAGGAGGAAACATACACTATGGAATCTTTTGGTAGTTATCAAGTTGAAAGAAAAGTAAATACTTATCAGACTGTGTCAGAAGAAACGCATAATCCAGATATCTCTGCAAAGCCCACTGACGAAATAGTTTCAAAGAACATTATCAAAATAAACAGTGTCAAGGAAAATCAAGGAGTCCTGAGAGCTATATATAATATGCCAATACATTATCATGCAGCAATCCTGTGTTTTATATTAATTGTATATAATCTTATATTTCAGTATATTAAAAAGAACTGTCATGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCAAATATACTAGTCATTGAGTAGCAACAGNTACTGGTGATATGAATTAC]

[+] EMBL CA764970             [AAGGGGGATATAACAAAGATNAAGGAGAAAAGTTTTGATCCTATGGTTGCTTCTGAGCCACTGAAACGGTCTCACAGCCCGCTGACTAACTTCCTAGTTCCTGAACAATTGTGTAAGGAGAAACAGTTTGAAACCGATATAGCAAAGATAAAAGAGAAAAGTTTTGATCATCTAGTTGCTTATGAGCCGCTGAAAAGGTCTCACAGCCCGCTGGCTAACTTCTTAGTTCCTAAACAAATGGCGAAAATTGATACTTATTACAAGAAAGTTTAGATGCATGTTTACCAAGTGAAGATAGAAAACTGATCACTCCCATACATGTTAAGTTAGAAGGAGACACCACTTTGGAAAGTAAAGAAACATTAAAACGTGAAACCAAGGAGGAAACATACACTATGGAATCTTTTGGTAGTTATCAAGTTGAAAGAAAAGTAAATACTTATCAGACTGTGTCAGAAGAAACGCATAATCCAGATATCTCTGCAAAGCCCACTGACGAAATAGTTTCAAAGAACATTATCAAAATAAACAGTGTCAAGGAAAATCAAGGAGTCCTGAGAGCTATATATAATATGCCAATACATTATCATGCAGCAATCCTGTGTTTTATATTAATTGTATATAATCTTATATTTCAGTATATTAAAAAGAACTGTCATGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCAAATATACTAGTCATTGAGTAGCAACAGNTACTGGTGATATGAATTAC]




>consensus_3026#0
AAGGGGGATATAACAAAGATNAAGGAGAAAAGTTTTGATCCTATGGTTGCTTCTGAGCCA
CTGAAACGGTCTCACAGCCCGCTGACTAACTTCCTAGTTCCTGAACAATTGTGTAAGGAG
AAACAGTTTGAAACCGATATAGCAAAGATAAAAGAGAAAAGTTTTGATCATCTAGTTGCT
TATGAGCCGCTGAAAAGGTCTCACAGCCCGCTGGCTAACTTCTTAGTTCCTAAACAAATG
GCGAAAATTGATACTTATTACAAGAAAGTTTAGATGCATGTTTACCAAGTGAAGATAGAA
AACTGATCACTCCCATACATGTTAAGTTAGAAGGAGACACCACTTTGGAAAGTAAAGAAA
CATTAAAACGTGAAACCAAGGAGGAAACATACACTATGGAATCTTTTGGTAGTTATCAAG
TTGAAAGAAAAGTAAATACTTATCAGACTGTGTCAGAAGAAACGCATAATCCAGATATCT
CTGCAAAGCCCACTGACGAAATAGTTTCAAAGAACATTATCAAAATAAACAGTGTCAAGG
AAAATCAAGGAGTCCTGAGAGCTATATATAATATGCCAATACATTATCATGCAGCAATCC
TGTGTTTTATATTAATTGTATATAATCTTATATTTCAGTATATTAAAAAGAACTGTCATG
GTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCAAATATACTAGTC
ATTGAGTAGCAACAGNTACTGGTGATATGAATTAC

consensusID : consensus_3026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 744
fasta sequence

                              [ACGAGACAAAGGGGGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCATATATACTAGTCATTGAGTAGCAACAGTTACTGTTGATATGAATTACTACTTCTCGTTTAAGTGTATTTAAGAATGAAATAGGAAGATGTAAATAATCAATGCATATACGTTATATTCCTCTCTTCTTTAGTGTAACATCAGTAATTATCCTTAACATTTTGGTGCTTTTTACACTAAAAATCAAAACGCTCGCAGTATGTATACAGTTTTGTCTAATTTATATGTAAGGCTTTTGTATACAGCTTACGGAATGTTGCAGTGAACTGTCACTAACATTAACAGCCGTTAAACCTAAATTTAACGAAATCTTAAGTAAAGAAAGAACCTTCCAATAAAAGTAGGCAGTATACATCATTTTACAAATATGATGGTGCACCAACTCTATCAATATTAGAATATAGATTAATGTATTCAAATATTTATCTCGTTATAATATTATTGGAAACATTAATATAGTGCATACGATAATATTAATCATTCTTCAGAGTTATACATACTATAAGCTCGAATAATCCTTACGTATTATTTATTAAGAAATCGCAAGCAAAATAAAATTTTTGTAAACTTTTTTTATTTTTATGTTGATGATAATGGTATTTTTAAGAACTATTTATTTAGAATTACTTATGCAATTAGCATACAACACATAATATTTATGNGTGCTTAAATAAAGTATTTTA]

[+] EMBL CB096613             [ACGAGACAAAGGGGGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTATGCATATATACTAGTCATTGAGTAGCAACAGTTACTGTTGATATGAATTACTACTTCTCGTTTAAGTGTATTTAAGAATGAAATAGGAAGATGTAAATAATCAATGCATATACGTTATATTCCTCTCTTCTTTAGTGTAACATCAGTAATTATCCTTAACATTTTGGTGCTTTTTACACTAAAAATCAAAACGCTCGCAGTATGTATACAGTTTTGTCTAATTTATATGTAAGGCTTTTGTATACAGCTTACGGAATGTTGCAGTGAACTGTCACTAACATTAACAGCCGTTAAACCTAAATTTAACGAAATCTTAAGTAAAGAAAGAACCTTCCAATAAAAGTAGGCAGTATACATCATTTTACAAATATGATGGTGCACCAACTCTATCAATATTAGAATATAGATTAATGTATTCAAATATTTATCTCGTTATAATATTATTGGAAACATTAATATAGTGCATACGATAATATTAATCATTCTTCAGAGTTATACATACTATAAGCTCGAATAATCCTTACGTATTATTTATTAAGAAATCGCAAGCAAAATAAAATTTTTGTAAACTTTTTTTATTTTTATGTTGATGATAATGGTATTTTTAAGAACTATTTATTTAGAATTACTTATGCAATTAGCATACAACACATAATATTTATGNGTGCTTAAATAAAGTATTTTA]




>consensus_3026#1
ACGAGACAAAGGGGGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTAT
GCATATATACTAGTCATTGAGTAGCAACAGTTACTGTTGATATGAATTACTACTTCTCGT
TTAAGTGTATTTAAGAATGAAATAGGAAGATGTAAATAATCAATGCATATACGTTATATT
CCTCTCTTCTTTAGTGTAACATCAGTAATTATCCTTAACATTTTGGTGCTTTTTACACTA
AAAATCAAAACGCTCGCAGTATGTATACAGTTTTGTCTAATTTATATGTAAGGCTTTTGT
ATACAGCTTACGGAATGTTGCAGTGAACTGTCACTAACATTAACAGCCGTTAAACCTAAA
TTTAACGAAATCTTAAGTAAAGAAAGAACCTTCCAATAAAAGTAGGCAGTATACATCATT
TTACAAATATGATGGTGCACCAACTCTATCAATATTAGAATATAGATTAATGTATTCAAA
TATTTATCTCGTTATAATATTATTGGAAACATTAATATAGTGCATACGATAATATTAATC
ATTCTTCAGAGTTATACATACTATAAGCTCGAATAATCCTTACGTATTATTTATTAAGAA
ATCGCAAGCAAAATAAAATTTTTGTAAACTTTTTTTATTTTTATGTTGATGATAATGGTA
TTTTTAAGAACTATTTATTTAGAATTACTTATGCAATTAGCATACAACACATAATATTTA
TGNGTGCTTAAATAAAGTATTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3026#0      ---------AAGGGGGATATAACAAAGATNAAG---GAGAAAAGTTTTGATCCTATGGTT 48
consensus_3026#1      ACGAGACAAAGGGGGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACATGTAT 60
                               * *****  * **  ** ** *      * ****  ** *     ***  *

consensus_3026#0      GCTTCTGAGCCACTGAAACGGTCTCA-CAGC--CCGCTGAC-TAACTTCCTAGTTCCTGA 104
consensus_3026#1      GCATATATACTAGTCATTGAGTAGCAACAGTTACTGTTGATATGAATTACTACTTCTCGT 120
                      ** * *   * * * *    **  ** ***   * * ***  * * ** *** ***  * 

consensus_3026#0      ACAATTGTGTAAGGAGAAACAGTTTGAAACCGATATAGCAAAGATAAAAGAGAAAAGTTT 164
consensus_3026#1      TTAAGTGTATTTAAGAATGAAATAGGAA---GATGTAA-ATAATCAATGCATATACGTTA 176
                        ** *** *      *   * *  ***   *** **  * *   **   * * * *** 

consensus_3026#0      TGATCATCTAGTTGCTTATGAGCCGCTGAAAAGGTCTCACAGCCCGCTGGCTAACTTCTT 224
consensus_3026#1      TATTCCTCTCTTCTTTAGTGTAACATCAGTAATTATCCTTAACATTTTGGT--GCTTTTT 234
                      *  ** ***  *   *  **   *      **     *  * *    ***    *** **

consensus_3026#0      AGTTCCTAAAC--AAATGGCGAAAATTGATACTTATTACAAGAAAGTTTAGATGCATGTT 282
consensus_3026#1      ACACTAAAAATCAAAACGCTCGCAGTATGTATACAGTTTTGTCTAATTTATATGTAAGGC 294
                      *      ***   *** *     * *   **   * *       * **** *** * *  

consensus_3026#0      TACCAAGTGAAGATAGAAAACTGATCACTCCCATACATGTTAAGTTAGAAGGAGACACCA 342
consensus_3026#1      TTT----TGTATACAGCTTACGGAATGTTGCAGTGAACT----GTCACTAACATTAACAG 346
                      *      ** * * **   ** **    * *  *  *      ** *  *  *   **  

consensus_3026#0      CTTTGGAAAGTAAAGAAACATTAAAACGTGAAACCAAGGAGGAAACATACACTATGGAAT 402
consensus_3026#1      CCGTTAAACCTAAAT--TTAACGAAATCTTAAGTAAAGAAAGAACCTTCCA--ATAAAAG 402
                      *  *  **  ****     *   ***  * **   *** * *** * * **  **  ** 

consensus_3026#0      CTTTTGGTAGTTATCAAGTTGAAAGAAAAGTAAATACTTATCAGACTGTGTCAGAAGAAA 462
consensus_3026#1      TAGGCAGTATACATCATTTT---ACAAATATGATGGTGCACCA-ACTCTATCAATATTAG 458
                            ***   ****  **   * ***  * *      * ** *** * ***  *  * 

consensus_3026#0      CGCATAATCCAGATATCTCTGCAAAGCCCACTGACGAAATAGTTTCAAAGAACATTATCA 522
consensus_3026#1      AATATAGATTA-ATGTATTCAAATATTTATCTCGTTATAATATTATTGGAAACATTAATA 517
                         ***    * ** * *    * *     **    * *   **      *******  *

consensus_3026#0      AAATAAACAGTGTCAAGGAAAATCAAGGAGTCCTGAGAGCTATATATAATATGCCAATAC 582
consensus_3026#1      TAGTGCATACGAT-----AATATTAATCATTCTTCAGAGTTATACATACTATAAGCTCGA 572
                       * *  * *   *     ** ** **  * ** * **** **** *** ***        

consensus_3026#0      ATTATCATGCAGCAATCCTGTGTTTTATATTAATTGTATATAATCTTATATTTCAGTATA 642
consensus_3026#1      ATAATCCTTACGTA---TTATTTATTA-AGAAATCGCAAGCAAAATAAAATTTTTGTAAA 628
                      ** *** *   * *    * * * *** *  *** * *   **  * * ****  *** *

consensus_3026#0      TTAAAAAGAACTGT-CATGGTCAAAAGTAAAATTATATTCAATAAAATATTAGTAAACAT 701
consensus_3026#1      CTTTTTTTATTTTTATGTTGATGATAATGGTATTTTTAAGAACTATTTATTTAGAATTAC 688
                       *      *  * *   * *   * * *   *** *    **  *  ****   **  * 

consensus_3026#0      GTATGCAAATATACTAGTCATTGAGTAGCAACAGNTACTGGTGATATGAATTAC---- 755
consensus_3026#1      TTATGCAATTAGCATA--CAACACATAATATTTATGNGTGCTTAAATAAAGTATTTTA 744
                       ******* **   **  **     **  *        ** * * ** ** **