These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [CGTCGTACCGCTCCTGTACCTCGTGCTGCTTCCAGCCGGGAACACGACGAGAAATGGCGCTGCGAGGTGGGAGGACGACGGTGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACGTGGAGTTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCCCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGTCCTCTTGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAAAGCGCGCGCGGCGGCGGCGGCGGCGACAGGGGGCGCGAGCTGAGGAAGGT] [+] EMBL CB621371 [CGTCGTACCGCTCCTGTACCTCGTGCTGCTTCCAGCCGGGAACACGACGAGAAATGGCGCTGCGAGGTGGGAGGACGACGGTGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACGTGGAGTTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCCCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGTCCTCTTGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAAAGCGCGCGCGGCGGCGGCGGCGGCGACAGGGGGCGCGAGCTGAGGAAGGT] consensusID : consensus_3028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [AATCCGTTGTGCACGTACTTACGCGGCCACCAAACGAACACCTGTTGCATGCACGCGCACAAACGGCGGTGTGCAACCATGGCCGTCTCGCTCGTCGTCGTCGTCGTCGTCGTCATCGCCATCGTCGTGCCGCTCCTGTACCTCGTGCTGCTTCCTGCCTGGAAGCCGGCGCGGCGGGACGACGGTGACGGTGGAATGAGGAGGAGGCTTCCGCCGTCGCCGCCGTGGGGGCTCCCGCTGCTCGGACACCTCCACCTGCTCGGCGCCCTGCCGCACCGGGCTCTCCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTCCGTCTCGGGCGCGTCCCCGTGGTGGT] [+] EMBL AU163704 [AATCCGTTGTGCACGTACTTACGCGGCCACCAAACGAACACCTGTTGCATGCACGCGCACAAACGGCGGTGTGCAACCATGGCCGTCTCGCTCGTCGTCGTCGTCGTCGTCGTCATCGCCATCGTCGTGCCGCTCCTGTACCTCGTGCTGCTTCCTGCCTGGAAGCCGGCGCGGCGGGACGACGGTGACGGTGGAATGAGGAGGAGGCTTCCGCCGTCGCCGCCGTGGGGGCTCCCGCTGCTCGGACACCTCCACCTGCTCGGCGCCCTGCCGCACCGGGCTCTCCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTCCGTCTCGGGCGCGTCCCCGTGGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3028#0 CGTCGTACCGCTCCTGTACCTCGTGCTGCTTCCAGCCGGGAACACGACGAGAAATGGCGC 60 consensus_3028#1 ------------------------------------------------------------ consensus_3028#0 TGCGAGGTGGGAGGACGACGGTGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCC 120 consensus_3028#1 ------------------------------------------------------------ consensus_3028#0 GCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACT 180 consensus_3028#1 ---------------AATCCGTTG--TGCACGTACTTA---CGCGGCCACCAAACGAACA 40 ** * * *** * ** *** *** * * ** consensus_3028#0 GCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGT 240 consensus_3028#1 CCTGTTGCATGCACGCGCACAAACGGCGGTG-TGCAACCATGGCCGTCTCGC-TCGTCGT 98 * ** * ** ** ** ***** *** * *** *** * *** consensus_3028#0 GGTGGTCGT-GTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGG-TCGCGGGACGTGGAG 298 consensus_3028#1 CGTCGTCGTCGTCGTCATCG-CCATCGTCGTGCCGCTCCTGTACCTCGTGCTGCTTCCTG 157 ** ***** ****** ** ** * ** * * * ** *** * * * * consensus_3028#0 TTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTC 358 consensus_3028#1 CCTGGAAGCCGGCGCGGCGGGACGACGGTGACGGTGGAATGAGGAGGAGGCTTC-----C 212 * ******* * * * * * ** * ** ** *** * * consensus_3028#0 GCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCCCCGCATCTGCGTGGTCCACCTC 418 consensus_3028#1 GCCGTCGC-CGCCGTGGGGGCTCCCGCTGCTCGGACACCTCCACCTGCTCGGCGCCCTGC 271 ** **** * * ** * * * * ** ** ** ** **** ** * * * consensus_3028#0 CTCAGCGCGCGCCGCGTCCTCTTGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTC 478 consensus_3028#1 CGCACCGGGCTCTCCGGTCCCTCG--CCGCGGCGCACGGCCCGGTGCTGCTGCTCCGTC- 328 * ** ** ** * ** * ** * **** *** ** * * ** ** ** consensus_3028#0 GTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGACCTGTCCGACCTCCTCATCGCT 538 consensus_3028#1 -TCGGGCGCGTCCCCGTGGTGGT------------------------------------- 350 **** ******* ** * * consensus_3028#0 TACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAAAGCGCGCGCGGCGGCGGC 598 consensus_3028#1 ------------------------------------------------------------ consensus_3028#0 GGCGGCGACAGGGGGCGCGAGCTGAGGAAGGT 630 consensus_3028#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||