cluster # 3028

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Oryza sativa
cluster # 3028 cluster # 3028 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3028#0 length = 630 sequences # 1

consensus_3028#1 length = 350 sequences # 1

consensusID : consensus_3028#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CGTCGTACCGCTCCTGTACCTCGTGCTGCTTCCAGCCGGGAACACGACGAGAAATGGCGCTGCGAGGTGGGAGGACGACGGTGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACGTGGAGTTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCCCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGTCCTCTTGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAAAGCGCGCGCGGCGGCGGCGGCGGCGACAGGGGGCGCGAGCTGAGGAAGGT]

[+] EMBL CB621371             [CGTCGTACCGCTCCTGTACCTCGTGCTGCTTCCAGCCGGGAACACGACGAGAAATGGCGCTGCGAGGTGGGAGGACGACGGTGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACGTGGAGTTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCCCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGTCCTCTTGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAAAGCGCGCGCGGCGGCGGCGGCGGCGACAGGGGGCGCGAGCTGAGGAAGGT]




>consensus_3028#0
CGTCGTACCGCTCCTGTACCTCGTGCTGCTTCCAGCCGGGAACACGACGAGAAATGGCGC
TGCGAGGTGGGAGGACGACGGTGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCC
GCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACT
GCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGT
GGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACGTGGAGTT
CGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGC
GTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCCCCGCATCTGCGTGGTCCACCTCCT
CAGCGCGCGCCGCGTCCTCTTGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGT
CGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGACCTGTCCGACCTCCTCATCGCTTA
CTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAAAGCGCGCGCGGCGGCGGCGG
CGGCGACAGGGGGCGCGAGCTGAGGAAGGT

consensusID : consensus_3028#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [AATCCGTTGTGCACGTACTTACGCGGCCACCAAACGAACACCTGTTGCATGCACGCGCACAAACGGCGGTGTGCAACCATGGCCGTCTCGCTCGTCGTCGTCGTCGTCGTCGTCATCGCCATCGTCGTGCCGCTCCTGTACCTCGTGCTGCTTCCTGCCTGGAAGCCGGCGCGGCGGGACGACGGTGACGGTGGAATGAGGAGGAGGCTTCCGCCGTCGCCGCCGTGGGGGCTCCCGCTGCTCGGACACCTCCACCTGCTCGGCGCCCTGCCGCACCGGGCTCTCCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTCCGTCTCGGGCGCGTCCCCGTGGTGGT]

[+] EMBL AU163704             [AATCCGTTGTGCACGTACTTACGCGGCCACCAAACGAACACCTGTTGCATGCACGCGCACAAACGGCGGTGTGCAACCATGGCCGTCTCGCTCGTCGTCGTCGTCGTCGTCGTCATCGCCATCGTCGTGCCGCTCCTGTACCTCGTGCTGCTTCCTGCCTGGAAGCCGGCGCGGCGGGACGACGGTGACGGTGGAATGAGGAGGAGGCTTCCGCCGTCGCCGCCGTGGGGGCTCCCGCTGCTCGGACACCTCCACCTGCTCGGCGCCCTGCCGCACCGGGCTCTCCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTCCGTCTCGGGCGCGTCCCCGTGGTGGT]




>consensus_3028#1
AATCCGTTGTGCACGTACTTACGCGGCCACCAAACGAACACCTGTTGCATGCACGCGCAC
AAACGGCGGTGTGCAACCATGGCCGTCTCGCTCGTCGTCGTCGTCGTCGTCGTCATCGCC
ATCGTCGTGCCGCTCCTGTACCTCGTGCTGCTTCCTGCCTGGAAGCCGGCGCGGCGGGAC
GACGGTGACGGTGGAATGAGGAGGAGGCTTCCGCCGTCGCCGCCGTGGGGGCTCCCGCTG
CTCGGACACCTCCACCTGCTCGGCGCCCTGCCGCACCGGGCTCTCCGGTCCCTCGCCGCG
GCGCACGGCCCGGTGCTGCTGCTCCGTCTCGGGCGCGTCCCCGTGGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3028#0      CGTCGTACCGCTCCTGTACCTCGTGCTGCTTCCAGCCGGGAACACGACGAGAAATGGCGC 60
consensus_3028#1      ------------------------------------------------------------
                                                                                  

consensus_3028#0      TGCGAGGTGGGAGGACGACGGTGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCC 120
consensus_3028#1      ------------------------------------------------------------
                                                                                  

consensus_3028#0      GCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACT 180
consensus_3028#1      ---------------AATCCGTTG--TGCACGTACTTA---CGCGGCCACCAAACGAACA 40
                                       ** *     * *** * **     *** *** *     * ** 

consensus_3028#0      GCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGT 240
consensus_3028#1      CCTGTTGCATGCACGCGCACAAACGGCGGTG-TGCAACCATGGCCGTCTCGC-TCGTCGT 98
                       * **  *  **    ** **     ***** ***  *   ***     *** *   ***

consensus_3028#0      GGTGGTCGT-GTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGG-TCGCGGGACGTGGAG 298
consensus_3028#1      CGTCGTCGTCGTCGTCATCG-CCATCGTCGTGCCGCTCCTGTACCTCGTGCTGCTTCCTG 157
                       ** ***** ******  ** **   * ** *  * *  **    *** *   * *   *

consensus_3028#0      TTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTC 358
consensus_3028#1      CCTGGAAGCCGGCGCGGCGGGACGACGGTGACGGTGGAATGAGGAGGAGGCTTC-----C 212
                         *  ******* * *   * * * **    * **         ** ***  *     *

consensus_3028#0      GCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCCCCGCATCTGCGTGGTCCACCTC 418
consensus_3028#1      GCCGTCGC-CGCCGTGGGGGCTCCCGCTGCTCGGACACCTCCACCTGCTCGGCGCCCTGC 271
                      **  **** * *   ** *  * * *  **  **   **  ** ****  **  * *  *

consensus_3028#0      CTCAGCGCGCGCCGCGTCCTCTTGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTC 478
consensus_3028#1      CGCACCGGGCTCTCCGGTCCCTCG--CCGCGGCGCACGGCCCGGTGCTGCTGCTCCGTC- 328
                      * ** ** ** *  **  * ** *  **** ***   **   *  *  ** **  **   

consensus_3028#0      GTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGACCTGTCCGACCTCCTCATCGCT 538
consensus_3028#1      -TCGGGCGCGTCCCCGTGGTGGT------------------------------------- 350
                       **** ******* **  *  *                                      

consensus_3028#0      TACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAAAGCGCGCGCGGCGGCGGC 598
consensus_3028#1      ------------------------------------------------------------
                                                                                  

consensus_3028#0      GGCGGCGACAGGGGGCGCGAGCTGAGGAAGGT 630
consensus_3028#1      --------------------------------