These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1637 fasta sequence [CACACACACCATAGCCAAAAAAAACACAATCACTCGACCAAACCACACCTAGCTACTACAAAGCTAGTGATCATAAGCTAACCTTAATTAGCTTTAATTAGCCAAGAAGAGACAAAGAGCAAGATCGATCATGTACCACCACCACCATGGCGGCCATGGCGAGGTGGCGAGCCTCCACCTCCTCTCGCCTCCAAACCCTCCCTTCTTCGGCGCCGCCGCGCACCACCACCACCACCACCACGGCCTCATCAACATGGCGCTGCCGCCTCAGGCCTACTTCGTCCCCGCCGCGCCGCCGCCGCCGTTCCAAGAAGCCACTGCTGCGCTCGCCGCCGGCGACGACGCCACCGCCGCGTTGGCGGTGTTTGAGCTGGAGCGCATCCTGGAAGAAGCGGCCGCCGCGGGCGGCGGCGGCGGCAATGGCTCACCGAGCTCGGGCTCCGACGGGTGCTGCTACGGCCTGCAGGGCGTGGCTCCGGCGGCGGAGGAGGAGCGGCGGCGGCGGCGGATGGTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGATGCGCAAGCAGCGGCAGCTCAGCGAGCTGTGGGCGCAGGTCGAGCACCTCCGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCACGCATTGAGGGGCTGCGCCGACGTCCGCCGCGAGAACTCCCGCCTCCGGGACGAGAAGGCCGAGCTCGCCGGCAAGCTCCAGCTGCTGCTCCCGCGGCAGCCGGCGCCGGAGAAGAACGCCGCCGACGACCAGAGTAGCTGCTCCTCGGAGCCATGCAAGAACAGCACTACGACTACCGCTGCTGAATGAATTATATTATTCATTATTATTATTATTATCCACCAAATTTTCACTTGAGAGGATAATAATATTAACAATAATATGTTTATCAATAAGAAAACGTGTATAACTAAACAAGGATAATTACTGGGGATGGAGGCATGCATGCATGCATGCGCCATGAGATCGATTTTTCTGTTTCGAGGAGGTTTTTGCTGTGTATTTTTACAACTAATTATATACTTATACCTGCGGTTAAATTAACATGGATCAATGGATCATATATATTATTTCTATTTACAAGTTGCAAAACTGCAGTTAATAGAACACTAGTAAGACAAAATGATGGGGTAGAAGAGGCATGTACAACTCTAAAAGTAGTAGACTACTTGTCAAAACGTTGTGCAACTATGAAGTTAAAAAAAATAGTGCCTTTCATGTAATGATGTCACGGGGTTCAACTAACTTGTAATGGATTATGCTTTGGGATTGCTAATGGATGGCATACTTTCTTGATGTTAAGTTACCCATAATAACCCAACTGCTGCTGCTCTGTTCTGTAGTTCATTAGCTATTTTACCTAGTTGTATCAAACAAGGTTCTGGATGTGTATCAAACAATTTTGGTACTCCTATATGAATGTTCCCATCAAGATCTGAACCACATATTCCTATTCATTGAGATGCTTATCGAATAGGATTCCAAAGAATCTTAAGGACGAGCCCGGCAACATGTGCCACGAAACAAATCTAGGCTTTTGTCAATACATAAACGTGAGTGTTCATCAAAACAAACGAGCAAATTCAAAAACATAGCATATATATATATATATAAGACAAAAAAA] [+] EMBL AK107150 [CACACACACCATAGCCAAAAAAAACACAATCACTCGACCAAACCACACCTAGCTACTACAAAGCTAGTGATCATAAGCTAACCTTAATTAGCTTTAATTAGCCAAGAAGAGACAAAGAGCAAGATCGATCATGTACCACCACCACCATGGCGGCCATGGCGAGGTGGCGAGCCTCCACCTCCTCTCGCCTCCAAACCCTCCCTTCTTCGGCGCCGCCGCGCACCACCACCACCACCACCACGGCCTCATCAACATGGCGCTGCCGCCTCAGGCCTACTTCGTCCCCGCCGCGCCGCCGCCGCCGTTCCAAGAAGCCACTGCTGCGCTCGCCGCCGGCGACGACGCCACCGCCGCGTTGGCGGTGTTTGAGCTGGAGCGCATCCTGGAAGAAGCGGCCGCCGCGGGCGGCGGCGGCGGCAATGGCTCACCGAGCTCGGGCTCCGACGGGTGCTGCTACGGCCTGCAGGGCGTGGCTCCGGCGGCGGAGGAGGAGCGGCGGCGGCGGCGGATGGTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGATGCGCAAGCAGCGGCAGCTCAGCGAGCTGTGGGCGCAGGTCGAGCACCTCCGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCACGCATTGAGGGGCTGCGCCGACGTCCGCCGCGAGAACTCCCGCCTCCGGGACGAGAAGGCCGAGCTCGCCGGCAAGCTCCAGCTGCTGCTCCCGCGGCAGCCGGCGCCGGAGAAGAACGCCGCCGACGACCAGAGTAGCTGCTCCTCGGAGCCATGCAAGAACAGCACTACGACTACCGCTGCTGAATGAATTATATTATTCATTATTATTATTATTATCCACCAAATTTTCACTTGAGAGGATAATAATATTAACAATAATATGTTTATCAATAAGAAAACGTGTATAACTAAACAAGGATAATTACTGGGGATGGAGGCATGCATGCATGCATGCGCCATGAGATCGATTTTTCTGTTTCGAGGAGGTTTTTGCTGTGTATTTTTACAACTAATTATATACTTATACCTGCGGTTAAATTAACATGGATCAATGGATCATATATATTATTTCTATTTACAAGTTGCAAAACTGCAGTTAATAGAACACTAGTAAGACAAAATGATGGGGTAGAAGAGGCATGTACAACTCTAAAAGTAGTAGACTACTTGTCAAAACGTTGTGCAACTATGAAGTTAAAAAAAATAGTGCCTTTCATGTAATGATGTCACGGGGTTCAACTAACTTGTAATGGATTATGCTTTGGGATTGCTAATGGATGGCATACTTTCTTGATGTTAAGTTACCCATAATAACCCAACTGCTGCTGCTCTGTTCTGTAGTTCATTAGCTATTTTACCTAGTTGTATCAAACAAGGTTCTGGATGTGTATCAAACAATTTTGGTACTCCTATATGAATGTTCCCATCAAGATCTGAACCACATATTCCTATTCATTGAGATGCTTATCGAATAGGATTCCAAAGAATCTTAAGGACGAGCCCGGCAACATGTGCCACGAAACAAATCTAGGCTTTTGTCAATACATAAACGTGAGTGTTCATCAAAACAAACGAGCAAATTCAAAAACATAGCATATATATATATATATAAGACAAAAAAA] consensusID : consensus_3033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [AGAGCAAATTCTTCAGTAAGCAGAATCAAAGCAGATTAACCCTCATCTACTTCTGGCCCTCTAAGAGTTCTCCACTAAGCAAGCGAAAACAGCCATGCTGCACCACCATTACCATGGCGAGGTGGCCAGCCTGCACTGCCTCTCACCTCCAAGCCTACCATTCAGTTCCCACTACCACAGCAACATGATCACCATGGCACCCTCGCCCTTCCACTTCCCAGCAGCTACCTGTGAACCTATCCAGGAATTGCTCCCTGTGGTAGCGGGCAATCGCCCAGCCGGCTCTGGCAGCACAGATGACGCCTACCAGATGGCAGCGGAGGAGGAGCGGAGGCGGCGGAGGATGATCTCCAACCGGGAGTCGGCACGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTCAGCGAGCTGAGGGGGCAGGTTGTCCACCTCCGTGACGCCAACCGCCGCCTCCTTGATGAGCTCAACCAAGCAATGAGGGGCTGCAGTGATGTCCACTGCGAGAACGCCCGGCTCAGGAAGGAGAGGGCCGAGCTCCAGACCAAGCTCGAGCACCTCATGCAAGCACAGAAGAATAACACCTCGCCGAGCTCCTCACAGCCATGCGAGAATATTTGATTACTGAATAATAAATCATTCTTAATTATCTCCTCATTTTAACTACGAGGATTATTATTAGTATATCAAAATAAGACATGTTTTGAGATGCTTCCTTCGGCTTCTGTTTTTTTGTTTTATCTTTTATGTACGGGAATATTCTAACTGCCCATTATTGACATCTTTTTGTCAAGGTGGCTAAGATAAATATGGATTGAGCCTA] [+] EMBL AK108319 [AGAGCAAATTCTTCAGTAAGCAGAATCAAAGCAGATTAACCCTCATCTACTTCTGGCCCTCTAAGAGTTCTCCACTAAGCAAGCGAAAACAGCCATGCTGCACCACCATTACCATGGCGAGGTGGCCAGCCTGCACTGCCTCTCACCTCCAAGCCTACCATTCAGTTCCCACTACCACAGCAACATGATCACCATGGCACCCTCGCCCTTCCACTTCCCAGCAGCTACCTGTGAACCTATCCAGGAATTGCTCCCTGTGGTAGCGGGCAATCGCCCAGCCGGCTCTGGCAGCACAGATGACGCCTACCAGATGGCAGCGGAGGAGGAGCGGAGGCGGCGGAGGATGATCTCCAACCGGGAGTCGGCACGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTCAGCGAGCTGAGGGGGCAGGTTGTCCACCTCCGTGACGCCAACCGCCGCCTCCTTGATGAGCTCAACCAAGCAATGAGGGGCTGCAGTGATGTCCACTGCGAGAACGCCCGGCTCAGGAAGGAGAGGGCCGAGCTCCAGACCAAGCTCGAGCACCTCATGCAAGCACAGAAGAATAACACCTCGCCGAGCTCCTCACAGCCATGCGAGAATATTTGATTACTGAATAATAAATCATTCTTAATTATCTCCTCATTTTAACTACGAGGATTATTATTAGTATATCAAAATAAGACATGTTTTGAGATGCTTCCTTCGGCTTCTGTTTTTTTGTTTTATCTTTTATGTACGGGAATATTCTAACTGCCCATTATTGACATCTTTTTGTCAAGGTGGCTAAGATAAATATGGATTGAGCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3033#0 CACACACACCATAGCCAAAAAAAACACAATCACTCGACCAAACCACACCTAGCTACTACA 60 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 AAGCTAGTGATCATAAGCTAACCTTAATTAGCTTTAATTAGCCAAGAAGAGACAAAGAGC 120 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 AAGATCGATCATGTACCACCACCACCATGGCGGCCATGGCGAGGTGGCGAGCCTCCACCT 180 consensus_3033#1 -----AGAGCAAATTCTTCAGTAAGCAGAA---TCAAAGCAGATTAACCCTCATCTACTT 52 ** ** * * * * ** ** ** * * * ** ** * consensus_3033#0 CCTCTCGCCTCCAAACCCTCCCTTCTTCG-GCG----CCGCCGCGCACCACCACCACCAC 235 consensus_3033#1 CTGGCCCTCTAAGAGTTCTCCACTAAGCAAGCGAAAACAGCCATGCTGCACCACCATTAC 112 * * ** * **** * * *** * *** ** ******** ** consensus_3033#0 CACCACGGCCTCATCAACATGGCGCTGCCGCCTCAGGCCTACTTCGTCCCCGCCGCGCCG 295 consensus_3033#1 CATGGCGAGGTGGCCAGCCTG-CACTGCC-TCTCAC-----CTCCAAGCCTACCATTCAG 165 ** ** * ** * ** * ***** **** ** * ** ** * * consensus_3033#0 CCGCCGCCGTTCCAAGAAGCCACTGCTGCGCTCGCCGCCGGCGACGACGCCACCGCCGCG 355 consensus_3033#1 TTCCCACTACCACAGCAA--------CATGATCACCAT-GGCACCCTCGCC-CTTCCAC- 214 ** * ** ** * ** ** *** * **** * ** * consensus_3033#0 TTGGCGGTGTTTGAGCTGGAGCGCATCCTGGAAGAAGCGGCCGCCGCGGGCGGCGGCGGC 415 consensus_3033#1 TTCCCAGCAGCTACCTGTGAACCTATCCAGGAA-------TTGCTCCCTGTGGTAGCG-- 265 ** * * * ** * **** **** ** * * ** *** consensus_3033#0 GGCAATGGCTCACCGAGCTCGGGCTCCGACGGGTGCTGCTACGGCCTGCAGGGCGTGGCT 475 consensus_3033#1 GGCAATCGCCCAGCCGGCTCTGGC-------AGCACAGATGACGCCTACCAGATG----- 313 ****** ** ** * **** *** * * * * **** * * * consensus_3033#0 CCGGCGGCGGAGGAGGAGCGGCGGCGGCGGCGGATGGTGTCGAACCGGGAGTCGGCGCGG 535 consensus_3033#1 ---GCAGCGGAGGAGGAGCGGAGGCGGCGGAGGATGATCTCCAACCGGGAGTCGGCACGG 370 ** *************** ******** ***** * ** ************** *** consensus_3033#0 CGGTCGCGGATGCGCAAGCAGCGGCAGCTCAGCGAGCTGTGGGCGCAGGTCGAGCACCTC 595 consensus_3033#1 CGGTCGCGCATGCGCAAGCAGCGGCAGCTCAGCGAGCTGAGGGGGCAGGTTGTCCACCTC 430 ******** ****************************** *** ****** * ****** consensus_3033#0 CGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCACGCATTGAGGGGCTGCGCCGAC 655 consensus_3033#1 CGTGACGCCAACCGCCGCCTCCTTGATGAGCTCAACCAAGCAATGAGGGGCTGCAGTGAT 490 ** * ****************** ** *********** *** *********** ** consensus_3033#0 GTCCGCCGCGAGAACTCCCGCCTCCGGGACGAGAAGGCCGAGCTCGCCGGCAAGCTCCAG 715 consensus_3033#1 GTCCACTGCGAGAACGCCCGGCTCAGGAAGGAGAGGGCCGAGCTCCAGACCAAGCTCGAG 550 **** * ******** **** *** ** * **** ********** ******* ** consensus_3033#0 CTGCTGCTCCCGCGGCAGCCGGCGCCGGAGAAGAACGCCGCCGACGACCAGAGTAGCTGC 775 consensus_3033#1 CACCTCAT---------GCAAGCACAGAAGAATAACACC-TCGCCGA-----------GC 589 * ** * ** ** * * **** *** ** ** *** ** consensus_3033#0 TCCTCGGAGCCATGCAAGAACAGCACTACGACTACCGCTGCTGAATGAATTATATTATTC 835 consensus_3033#1 TCCTCACAGCCATGCGAGAATA----TTTGATTAC------TGAATAA--TAAATCATTC 637 ***** ******** **** * * ** *** ***** * ** ** **** consensus_3033#0 ATTATTATTATTATTATCCACCAAATTTTCACTTGAGAGGATAATAATATTAACAATAAT 895 consensus_3033#1 TTAATTAT----------CTCCTCATTTTAACT-ACGAGGAT--TATTATTAGTA----- 679 * ***** * ** ***** *** ****** ** ***** * consensus_3033#0 ATGTTTATCAATAAGAAAACGTGTATAACTAAACAAGGATAATTACTGGGGATGGAGGCA 955 consensus_3033#1 -----TATCAA-AATAAGACATGTTTTG--------AGATGCTTCCTTCGGCT------- 718 ****** ** ** ** *** * *** ** ** ** * consensus_3033#0 TGCATGCATGCATGCGCCATGAGATCGATTTTTCTGTTTCGAGGAGGTTTTTGCTGTGTA 1015 consensus_3033#1 --TCTGTTTTTTTGTTTTAT--------CTTTTATGTA-CGGGAATATTCTAACTGCCCA 767 ** * ** ** **** *** ** * * ** * *** * consensus_3033#0 TTTTTACAACTAATTATATACTTATACCTGCGGTTAA-ATTAACATGGATCAATGGATCA 1074 consensus_3033#1 TTATTGA-------CATCTTTTTGTCAAGGTGGCTAAGATAAATATGGATTGA--GCCTA 818 ** ** ** * ** * * ** *** ** ** ****** * * * consensus_3033#0 TATATATTATTTCTATTTACAAGTTGCAAAACTGCAGTTAATAGAACACTAGTAAGACAA 1134 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 AATGATGGGGTAGAAGAGGCATGTACAACTCTAAAAGTAGTAGACTACTTGTCAAAACGT 1194 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 TGTGCAACTATGAAGTTAAAAAAAATAGTGCCTTTCATGTAATGATGTCACGGGGTTCAA 1254 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 CTAACTTGTAATGGATTATGCTTTGGGATTGCTAATGGATGGCATACTTTCTTGATGTTA 1314 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 AGTTACCCATAATAACCCAACTGCTGCTGCTCTGTTCTGTAGTTCATTAGCTATTTTACC 1374 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 TAGTTGTATCAAACAAGGTTCTGGATGTGTATCAAACAATTTTGGTACTCCTATATGAAT 1434 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 GTTCCCATCAAGATCTGAACCACATATTCCTATTCATTGAGATGCTTATCGAATAGGATT 1494 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 CCAAAGAATCTTAAGGACGAGCCCGGCAACATGTGCCACGAAACAAATCTAGGCTTTTGT 1554 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 CAATACATAAACGTGAGTGTTCATCAAAACAAACGAGCAAATTCAAAAACATAGCATATA 1614 consensus_3033#1 ------------------------------------------------------------ consensus_3033#0 TATATATATATAAGACAAAAAAA 1637 consensus_3033#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||