cluster # 3035

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Oryza sativa
cluster # 3035 cluster # 3035 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3035#0 length = 892 sequences # 1

consensus_3035#1 length = 703 sequences # 1

consensusID : consensus_3035#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 892
fasta sequence

                              [GCGGCATACTGCTCGCGCCGCCTTCCTCTCGCTCCCGCGCCGGCGCTCACCCTCCGTCGCGCGAGAGGGCAAGGCAACGCCGCTGCTCAGTGCTGCCTTCGTTCTCTCTCCCCTTTCCTCCCGTGTGAGATCCTCCATGCCGATGTGGATTCCTTGCTGTCCATCGACGGTTTTCCGAGCTTGGGGGGAGGAGATGAAGAACAACTCCGTTTCGGATCCGGCGTCCGTGTCCGATTCTCTTCTCGATCGGATCCCACACCCACACACCACACCCGCCGCCACACAGCGAGAGGAGCAGAGGAATTAAGCAGAGTGTTGGAAAGGAACAAGGAATAATACGGCGGCCCGGAGATGAAGTCCGGCAAGCCGCCGACGGCGGGGGTCCGCGTATTCGGCGGGCTACGCTACGCTCCGCTGGATGGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGAGCTGTTTACACCTTGTACATGGCTACGACGGTGCTTCTCTACATTTTTGGCATGGTTACTGCTCTCAAGGAATACGAATTGTTAGTGCCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCGATGGGGCTCCCTGATGGTAACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTAGCCTAAACAAAGTGTGCCTAAGCAGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGCCACTTCTAGTTGCCGTCTTCTTTAGAAGACTTTTAGATTTAGGTGTGTATTCTATTAGAATATATCTTAAAGCAACTTTGTATGTTTCTATTAGTTATATGATGCTTCATGGTTCTTTTGT]

[+] EMBL AK107827             [GCGGCATACTGCTCGCGCCGCCTTCCTCTCGCTCCCGCGCCGGCGCTCACCCTCCGTCGCGCGAGAGGGCAAGGCAACGCCGCTGCTCAGTGCTGCCTTCGTTCTCTCTCCCCTTTCCTCCCGTGTGAGATCCTCCATGCCGATGTGGATTCCTTGCTGTCCATCGACGGTTTTCCGAGCTTGGGGGGAGGAGATGAAGAACAACTCCGTTTCGGATCCGGCGTCCGTGTCCGATTCTCTTCTCGATCGGATCCCACACCCACACACCACACCCGCCGCCACACAGCGAGAGGAGCAGAGGAATTAAGCAGAGTGTTGGAAAGGAACAAGGAATAATACGGCGGCCCGGAGATGAAGTCCGGCAAGCCGCCGACGGCGGGGGTCCGCGTATTCGGCGGGCTACGCTACGCTCCGCTGGATGGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGAGCTGTTTACACCTTGTACATGGCTACGACGGTGCTTCTCTACATTTTTGGCATGGTTACTGCTCTCAAGGAATACGAATTGTTAGTGCCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCGATGGGGCTCCCTGATGGTAACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTAGCCTAAACAAAGTGTGCCTAAGCAGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGCCACTTCTAGTTGCCGTCTTCTTTAGAAGACTTTTAGATTTAGGTGTGTATTCTATTAGAATATATCTTAAAGCAACTTTGTATGTTTCTATTAGTTATATGATGCTTCATGGTTCTTTTGT]




>consensus_3035#0
GCGGCATACTGCTCGCGCCGCCTTCCTCTCGCTCCCGCGCCGGCGCTCACCCTCCGTCGC
GCGAGAGGGCAAGGCAACGCCGCTGCTCAGTGCTGCCTTCGTTCTCTCTCCCCTTTCCTC
CCGTGTGAGATCCTCCATGCCGATGTGGATTCCTTGCTGTCCATCGACGGTTTTCCGAGC
TTGGGGGGAGGAGATGAAGAACAACTCCGTTTCGGATCCGGCGTCCGTGTCCGATTCTCT
TCTCGATCGGATCCCACACCCACACACCACACCCGCCGCCACACAGCGAGAGGAGCAGAG
GAATTAAGCAGAGTGTTGGAAAGGAACAAGGAATAATACGGCGGCCCGGAGATGAAGTCC
GGCAAGCCGCCGACGGCGGGGGTCCGCGTATTCGGCGGGCTACGCTACGCTCCGCTGGAT
GGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGAGCTGTTTACACCTTGTAC
ATGGCTACGACGGTGCTTCTCTACATTTTTGGCATGGTTACTGCTCTCAAGGAATACGAA
TTGTTAGTGCCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGTGGATT
GCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCGATGGGGCTCCCTGATGGT
AACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTAGCCTAAACAAAGTGTGCC
TAAGCAGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGCCACTTCTAG
TTGCCGTCTTCTTTAGAAGACTTTTAGATTTAGGTGTGTATTCTATTAGAATATATCTTA
AAGCAACTTTGTATGTTTCTATTAGTTATATGATGCTTCATGGTTCTTTTGT

consensusID : consensus_3035#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence

                              [AGGACGCGACAACTGGGAGAGGAAGCAGNGNGNTGGCNNGANACACGGGATAAGCCGGCGGCCGGAGATGAANNCCGNCAAGCCGATCTGCGAGAAGGNGAAGCCCGCAGTAGCNGTCCGCATATTCGGCGGNCTACGNTACGCTCCGCCGGATGGNCTGGTCGTCNACACTCCTCTACTGGCTGCCTTCATCCGAGCTGTTTACACCTTATACATGGCTACGACAGTGTTTCTCTACATTTTTGNCATGGGTACTGCTATCAAGGAATACGAAATGTTGGTGGCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGNGGATTGCAGCACCATTCCTTANGACTGNAGCAATTGNGAAANATGCGANGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGGAAGGATGTCAGCCCTAGCCTGAACAAAGTATGCCTAAGAAGGGTTGCTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAGAAGACCTTTTAGATTCAGATGTGTATTTCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGCTCCATATGGGCACAGGACTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAAATTCATGGATCATTTGCAAAACAAACTATACATACTTATCATGC]

[+] EMBL CA765024             [AGGACGCGACAACTGGGAGAGGAAGCAGNGNGNTGGCNNGANACACGGGATAAGCCGGCGGCCGGAGATGAANNCCGNCAAGCCGATCTGCGAGAAGGNGAAGCCCGCAGTAGCNGTCCGCATATTCGGCGGNCTACGNTACGCTCCGCCGGATGGNCTGGTCGTCNACACTCCTCTACTGGCTGCCTTCATCCGAGCTGTTTACACCTTATACATGGCTACGACAGTGTTTCTCTACATTTTTGNCATGGGTACTGCTATCAAGGAATACGAAATGTTGGTGGCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGNGGATTGCAGCACCATTCCTTANGACTGNAGCAATTGNGAAANATGCGANGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGGAAGGATGTCAGCCCTAGCCTGAACAAAGTATGCCTAAGAAGGGTTGCTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAGAAGACCTTTTAGATTCAGATGTGTATTTCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGCTCCATATGGGCACAGGACTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAAATTCATGGATCATTTGCAAAACAAACTATACATACTTATCATGC]




>consensus_3035#1
AGGACGCGACAACTGGGAGAGGAAGCAGNGNGNTGGCNNGANACACGGGATAAGCCGGCG
GCCGGAGATGAANNCCGNCAAGCCGATCTGCGAGAAGGNGAAGCCCGCAGTAGCNGTCCG
CATATTCGGCGGNCTACGNTACGCTCCGCCGGATGGNCTGGTCGTCNACACTCCTCTACT
GGCTGCCTTCATCCGAGCTGTTTACACCTTATACATGGCTACGACAGTGTTTCTCTACAT
TTTTGNCATGGGTACTGCTATCAAGGAATACGAAATGTTGGTGGCACTGTCCATAATTGT
AGTCATGCAGCCCTTCTTCATATTGATGNGGATTGCAGCACCATTCCTTANGACTGNAGC
AATTGNGAAANATGCGANGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGG
AAGGATGTCAGCCCTAGCCTGAACAAAGTATGCCTAAGAAGGGTTGCTCAAGTTTATCAT
AATTGTGCCCTCTTTAGAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAGAAGACCTTTT
AGATTCAGATGTGTATTTCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGCTC
CATATGGGCACAGGACTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAAA
TTCATGGATCATTTGCAAAACAAACTATACATACTTATCATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3035#0      GCGGCATACTGCTCGCGCCGCCTTCCTCTCGCTCCCGCGCCGGCGCTCACCCTCCGTCGC 60
consensus_3035#1      ------------------------------------------------------------
                                                                                  

consensus_3035#0      GCGAGAGGGCAAGGCAACGCCGCTGCTCAGTGCTGCCTTCGTTCTCTCTCCCCTTTCCTC 120
consensus_3035#1      ------------------------------------------------------------
                                                                                  

consensus_3035#0      CCGTGTGAGATCCTCCATGCCGATGTGGATTCCTTGCTGTCCATCGACGGTTTTCCGAGC 180
consensus_3035#1      ------------------------------------------------------------
                                                                                  

consensus_3035#0      TTGGGGGGAGGAGATGAAGAACAACTCCGTTTCGGATCCGGCGTCCGTGTCCGATTCTCT 240
consensus_3035#1      ------------------------------------------------------------
                                                                                  

consensus_3035#0      TCTCGATCGGATCCCACACCCACACACCACACCCGCCGCCACACAGCGAGAGGAGCAGAG 300
consensus_3035#1      ------------------------------------------AGGACGCGAC-AACTGGG 17
                                                                *   ** **  * * * *

consensus_3035#0      GAATTAAGCAGAGTGTTGGAAAGGAACAAGGAATAATACGGCGGCCCGGAGATGAAGTCC 360
consensus_3035#1      AGAGGAAGCAGNGNGNTGGCNNGANACACGGGATAAGCCGGCGGCC-GGAGATGAANNCC 76
                        *  ****** * * ***   *  *** ** ****  ******** *********  **

consensus_3035#0      GGCAAGCCG------------------CCGACGGCGGGGGTCCGCGTATTCGGCGGGCTA 402
consensus_3035#1      GNCAAGCCGATCTGCGAGAAGGNGAAGCCCGCAGTAGCNGTCCGCATATTCGGCGGNCTA 136
                      * *******                  **  * *  *  ****** ********** ***

consensus_3035#0      CGCTACGCTCCGCTGGATGGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGA 462
consensus_3035#1      CGNTACGCTCCGCCGGATGGNCTGGTCGTCNACACTCCTCTACTGGCTGCCTTCATCCGA 196
                      ** ********** ******  ******** ***  *********** *** ********

consensus_3035#0      GCTGTTTACACCTTGTACATGGCTACGACGGTGCTTCTCTACATTTTTGGCATGGTTACT 522
consensus_3035#1      GCTGTTTACACCTTATACATGGCTACGACAGTGTTTCTCTACATTTTTGNCATGGGTACT 256
                      ************** ************** *** *************** ***** ****

consensus_3035#0      GCTCTCAAGGAATACGAATTGTTAGTGCCACTGTCCATAATTGTAGTCATGCAGCCCTTC 582
consensus_3035#1      GCTATCAAGGAATACGAAATGTTGGTGGCACTGTCCATAATTGTAGTCATGCAGCCCTTC 316
                      *** ************** **** *** ********************************

consensus_3035#0      TTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCG 642
consensus_3035#1      TTCATATTGATGNGGATTGCAGCACCATTCCTTANGACTGNAGCAATTGNGAAANATGCG 376
                      ************ ********************* ***** ******** **** *****

consensus_3035#0      ATGGGGCTCCCTGATGGTAACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTA 702
consensus_3035#1      ANGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGGAAGGATGTCAGCCCTA 436
                      * *** ********* **** *************** ***********************

consensus_3035#0      GCCTAAACAAAGTGTGCCTAAGCAGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTA 762
consensus_3035#1      GCCTGAACAAAGTATGCCTAAGAAGGGTTGCTCAAGTTTATCATAATTGTGCCCTCTTTA 496
                      **** ******** ******** ******  *****************************

consensus_3035#0      GAAATAGGCCACTTCTAGTTGCCGTCTTCTTTAGAAGAC-TTTTAGATTTAGGTGTGTAT 821
consensus_3035#1      GAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAGAAGACCTTTTAGATTCAGATGTGTAT 556
                      ******** *****  ** *** **************** ********* ** *******

consensus_3035#0      TCTATTAGAATATATCTTAA-AGCAACTTTG------TATGTTTCTAT-TAGTTATATGA 873
consensus_3035#1      T-TCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGCTCCATATGGGCACAGGA 615
                      * * ****** **** **** **   * * *      ***   ** ** * *  * * **

consensus_3035#0      TGCTTCATGGTTCTTTTGT----------------------------------------- 892
consensus_3035#1      CTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAAATTCATGGATCATTTG 675
                           *  * ** *    *                                         

consensus_3035#0      ----------------------------
consensus_3035#1      CAAAACAAACTATACATACTTATCATGC 703