These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1587 fasta sequence [TAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCACCCCGCCATGTGAAAGGCAGCACAAACAGATTAGAAACAGATCAACAATGAGCAACTAGGATACCCGATACCCTTCAGGAAAAGAAAAAGGAATAAGCATTAAGTAAGTAGCAGTAACCTTACTACATTCAGAATAGATTATCACAGAAACGTACAGTTTCAGGTTAAGCAGAGCAGCCTGAAACCTTTACAGCAAAGCAAGCCATAGCGCTCAACGCTGGCATGCATCGTCGTCTGGGATTCCGAATCTTTGGATGCCACTAGGCTACCAAGCCCACAACACAGAGTCTTCATCACAAGCGTGCCTCAGTTTGCAGGGTGGGGGTGTCAGGGTTTAACAACCGTGAAAAGCATTAGCAAGTGCAAAAGCAAGGGCACCATGCAGTGTGGCTGGTAAAAACTGTCGACGGAGACCAACGCAAGTGCATCAGTGCATGCTCTATCTTCTTTGCTGTTGTTAAGGAGAGGGGGAGACCGAGCTAAAGCGGCAAAATCATTGACGGCTCTTTGGTGAAAGGATGGCTAGGGTTCATGTGCTTTGCCATTGCATTGGGGTTGTAGACTGAATGAGTTGCTGCTCTACAGATCTAGTGCACAAAGCCGGAATTTTTTTTTATGCACACATTCCAGATAGGAATCATTTGACAAAGAGAATCATGCTTTTATGCAAAGGTTTGACTATGTCTGGAGTCTGGTAGCTAAGCGAGGAAGTGAAAGAAAGCAGGATGCTTTCTTGACCATGTGTGCCGTACTTACTATCCTGTCTCGCAAGTGCTCCCTTCTTTTGTGTAAACTTGTATTGGAACAAAGGACTAAATCCTGACAAGGCATCTGAGGCATTAATTAGTTGGAAACCGTTGGTTTCACTTCTCCTAAGATGCTGGTTTTGGTTAGGAATATGTGATCCTGTAACTTGTGGAAAATGTGATTCTAGAACTTCAGGTTGATCTAGAAAGGACAGCAGAGAGACCCAAGTATCCAACAGTATTATGCTAGTCATTCAGTGAACACTGAACAGAGGCCTGAAGGGTAAAAGCAGCAAGGAATTAGGCAGTACACATGTCTCCAACCACATCGGCCCACTAGAGCAAAGAGGGTGAGGAACTTGTCACATGCTGCACACATGTTTGCAAAGGGAAGAAGCTGTGGTCCAATTGCATCCAGCAATGGATTTGTCCCAGGCAGCACTGAGCATGTTTCCCAGCACTATGGGCAATTAAAAGCAAAAGATGACCCCATTTTCCATTTCTAC] [+] EMBL AK109871 [TAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCACCCCGCCATGTGAAAGGCAGCACAAACAGATTAGAAACAGATCAACAATGAGCAACTAGGATACCCGATACCCTTCAGGAAAAGAAAAAGGAATAAGCATTAAGTAAGTAGCAGTAACCTTACTACATTCAGAATAGATTATCACAGAAACGTACAGTTTCAGGTTAAGCAGAGCAGCCTGAAACCTTTACAGCAAAGCAAGCCATAGCGCTCAACGCTGGCATGCATCGTCGTCTGGGATTCCGAATCTTTGGATGCCACTAGGCTACCAAGCCCACAACACAGAGTCTTCATCACAAGCGTGCCTCAGTTTGCAGGGTGGGGGTGTCAGGGTTTAACAACCGTGAAAAGCATTAGCAAGTGCAAAAGCAAGGGCACCATGCAGTGTGGCTGGTAAAAACTGTCGACGGAGACCAACGCAAGTGCATCAGTGCATGCTCTATCTTCTTTGCTGTTGTTAAGGAGAGGGGGAGACCGAGCTAAAGCGGCAAAATCATTGACGGCTCTTTGGTGAAAGGATGGCTAGGGTTCATGTGCTTTGCCATTGCATTGGGGTTGTAGACTGAATGAGTTGCTGCTCTACAGATCTAGTGCACAAAGCCGGAATTTTTTTTTATGCACACATTCCAGATAGGAATCATTTGACAAAGAGAATCATGCTTTTATGCAAAGGTTTGACTATGTCTGGAGTCTGGTAGCTAAGCGAGGAAGTGAAAGAAAGCAGGATGCTTTCTTGACCATGTGTGCCGTACTTACTATCCTGTCTCGCAAGTGCTCCCTTCTTTTGTGTAAACTTGTATTGGAACAAAGGACTAAATCCTGACAAGGCATCTGAGGCATTAATTAGTTGGAAACCGTTGGTTTCACTTCTCCTAAGATGCTGGTTTTGGTTAGGAATATGTGATCCTGTAACTTGTGGAAAATGTGATTCTAGAACTTCAGGTTGATCTAGAAAGGACAGCAGAGAGACCCAAGTATCCAACAGTATTATGCTAGTCATTCAGTGAACACTGAACAGAGGCCTGAAGGGTAAAAGCAGCAAGGAATTAGGCAGTACACATGTCTCCAACCACATCGGCCCACTAGAGCAAAGAGGGTGAGGAACTTGTCACATGCTGCACACATGTTTGCAAAGGGAAGAAGCTGTGGTCCAATTGCATCCAGCAATGGATTTGTCCCAGGCAGCACTGAGCATGTTTCCCAGCACTATGGGCAATTAAAAGCAAAAGATGACCCCATTTTCCATTTCTAC] consensusID : consensus_3036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1395 fasta sequence [AACATCTCAATTCTCAGCCGGATCAAGAACACACGGCATAAAAGGTGGCATTGACTCACGAACCCTGCGACTGCGTTTCGACCAGGGCAAACACACACGAACAGCGCGCGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACAAAACAGGAGCACAGGAGTGTCAAGGCAGGAGAGACCAAGAGAGATCCAAAACCCTCGGACCTACTTCTCCCCAGCTTCAGCCCTCCTACAGGTAAATCCTTGAAGCAAACCAAGCAGCAAAACGCTCTCTTCTCCTTCGGAGAGGGCGGCTACCTGTTGCGCATGGGCCATCTCCCTGATTCCTGAACAAACTACTCACACTGACACACACTCACCAAAACAGCTAAATTAGCTACACTTACCATGAATAGAATCATGAATGATCAGACCAACTAATATGATGAGCTGCATAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCTTTATCTGCATGGATCCAATGTCGCCCTGGCCGTCCTCGAACTCGACCAGCAGTGACAGCCAGAAGTTCGTCGAGCCCTCGTTTACACGGAAGGCTATGTTCTTCCCGCCGTACTTGCACGCAGTCCTGGTATATTTGAACACTTCTGTAGACGACCGACAGCTGGCCTCGGTCTCGCAGGTGGCCGCCGGCGCCGGCGACCGCCATCCTGCTGAATGCGGCGCCGCTGAGGTCGAAGAGCGTGCGGCCGAAGGCGCACAGCCCGCCGGGGCACTCGTCGGTGACGATGACCGTGACGGCGCGGCGGGAGCAGATGCCGTGGTCGAGGCACTTCACCTTGTAGCAGGCGCCGCAGCCCTCGCCGTCCTTGAACAGCACCGGGCTCACCGACCCCACCCGCGCCTTCATCGGCACCACGTCCACCAGCGATCCATACCCACACGCCCCGCCTGAAAAATATGACAAGAAAAACGTTTTGCTTTGGTTGAACCCAACAAAGAAATTATCGCCAATGGCAATGCCAAATTGCACTATACTAGATTGTAGCGTGCAAGAACTGGACGGACGCCAACTGTTTGGCCGTAATCAGTGATCACAGAGTCAAGCATGTGGTTACAGA] [-] EMBL AK107184 [AACATCTCAATTCTCAGCCGGATCAAGAACACACGGCATAAAAGGTGGCATTGACTCACGAACCCTGCGACTGCGTTTCGACCAGGGCAAACACACACGAACAGCGCGCGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACAAAACAGGAGCACAGGAGTGTCAAGGCAGGAGAGACCAAGAGAGATCCAAAACCCTCGGACCTACTTCTCCCCAGCTTCAGCCCTCCTACAGGTAAATCCTTGAAGCAAACCAAGCAGCAAAACGCTCTCTTCTCCTTCGGAGAGGGCGGCTACCTGTTGCGCATGGGCCATCTCCCTGATTCCTGAACAAACTACTCACACTGACACACACTCACCAAAACAGCTAAATTAGCTACACTTACCATGAATAGAATCATGAATGATCAGACCAACTAATATGATGAGCTGCATAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTGCCTTTGCGGGCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCCAGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCACGAGGCACCACGTGGCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCTTTATCTGCATGGATCCAATGTCGCCCTGGCCGTCCTCGAACTCGACCAGCAGTGACAGCCAGAAGTTCGTCGAGCCCTCGTTTACACGGAAGGCTATGTTCTTCCCGCCGTACTTGCACGCAGTCCTGGTATATTTGAACACTTCTGTAGACGACCGACAGCTGGCCTCGGTCTCGCAGGTGGCCGCCGGCGCCGGCGACCGCCATCCTGCTGAATGCGGCGCCGCTGAGGTCGAAGAGCGTGCGGCCGAAGGCGCACAGCCCGCCGGGGCACTCGTCGGTGACGATGACCGTGACGGCGCGGCGGGAGCAGATGCCGTGGTCGAGGCACTTCACCTTGTAGCAGGCGCCGCAGCCCTCGCCGTCCTTGAACAGCACCGGGCTCACCGACCCCACCCGCGCCTTCATCGGCACCACGTCCACCAGCGATCCATACCCACACGCCCCGCCTGAAAAATATGACAAGAAAAACGTTTTGCTTTGGTTGAACCCAACAAAGAAATTATCGCCAATGGCAATGCCAAATTGCACTATACTAGATTGTAGCGTGCAAGAACTGGACGGACGCCAACTGTTTGGCCGTAATCAGTGATCACAGAGTCAAGCATGTGGTTACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3036#0 TAACAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGC-CACGTCG----GGCCTGC 55 consensus_3036#1 -----------AACATCTCAATTCTCAGCCGGATCAAGAACACACGGCATAAAAGGTGGC 49 * ** * * *** ** * * * **** * * ** consensus_3036#0 CTTTGCGGGCCCACCTGGCAGTT---TCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGC 112 consensus_3036#1 ATTGACTCACGAACCCTGCGACTGCGTTTCGACCAGGGCAAACACACACGAACAGCGCGC 109 ** * * *** ** * * ** * * **** * ** ** consensus_3036#0 GGACCCCCACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTG 172 consensus_3036#1 GCGCGCGCGCGCGCGCGCACACACACACACACACACACACACAAAA--CAGGAGCACAGG 167 * * * * * ** * * * * * * * * *** * * * consensus_3036#0 GGCTTCCAGTTCCTGGGGAT-----GACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACA 227 consensus_3036#1 AGTGTCAAGGCAGGAGAGACCAAGAGAGATCCAAAACCCTCGG-ACCTACTTCTCCC-CA 225 * ** ** * ** ** *** ** * * *** ** ** ** consensus_3036#0 GCGTCGTCAACCTCACCGAGAAGGGCCCGACAAGCGGGCCCCGCA-CGAGGCACCACGTG 286 consensus_3036#1 GCTTCAGCCCTCCTACAGGTAAATCCTTGA--AGCAAACCAAGCAGCAAAACGCTCTCTT 283 ** ** * * ** * ** * ** *** ** *** * * * * * consensus_3036#0 GCCCCCCACACATGCTTCATGTCCAGCCACTCCACTGAGTTCGCCTGCACCCCGCCATGT 346 consensus_3036#1 CTCCTTCGGAGAGG----GCGGCTACCTGTTGCGCATGGGCCATCT---CCCTGATTCCT 336 ** * * * * * * * * * * * * * ** *** * * consensus_3036#0 GAAAGGCAGCACAAACAGATTAGAAACAGATCAACAATGAGCAACTAGGATACCCGATAC 406 consensus_3036#1 GAA---CAAACTACTCACACT-GACACACACTCACCA-AAACAGCTAAATTAGCT-ACAC 390 *** ** * ** * * ** *** * ** * * ** *** ** * * ** consensus_3036#0 CCTTCAGGAAAAGAAAAAGGAATAAGCATTAAGTAAGTAGCAGTAACCTTACTACATTCA 466 consensus_3036#1 TTACCATGAATAGAATCATGAATGATCA--GACCAACTAATATGA--TGAGCTGCATA-A 445 ** *** **** * **** * ** * ** ** * * ** *** * consensus_3036#0 GAATAGATTATCACAGAAACGTACAGTTTCAGGTTAAGCAGAGCAGCCTGAAACCTTTAC 526 consensus_3036#1 CAATGGAGGATGCCTGGCTCTCCTGCCTGACCGACTGCCACGTCGGGCCTG--CCTTTGC 503 *** ** ** * * * * * ** * * * ***** * consensus_3036#0 AGCAAAGCAAGCCATAGCGCTCAACGCTGGCATGCATCGTCGTCTGGGATTCCGAATCTT 586 consensus_3036#1 GG--GCCCACCTGGCAGTTTCCCGGGCCGATAAAACGTGGGCCCTGGGCCGGCGGACCCC 561 * ** ** * ** * * * ***** ** * * consensus_3036#0 TGGATG-CCACTAGGCTACC--AAGCCCACAACACAGAGTCTTCATCACAAGCGTGCCTC 643 consensus_3036#1 CACCCGATCAGAGGGCGGCCTCGAAGTTGAGGCGCGAGGTGTAGGTGGCCGTGGGCTTCC 621 * ** *** ** * * * ** * * * * * consensus_3036#0 AGTTTGCAGGGTGGGGGTGTCAGGGTTTAACAACC------GTGAAAAGCATTAGCAAGT 697 consensus_3036#1 AGTTCCTGGGGATGACGTCCCGGGCCGTGAGCGCCTTCTGGGCCGACAGCGTCGTCAACC 681 **** *** * ** * ** * * ** * * *** * *** consensus_3036#0 GCAAAAGCAAGGGCACCATGCAGTGTGGCTGGTAAAAACTGTCGACGGAGACCAACGCAA 757 consensus_3036#1 TCACCGAGAAGGGCCCGACA-AGCGGGCCCCGCACGAGGCACC-ACGTGGCCCCCCACAC 739 ** ****** * * ** * * * * * * * *** * ** * ** consensus_3036#0 GTGCATCAGTGCATGCTCTATCTTCTTTGCTGTTGTTAAGGAGAGGGGGAGACCGAGCTA 817 consensus_3036#1 ATGCTTCA-TGTCCAGCCACTCCACTGAGTTCGCCTGCTTTATCTGCATGGATC---CAA 795 *** *** ** * ** ** * * * * * ** * * * consensus_3036#0 AAGCGGCAAAATCATTGACGGCTCTTTGGTGAAAGGATGGCTAGG-GTTCATGTGCTTTG 876 consensus_3036#1 TGTCGCCCTGGCCGTCCTCGAACTCGACCAGCAGTGACAGCCAGAAGTTCGTCGAGCCCT 855 ** * * * ** * * ** ** ** **** * consensus_3036#0 CCATTGCATTGG-GGTTGTAGACTGAATGAGTTGCTGCTCTACAGATCTAGTGCACAAAG 935 consensus_3036#1 CGTTTACACGGAAGGCTATGTTCTTCCCGCCGTACTTGCACGCAGTCCTGGTATAT---- 911 * ** ** * ** * * ** * * ** *** ** ** * consensus_3036#0 CCGGAATTTTTTTTTATGCACACATTCCAGATAGGAATCATTTGACAAAGAGAATCATGC 995 consensus_3036#1 -TTGAACACTTCTGTAGACGACCGA--CAGCTGGCCTCGGTCTCGCAGGTGGCCGCCGGC 968 *** ** * ** * * *** * * * * ** * * ** consensus_3036#0 TTTTATG-CAAAGGTTTGACTATGTCTGGAGTCTGGTAGCTAAGCGAGGAAGTGAAAGAA 1054 consensus_3036#1 GCCGGCGACCGCCATCCTGCTGAATGCGGCGCCGCTGAGGTCGAAGAGCGTGCGGCCGAA 1028 * * * ** * ** * * ** * *** * * *** consensus_3036#0 AGCAGGATGCTTTCTTGACCATGTGT--GCCGTACTTACTATCCTGTCTCG-CAAGTGCT 1111 consensus_3036#1 GGCGCACAGCCCGCCGGGGCACTCGTCGGTGACGATGACCGTGACGGCGCGGCGGGAGCA 1088 ** ** * * ** ** * * ** * * * ** * * ** consensus_3036#0 CCCTTCTT--TTGTGTAAACTTGTATTGGAACAAAGGACTAAATCCTGACAAGGCATCTG 1169 consensus_3036#1 GATGCCGTGGTCGAGGCACTTCACCTTGTAGCAGGCGCCGCAGCCCTCGCCGTCCTTGAA 1148 * * * * * * * *** * ** * * * *** * * * consensus_3036#0 AGGCATTAATTAGTTGGAAACCGTTGGTTTCACTTCTCCTAAGATGCTGGTTTTGGTTAG 1229 consensus_3036#1 CAGCACCGGGCTCACCGACCCCACC-----CGCGCCTTCATCGGCACCA-CGTCCACCAG 1202 *** ** ** * * ** * * * * ** consensus_3036#0 GAATATGTGATCCTGTAACTTG--TGGAAAATGTGATTCTAGAACTTCAGGTTGATCTAG 1287 consensus_3036#1 CGATCCATACCCACACGCCCCGCCTGAAAAATATGA--CAAGAAAAACGTTTTGCTTTGG 1260 ** * * * * ** ***** *** * **** * *** * * * consensus_3036#0 A-AAGGACAGCAGAGAGACCCAAGTATCCAACAGTATTATGCTA-GTCATTC-AGTGAAC 1344 consensus_3036#1 TTGAACCCAACAAAGAAATTATCGCCAATGGCAATGCCAAATTGCACTATACTAGATTGT 1320 * ** ** *** * * ** * * * ** * ** consensus_3036#0 ACTGAACAGAGGCCTGAAGGGTAAAAGCAGCAAGGAATTAGGCAGTACACATGTCTCCAA 1404 consensus_3036#1 AGCGTGCAAGAACTGGACGGACGCCAACTGTTTGGCCGTAATCAGTGATCACAGAGTCAA 1380 * * ** * ** ** * * * ** ** **** ** *** consensus_3036#0 CCACATCGGCCCACTAGAGCAAAGAGGGTGAGGAACTTGTCACATGCTGCACACATGTTT 1464 consensus_3036#1 GCATGTGGTTACAGA--------------------------------------------- 1395 ** * * ** consensus_3036#0 GCAAAGGGAAGAAGCTGTGGTCCAATTGCATCCAGCAATGGATTTGTCCCAGGCAGCACT 1524 consensus_3036#1 ------------------------------------------------------------ consensus_3036#0 GAGCATGTTTCCCAGCACTATGGGCAATTAAAAGCAAAAGATGACCCCATTTTCCATTTC 1584 consensus_3036#1 ------------------------------------------------------------ consensus_3036#0 TAC 1587 consensus_3036#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||