cluster # 3042

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Oryza sativa
cluster # 3042 cluster # 3042 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3042#0 length = 903 sequences # 1

consensus_3042#1 length = 545 sequences # 1

consensusID : consensus_3042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 903
fasta sequence

                              [AAAATCGCCCGGCTCCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACAACGACGACGACCGTGACGCCGCCGACTGCTCCCTCCATTCCAGATCCGCGCGCCGCCGGCTCCCTCCTCTTCCACGTCCGCGCAGCCGGCTCCCTCCACAACGACGTCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACGATGACGACAACCGCGACGCCTCCGACGGCTCCCTCCGCTCCAGATCCGCGCGCCGCCGGCTCACTCCTCTCCCACGTCCAGGCTGTCGGCTCCCTCCACGACGACGTCCGCGCGCTGCCGCATCCCTCCGTCGCTGGCCATGACGAGCGACGACGACGGCTCCAGATCCGCGCGTTGCCGGCTCCCTCCTCTCCCACGTCCGCGCCACTGGCTCCCTTCACGACAACGTCCGCGCGCCGCCGCATCCCTCCGCTGCCGGCCACGACGAGCGACGACGACGGCTCCAGATCCGTGCGCCGCCGGCTTCCCTCCTCGCCGCCTCTACCAGCCGCTTCATCTCCTCGCCCCCTCCGCCGCCGCGCCGACAACGACGATGACGGTGACGATGACGACGACGACGGCGCCGACGACGACGGGTGGAGGGGAGCCCTGGCCGGCGGTGCCCCGTGGTTTTTTTTATTTTCCTGGGATGATTTTCGCTGGCGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAGCGGCGATCCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTTCTAGTAGTGATCCATTCCATCTGATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATATATCGGGTCTA]

[+] EMBL AK110629             [AAAATCGCCCGGCTCCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACAACGACGACGACCGTGACGCCGCCGACTGCTCCCTCCATTCCAGATCCGCGCGCCGCCGGCTCCCTCCTCTTCCACGTCCGCGCAGCCGGCTCCCTCCACAACGACGTCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACGATGACGACAACCGCGACGCCTCCGACGGCTCCCTCCGCTCCAGATCCGCGCGCCGCCGGCTCACTCCTCTCCCACGTCCAGGCTGTCGGCTCCCTCCACGACGACGTCCGCGCGCTGCCGCATCCCTCCGTCGCTGGCCATGACGAGCGACGACGACGGCTCCAGATCCGCGCGTTGCCGGCTCCCTCCTCTCCCACGTCCGCGCCACTGGCTCCCTTCACGACAACGTCCGCGCGCCGCCGCATCCCTCCGCTGCCGGCCACGACGAGCGACGACGACGGCTCCAGATCCGTGCGCCGCCGGCTTCCCTCCTCGCCGCCTCTACCAGCCGCTTCATCTCCTCGCCCCCTCCGCCGCCGCGCCGACAACGACGATGACGGTGACGATGACGACGACGACGGCGCCGACGACGACGGGTGGAGGGGAGCCCTGGCCGGCGGTGCCCCGTGGTTTTTTTTATTTTCCTGGGATGATTTTCGCTGGCGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAGCGGCGATCCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTTCTAGTAGTGATCCATTCCATCTGATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATATATCGGGTCTA]




>consensus_3042#0
AAAATCGCCCGGCTCCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCACC
GGCGGCCTCCCTCCTCGACAACGACGACGACCGTGACGCCGCCGACTGCTCCCTCCATTC
CAGATCCGCGCGCCGCCGGCTCCCTCCTCTTCCACGTCCGCGCAGCCGGCTCCCTCCACA
ACGACGTCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACGATG
ACGACAACCGCGACGCCTCCGACGGCTCCCTCCGCTCCAGATCCGCGCGCCGCCGGCTCA
CTCCTCTCCCACGTCCAGGCTGTCGGCTCCCTCCACGACGACGTCCGCGCGCTGCCGCAT
CCCTCCGTCGCTGGCCATGACGAGCGACGACGACGGCTCCAGATCCGCGCGTTGCCGGCT
CCCTCCTCTCCCACGTCCGCGCCACTGGCTCCCTTCACGACAACGTCCGCGCGCCGCCGC
ATCCCTCCGCTGCCGGCCACGACGAGCGACGACGACGGCTCCAGATCCGTGCGCCGCCGG
CTTCCCTCCTCGCCGCCTCTACCAGCCGCTTCATCTCCTCGCCCCCTCCGCCGCCGCGCC
GACAACGACGATGACGGTGACGATGACGACGACGACGGCGCCGACGACGACGGGTGGAGG
GGAGCCCTGGCCGGCGGTGCCCCGTGGTTTTTTTTATTTTCCTGGGATGATTTTCGCTGG
CGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAGCGGCGAT
CCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTTCTAGTAG
TGATCCATTCCATCTGATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATATATCGGGT
CTA

consensusID : consensus_3042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [AGAAATCGCCGGCTCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCGCCGGCGGGCTCCCTCCTCGACAACGACAAAAAANCGTGACGCCGCCGACTGCTCCCTCCGCTCCAGATTCGCGCGCCGCCGGNTCCCTCCTCTTCCACGTNCGCGCAGCCGGNTCCCTCCACAACGANATCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGGGGGCTCCCTCCTCGACNANAAAAAAAACCGCGANCCTCCGANGGGTCCCTCCGCTCTNNATTCGCGCGCCGCCGGGTCACTCCTCTCCCACGTNCACGCTGTNGGGTCCCTCCACNAAAAANATNCGCGCGCCGCCGCATCCCTCCGTCNCTGGGCNCGAAAAGCGACAAAAAAGGTCCNGATTNGCGCGTNNCCNGGTCCCTCCTCTCCCACNTTTTGGGCCGCTGGGTCCCTTCACAAAAAATTCGGGGCGCCGCCGGCATCCNTCCCTTGCNGGGCNNNAAAAANAAAAAAAAAAGGGTCCNAATTTTTTNGGNCGCCGGGG]

[+] EMBL BE229694             [AGAAATCGCCGGCTCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCGCCGGCGGGCTCCCTCCTCGACAACGACAAAAAANCGTGACGCCGCCGACTGCTCCCTCCGCTCCAGATTCGCGCGCCGCCGGNTCCCTCCTCTTCCACGTNCGCGCAGCCGGNTCCCTCCACAACGANATCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGGGGGCTCCCTCCTCGACNANAAAAAAAACCGCGANCCTCCGANGGGTCCCTCCGCTCTNNATTCGCGCGCCGCCGGGTCACTCCTCTCCCACGTNCACGCTGTNGGGTCCCTCCACNAAAAANATNCGCGCGCCGCCGCATCCCTCCGTCNCTGGGCNCGAAAAGCGACAAAAAAGGTCCNGATTNGCGCGTNNCCNGGTCCCTCCTCTCCCACNTTTTGGGCCGCTGGGTCCCTTCACAAAAAATTCGGGGCGCCGCCGGCATCCNTCCCTTGCNGGGCNNNAAAAANAAAAAAAAAAGGGTCCNAATTTTTTNGGNCGCCGGGG]




>consensus_3042#1
AGAAATCGCCGGCTCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCGCCG
GCGGGCTCCCTCCTCGACAACGACAAAAAANCGTGACGCCGCCGACTGCTCCCTCCGCTC
CAGATTCGCGCGCCGCCGGNTCCCTCCTCTTCCACGTNCGCGCAGCCGGNTCCCTCCACA
ACGANATCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGGGGGCTCCCTCCTCGACNANA
AAAAAAACCGCGANCCTCCGANGGGTCCCTCCGCTCTNNATTCGCGCGCCGCCGGGTCAC
TCCTCTCCCACGTNCACGCTGTNGGGTCCCTCCACNAAAAANATNCGCGCGCCGCCGCAT
CCCTCCGTCNCTGGGCNCGAAAAGCGACAAAAAAGGTCCNGATTNGCGCGTNNCCNGGTC
CCTCCTCTCCCACNTTTTGGGCCGCTGGGTCCCTTCACAAAAAATTCGGGGCGCCGCCGG
CATCCNTCCCTTGCNGGGCNNNAAAAANAAAAAAAAAAGGGTCCNAATTTTTTNGGNCGC
CGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3042#0      -AAAATCGCCCGGCTCCCTCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCAC 59
consensus_3042#1      AGAAATCGCC-GGCTCC-TCCTCTCCCACGTCCGCGCGCCGCCGCCTCCCTCCTCGCCGC 58
                        ******** ****** **************************************** *

consensus_3042#0      CGGCGGCCTCCCTCCTCGACAACGACGACGA-CCGTGACGCCGCCGACTGCTCCCTCCAT 118
consensus_3042#1      CGGCGGGCTCCCTCCTCGACAACGACAAAAAANCGTGACGCCGCCGACTGCTCCCTCCGC 118
                      ****** ******************* *  *  *************************  

consensus_3042#0      TCCAGATCCGCGCGCCGCCGGCTCCCTCCTCTTCCACGTCCGCGCAGCCGGCTCCCTCCA 178
consensus_3042#1      TCCAGATTCGCGCGCCGCCGGNTCCCTCCTCTTCCACGTNCGCGCAGCCGGNTCCCTCCA 178
                      ******* ************* ***************** *********** ********

consensus_3042#0      CAACGACGTCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGCGGCCTCCCTCCTCGACGA 238
consensus_3042#1      CAACGANATCCGTGCGCCGCCGCATCCCTCCTCGCCACCGGGGGGCTCCCTCCTCGACNA 238
                      ******  ********************************* ** ************* *

consensus_3042#0      TGACGACAACCGCGACGCCTCCGACGGCTCCCTCCGCTCCAGATCCGCGCGCCGCCGGCT 298
consensus_3042#1      NAAAAAAAACCGCGAN-CCTCCGANGGGTCCCTCCGCTCTNNATTCGCGCGCCGCCGGGT 297
                        *  * ********  ******* ** ***********   ** ************* *

consensus_3042#0      CACTCCTCTCCCACGTCCAGGCTGTCGGCTCCCTCCACGACGA-CGTCCGCGCGCTGCCG 357
consensus_3042#1      CACTCCTCTCCCACGTNCACGCTGTNGGGTCCCTCCACNAAAAANATNCGCGCGCCGCCG 357
                      **************** ** ***** ** ********* *  *   * ******* ****

consensus_3042#0      CATCCCTCCGTCGCTGGCCATGACGAGCGACGACGACGGCTCCAGATCCGCGCGTTGCCG 417
consensus_3042#1      CATCCCTCCGTCNCTGGGCNCGAAAAGCGACAAAAAAGG-TCCNGATTNGCGCGTNNCCN 416
                      ************ **** *  **  ****** *  * ** *** ***  ******  ** 

consensus_3042#0      GCTCCCTCCTCTCCCACGTCC-GCGCCACTGGCTCCCTTCACGACAACGTCCGCGCGCCG 476
consensus_3042#1      GGTCCCTCCTCTCCCACNTTTTGGGCCGCTGGGTCCCTTCACAAAAAATTCGGGGCGCCG 476
                      * *************** *   * *** **** ********* * **  ** * ******

consensus_3042#0      CCG-CATCCCTCCGCTGCCGGCCACGACGAGCGACGACGAC--GGCTCCAGATCCGTGCG 533
consensus_3042#1      CCGGCATCCNTCCCTTGCNGGGCNNNAAAAANAAAAAAAAAAGGGTCCNAATTTTTTNGG 536
                      *** ***** ***  *** ** *   *  *   *  *  *   **  * *  *   *  *

consensus_3042#0      CCGCCGGCTTCCCTCCTCGCCGCCTCTACCAGCCGCTTCATCTCCTCGCCCCCTCCGCCG 593
consensus_3042#1      NCGCCGGGG--------------------------------------------------- 545
                       ******                                                     

consensus_3042#0      CCGCGCCGACAACGACGATGACGGTGACGATGACGACGACGACGGCGCCGACGACGACGG 653
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      GTGGAGGGGAGCCCTGGCCGGCGGTGCCCCGTGGTTTTTTTTATTTTCCTGGGATGATTT 713
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      TCGCTGGCGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAG 773
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      CGGCGATCCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTT 833
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      CTAGTAGTGATCCATTCCATCTGATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATAT 893
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      ATCGGGTCTA 903
consensus_3042#1      ----------