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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1925 fasta sequence
[AGACAGGCAGCAGCTGACGCGCGCGCGGGGGCGAGGGCAGGAACCCGTCGCGATTGGGCGGACGACGAACCGGTCGCGCGCGGGCGCGTTCGGGAATCGTGGTGGATCTGACGCCACCACCGCCGCCGCCGCCGCCGCTCGGTTGCTCCTCTCCTCGCCGCGCCGTCGCGTGCGTCGCCGTCGCCTCCTTGCCCCTAGCGGGCGGCCGGGCAATTCCCCGCGCGCCTGCTCGATCTGCCTCGGTGGTCAATGCGGGCGAGGAGATGAGCGGCGCCGAGGAGGAGGAGGAGGAGGAGGAGGTGTCCTATGAGGCGCGGGACCGCGTGCTCTCCTCCTCCTCCTGCTCCTCCACCTCGGCCTCGGACGACGACGACCACCCGCGGCGAGGTCGGGATGCGGCGGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGCTCGACGTGTGGACGTCGGAGCCAGCGCCCGTGCAGGAACGACGCCGGAGGCTTCTCCAGATGATGGGGCTCTCCGGTGACCCCTCTCTGGCGCGCCTCGAGATGGGTCGATCGGCCTCCTACGACGGGCCCATCCGGCCGGAGACGGTGTCGCCCATCTCCCGATCCAGATCGGATGGCAGCGTGCCGGCCTCCGCCACCAAGCCCCCGCTCGCGGCCCGGTCGCGCCAAACATCGTCCGACTCCTCCGAGGCCACGCCAGGGGGAGATGACGCGGACCCCAGGTGCCTAATCCGAAACCTCGACGACGGCAGCGAGTTCGTGGTGAAGGAGGAGTCCGCGCTCCGCGAGGTGGGCACGGGGAGGCAGCTCACCATGGAGGAGTTCGACCTCTGCGTCGGTCGCTCCCCCATCGTCCAGGAGCTCATGCGCCGCCAGAACGTGGCAAGCTCCGGTTCGAGCAACGGAGCGTCCGCTCTCATCCAGAGGTCCAGCTCTGATTCAAGCAACGGCGCGACGCGCCACAGGCGGCGCGGCAGCTGGCTCCGGAGCATCCGCAACGTCGCTGGCTCCATGGTGGTCGGCTCCCGCGACCGCCGAAGCAGCGACGAGAAGGACACCTCCTCGGAAAAGGGAGGGCGTCGGTCCAGCTCAGCCACAGACGACAGCCAGGAAAGTGCCAGCGCCGTGCGCCGTGGCCCGGAGCGTGTCAAGGTACGGCAGTACGGGAAGACATGCAAGGAGCTCAGTGGGCTGTTCATGAACCAGGATATACAGGCGCACAACGGGTCCATCTGGAGCATAAAGTTTAGTCACGACGGGCGGTACCTCGCGAGTGCTGGGGAGGATTGCGTGATCCATGTCTGGGAGGTGTCGGAGCTTGAGAGGAAACGGGAGGGAAATGGGGTGTGCAATCAACTTGTTGCCGTCGTGTGCAATGGTTCGCCGGAGCCGATATTGGCATTGGCAAGTGTTGATGGAAGCTGTTGGGAGAAGAAGCATCGGGCTAGAATCTTGGAAACTCGGAAGTCTGCGAGCTCTGACCGGTTGATGTTTCCAGAGCATGTGTTCGCACTATCAGAAAAACCGGTCAAAACTTTTGAGGGGCATTCGGAGGATGTGCTTGATCTCTGCTGGTCTAAATCTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAATGGTCACTGCTGCTTGCTATACACCTGATGGACAGAGAGCATTAGTCGGTTCCCACAAGGGCAGCTGTCATATTTATGATACATCTGATAATAAGCTTCTCCAAAAGAAACAGATTGACTTGCAAAATAAGAAAAGGAAGTCCAATCAGAAGAAAATCACAGGGTTTCAGTTTCTCCCAGGAAGTTCTTCAAAGGTGCTCATCACATCTGCAGATTCACGAA]
[+] EMBL AK099627 [AGACAGGCAGCAGCTGACGCGCGCGCGGGGGCGAGGGCAGGAACCCGTCGCGATTGGGCGGACGACGAACCGGTCGCGCGCGGGCGCGTTCGGGAATCGTGGTGGATCTGACGCCACCACCGCCGCCGCCGCCGCCGCTCGGTTGCTCCTCTCCTCGCCGCGCCGTCGCGTGCGTCGCCGTCGCCTCCTTGCCCCTAGCGGGCGGCCGGGCAATTCCCCGCGCGCCTGCTCGATCTGCCTCGGTGGTCAATGCGGGCGAGGAGATGAGCGGCGCCGAGGAGGAGGAGGAGGAGGAGGAGGTGTCCTATGAGGCGCGGGACCGCGTGCTCTCCTCCTCCTCCTGCTCCTCCACCTCGGCCTCGGACGACGACGACCACCCGCGGCGAGGTCGGGATGCGGCGGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGCTCGACGTGTGGACGTCGGAGCCAGCGCCCGTGCAGGAACGACGCCGGAGGCTTCTCCAGATGATGGGGCTCTCCGGTGACCCCTCTCTGGCGCGCCTCGAGATGGGTCGATCGGCCTCCTACGACGGGCCCATCCGGCCGGAGACGGTGTCGCCCATCTCCCGATCCAGATCGGATGGCAGCGTGCCGGCCTCCGCCACCAAGCCCCCGCTCGCGGCCCGGTCGCGCCAAACATCGTCCGACTCCTCCGAGGCCACGCCAGGGGGAGATGACGCGGACCCCAGGTGCCTAATCCGAAACCTCGACGACGGCAGCGAGTTCGTGGTGAAGGAGGAGTCCGCGCTCCGCGAGGTGGGCACGGGGAGGCAGCTCACCATGGAGGAGTTCGACCTCTGCGTCGGTCGCTCCCCCATCGTCCAGGAGCTCATGCGCCGCCAGAACGTGGCAAGCTCCGGTTCGAGCAACGGAGCGTCCGCTCTCATCCAGAGGTCCAGCTCTGATTCAAGCAACGGCGCGACGCGCCACAGGCGGCGCGGCAGCTGGCTCCGGAGCATCCGCAACGTCGCTGGCTCCATGGTGGTCGGCTCCCGCGACCGCCGAAGCAGCGACGAGAAGGACACCTCCTCGGAAAAGGGAGGGCGTCGGTCCAGCTCAGCCACAGACGACAGCCAGGAAAGTGCCAGCGCCGTGCGCCGTGGCCCGGAGCGTGTCAAGGTACGGCAGTACGGGAAGACATGCAAGGAGCTCAGTGGGCTGTTCATGAACCAGGATATACAGGCGCACAACGGGTCCATCTGGAGCATAAAGTTTAGTCACGACGGGCGGTACCTCGCGAGTGCTGGGGAGGATTGCGTGATCCATGTCTGGGAGGTGTCGGAGCTTGAGAGGAAACGGGAGGGAAATGGGGTGTGCAATCAACTTGTTGCCGTCGTGTGCAATGGTTCGCCGGAGCCGATATTGGCATTGGCAAGTGTTGATGGAAGCTGTTGGGAGAAGAAGCATCGGGCTAGAATCTTGGAAACTCGGAAGTCTGCGAGCTCTGACCGGTTGATGTTTCCAGAGCATGTGTTCGCACTATCAGAAAAACCGGTCAAAACTTTTGAGGGGCATTCGGAGGATGTGCTTGATCTCTGCTGGTCTAAATCTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAATGGTCACTGCTGCTTGCTATACACCTGATGGACAGAGAGCATTAGTCGGTTCCCACAAGGGCAGCTGTCATATTTATGATACATCTGATAATAAGCTTCTCCAAAAGAAACAGATTGACTTGCAAAATAAGAAAAGGAAGTCCAATCAGAAGAAAATCACAGGGTTTCAGTTTCTCCCAGGAAGTTCTTCAAAGGTGCTCATCACATCTGCAGATTCACGAA]
consensusID : consensus_3047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence
[AACCCCCCCCCNTTTAGTAGTCCGGNAAGCATGCTCATGGAAACCGAGAAAAGTAGAAGATGGGAAGAGGGAGTATTGANCNCNCCCCAGAGGGTAGTTACCTTTTGCAGCTAGTTATACATATATGGTTTCTATATACCTTATGTGGCTAGTTACATATCCAGACTTCACATTTGTCAACANCAGTTACATGCTTCCAGCAATGCATCCCCAAATTATGATTGCTACAATTCCATGAATCTTGTAGTGGTATTCTTATGGTTTTGTAGCTATTCCAGATTTTAATTTCTTTCTTTTTCAAACATCGTGCAGTACTTACTTTCATCTTCAATGGATAAAACAGTGAAGTTATGGCATATGTCAAGAACTTCATGTTTGAAAACATTTTCACATAGTGACTATGGTAAGATCTCGAGTTGACATTAGCAGTTTTGCGTGTTCTCTCTCTCCCCCAAGCACATATGACGTTTCTCACTCTGCGAACATACTTTAAATTTTCCTTTGCTGTTTTGCGTTTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAANGGTCACTGCTGCTTGCTATACACCTGATGGACAGGTTTCTACACTATATACTGATGTATGTGACCGAAAAGGTCTTTTTGTATGTA]
[-] EMBL CA765140 [AACCCCCCCCCNTTTAGTAGTCCGGNAAGCATGCTCATGGAAACCGAGAAAAGTAGAAGATGGGAAGAGGGAGTATTGANCNCNCCCCAGAGGGTAGTTACCTTTTGCAGCTAGTTATACATATATGGTTTCTATATACCTTATGTGGCTAGTTACATATCCAGACTTCACATTTGTCAACANCAGTTACATGCTTCCAGCAATGCATCCCCAAATTATGATTGCTACAATTCCATGAATCTTGTAGTGGTATTCTTATGGTTTTGTAGCTATTCCAGATTTTAATTTCTTTCTTTTTCAAACATCGTGCAGTACTTACTTTCATCTTCAATGGATAAAACAGTGAAGTTATGGCATATGTCAAGAACTTCATGTTTGAAAACATTTTCACATAGTGACTATGGTAAGATCTCGAGTTGACATTAGCAGTTTTGCGTGTTCTCTCTCTCCCCCAAGCACATATGACGTTTCTCACTCTGCGAACATACTTTAAATTTTCCTTTGCTGTTTTGCGTTTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAANGGTCACTGCTGCTTGCTATACACCTGATGGACAGGTTTCTACACTATATACTGATGTATGTGACCGAAAAGGTCTTTTTGTATGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3047#0 AGACAGGCAGCAGCTGACGCGCGCGCGGGGGCGAGGGCAGGAACCCGTCGCGATTGGGCG 60
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 GACGACGAACCGGTCGCGCGCGGGCGCGTTCGGGAATCGTGGTGGATCTGACGCCACCAC 120
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 CGCCGCCGCCGCCGCCGCTCGGTTGCTCCTCTCCTCGCCGCGCCGTCGCGTGCGTCGCCG 180
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 TCGCCTCCTTGCCCCTAGCGGGCGGCCGGGCAATTCCCCGCGCGCCTGCTCGATCTGCCT 240
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 CGGTGGTCAATGCGGGCGAGGAGATGAGCGGCGCCGAGGAGGAGGAGGAGGAGGAGGAGG 300
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 TGTCCTATGAGGCGCGGGACCGCGTGCTCTCCTCCTCCTCCTGCTCCTCCACCTCGGCCT 360
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 CGGACGACGACGACCACCCGCGGCGAGGTCGGGATGCGGCGGCTGCTGCTGCTGCGGCGG 420
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 CGGCGGCGGCGCTCGACGTGTGGACGTCGGAGCCAGCGCCCGTGCAGGAACGACGCCGGA 480
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 GGCTTCTCCAGATGATGGGGCTCTCCGGTGACCCCTCTCTGGCGCGCCTCGAGATGGGTC 540
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 GATCGGCCTCCTACGACGGGCCCATCCGGCCGGAGACGGTGTCGCCCATCTCCCGATCCA 600
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 GATCGGATGGCAGCGTGCCGGCCTCCGCCACCAAGCCCCCGCTCGCGGCCCGGTCGCGCC 660
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 AAACATCGTCCGACTCCTCCGAGGCCACGCCAGGGGGAGATGACGCGGACCCCAGGTGCC 720
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 TAATCCGAAACCTCGACGACGGCAGCGAGTTCGTGGTGAAGGAGGAGTCCGCGCTCCGCG 780
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 AGGTGGGCACGGGGAGGCAGCTCACCATGGAGGAGTTCGACCTCTGCGTCGGTCGCTCCC 840
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 CCATCGTCCAGGAGCTCATGCGCCGCCAGAACGTGGCAAGCTCCGGTTCGAGCAACGGAG 900
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 CGTCCGCTCTCATCCAGAGGTCCAGCTCTGATTCAAGCAACGGCGCGACGCGCCACAGGC 960
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 GGCGCGGCAGCTGGCTCCGGAGCATCCGCAACGTCGCTGGCTCCATGGTGGTCGGCTCCC 1020
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 GCGACCGCCGAAGCAGCGACGAGAAGGACACCTCCTCGGAAAAGGGAGGGCGTCGGTCCA 1080
consensus_3047#1 -----------------------AACCCCCCCCCNTTTAGTAGTCCGGNAAGCATGCTCA 37
** * ** * * * * * * **
consensus_3047#0 GCTCAGCCACAGACGACAGCCA--GGAAAGTGCCAGCGCCGTGCGCCGTGGCCCGGAGCG 1138
consensus_3047#1 TGGAAACCGAGAAAAGTAGAAGATGGGAAGAGGGAGTATTG---ANCNCNCCCCAGAGGG 94
* ** * ** ** *** * ** * * *** *** *
consensus_3047#0 TGTCAAGGTACGGCAGTACGGGAAGACATGCAAGGAGCTCAGTGGGCTGTTCATGAACCA 1198
consensus_3047#1 TAGTTACCTTTTGCAGC-TAGTTATACATATATGGT-TTCTATATAC--CTTATGTGGCT 150
* * * **** * * **** * ** ** * * * *** *
consensus_3047#0 GGATATACAGGCGCACAACGGGTCCATCTGGAGCATAAAGTTTAGTCACGACGGGCGGTA 1258
consensus_3047#1 AGTTACATATCCAGACTTCACATTTGTCAACANCA-GTTACATGCTTCCAGCAATGCATC 209
* ** * * * ** * * ** * ** * * * * *
consensus_3047#0 CCTCGCGAGTGCTGGGGAGGATTGCGTGATCCATGTCTGGGAGGTGTCGGAGCTTGAGAG 1318
consensus_3047#1 CCCAAATTATGATTGCTACAATTCCATGAATCTTGTAGTGGTATTCTTATGGTTTTGTAG 269
** ** * * * *** * *** * *** ** * * * ** **
consensus_3047#0 GAAACGGGAGGGAAATGGGGTGTGCAATCAACTTGTTGCCGTCGT-GTGCAATGGTTCGC 1377
consensus_3047#1 CTATTC---------CAGATTTTAATTTCTTTCTTTTTCAAACATCGTGCAGTACTTACT 320
* * * * ** * ** * * * ***** * **
consensus_3047#0 CGGAGCCGATATTGGCATTGGCAAGTGTTGATGGAAGCTGTTGGGAGAAGAAGCATCGGG 1437
consensus_3047#1 TTCATCTTCAATGGATAAAACAGTGAAGTTATGGCATATGTCAAGA-ACTTCATGTTTGA 379
* * ** * * * * **** * *** ** * * *
consensus_3047#0 CTAGAATCTTGGAAACTCGGAAGTCTGCGAGCTCTGACCGGTTGATGTTTCCAGA---GC 1494
consensus_3047#1 AAACATTTTCACATAGT--GACTATGGTAAGATCT--CGAGTTGACATTAGCAGTTTTGC 435
* * * * * * * ** * ** *** * ***** ** *** **
consensus_3047#0 ATGTGTTCGCACTATCAGAAAAACCGGTCAAAACTTTTGAGGGGCATTCGGAGGATGTGC 1554
consensus_3047#1 GTGTTCTCTCTCTCCCCCAAGCACATATGACGTTTCTCACTCTGCGAACATACTTTAAAT 495
*** ** * ** * ** ** * * * * ** * * *
consensus_3047#0 TTGATCTCTGCTGGTCTAAATCTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAG 1614
consensus_3047#1 TTT-CCTTTGCTGTTTTGCGTTTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAG 554
** ** ***** * * * **************************************
consensus_3047#0 ATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGA 1674
consensus_3047#1 ATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGA 614
************************************************************
consensus_3047#0 AATTGTTGATTGGAATGATCTGCATGAAATGGTCACTGCTGCTTGCTATACACCTGATGG 1734
consensus_3047#1 AATTGTTGATTGGAATGATCTGCATGAAANGGTCACTGCTGCTTGCTATACACCTGATGG 674
***************************** ******************************
consensus_3047#0 ACAGAGAGCATTAGTCGGTTCCCACAAGGGCAGCTGTCATATTTATGATACATCTGATAA 1794
consensus_3047#1 ACAGGTTTCTACACTATATACTGATGTATGTGACCGAAAAGGTCTTTTTGTATGTA---- 730
**** * * * * * * * * * * * * * ** *
consensus_3047#0 TAAGCTTCTCCAAAAGAAACAGATTGACTTGCAAAATAAGAAAAGGAAGTCCAATCAGAA 1854
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 GAAAATCACAGGGTTTCAGTTTCTCCCAGGAAGTTCTTCAAAGGTGCTCATCACATCTGC 1914
consensus_3047#1 ------------------------------------------------------------
consensus_3047#0 AGATTCACGAA 1925
consensus_3047#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||