These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1731 fasta sequence [TCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACACTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTCTGATGAAGAACACGATCGATCACGGTGAGCTTGTCGCTGCGAGCGAGATTGCGAGTCAAGTGGTGGCGCGGCGCGGCGCACTTACGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGGCATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAATCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAGCTACCCGACACTGTCCGAATTTCTTGCTTGCTTAATATCATAATAATATAATTGGAGAAATACAAAAGTTTGATCTAAATAAATAGATAAATAAAGGTGGGGAAAATTCCGGGACATTTCACATGGTTTTTCATCCTCTGCCATCACATTTCTCTGGTTGCTTGCCGTCTGCTGCTGTACAGGTTTATGAAAGCTTT] [+] EMBL AK107339 [TCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACACTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTCTGATGAAGAACACGATCGATCACGGTGAGCTTGTCGCTGCGAGCGAGATTGCGAGTCAAGTGGTGGCGCGGCGCGGCGCACTTACGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGGCATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAATCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAGCTACCCGACACTGTCCGAATTTCTTGCTTGCTTAATATCATAATAATATAATTGGAGAAATACAAAAGTTTGATCTAAATAAATAGATAAATAAAGGTGGGGAAAATTCCGGGACATTTCACATGGTTTTTCATCCTCTGCCATCACATTTCTCTGGTTGCTTGCCGTCTGCTGCTGTACAGGTTTATGAAAGCTTT] consensusID : consensus_3056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence [GTCAATCATACTTGTCATGATATTCATTTTTTTTTCAATCCTAAAAACTTCCATACTCTTAATATCCTTGACAAGACTATTTGTCAATCATACTTCTTTCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACGCTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGACATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAAGCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAG] [-] EMBL AK110841 [GTCAATCATACTTGTCATGATATTCATTTTTTTTTCAATCCTAAAAACTTCCATACTCTTAATATCCTTGACAAGACTATTTGTCAATCATACTTCTTTCATGATATTCATTTTGTTTCAATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATTGATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGACATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAATCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGGCGAGCCCCTCCCTGACGCCGGAGCTGTACGCTCTCTTCAGTGACCTACTGTACTTCGCCACCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATGGCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGATGGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGACGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGTGGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAGGAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAGCACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAAGGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCGCTCGCCGGTGATCATCCAGCACGCCACCTGGATGAACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACGCGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGCACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATCAGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCGCCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGACGACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGACATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCAAACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAAGCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGCACCTTTGCTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3056#0 ------------------------------------------------------------ consensus_3056#1 GTCAATCATACTTGTCATGATATTCATTTTTTTTTCAATCCTAAAAACTTCCATACTCTT 60 consensus_3056#0 --------------------------------------TCATGATATTCATTTTGTTTCA 22 consensus_3056#1 AATATCCTTGACAAGACTATTTGTCAATCATACTTCTTTCATGATATTCATTTTGTTTCA 120 ********************** consensus_3056#0 ATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATT 82 consensus_3056#1 ATACTAAAAACTTTCATGCTCTTAAATTTGCTACAAACTTAGTATTCTTTCTGAAGAATT 180 ************************************************************ consensus_3056#0 GATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGA 142 consensus_3056#1 GATCAAGAAGCTCGCGGGGCGGCGAAACTTACAGCGAGCCGGTGAGCACGGCGAAGATGA 240 ************************************************************ consensus_3056#0 CATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAA 202 consensus_3056#1 CATTCATGACCTGAGCTCCGGTGTATCCCTTCTCCAGAATCAGCTTGGCACCGTACCAAA 300 ************************************************************ consensus_3056#0 TCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGG 262 consensus_3056#1 TCCCCAATGAGTAGCCACAGAAGAGGAGCACCATCACCGTGCCCATGCCCACGCCGGCGG 360 ************************************************************ consensus_3056#0 CGAGCCCCTCCCTGACGCCGGAGCTGTACACTCTCTTCAGTGACCTACTGTACTTCGCCA 322 consensus_3056#1 CGAGCCCCTCCCTGACGCCGGAGCTGTACGCTCTCTTCAGTGACCTACTGTACTTCGCCA 420 ***************************** ****************************** consensus_3056#0 CCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATG 382 consensus_3056#1 CCGCCTGCTTCTCGCCGGTGAACGACGCAACCTGTGTTGAGCCGGGTGTTCAGGGCCATG 480 ************************************************************ consensus_3056#0 GCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGAT 442 consensus_3056#1 GCGGCGCGGAGAAATGGATGGTAGCTGAGGTGTTCGACGGAATGTTTTTACTGTTCTGAT 540 ************************************************************ consensus_3056#0 GGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGA 502 consensus_3056#1 GGAGCCGATGGTCTGCTCGACGACGACGGAGGCGTCGGCGTAGGCGGCCTGGCCGAGCGA 600 ************************************************************ consensus_3056#0 CGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGT 562 consensus_3056#1 CGCCATCCTGGCGACGACATTGGACATGACGGCGCCGGAGAGGACGAGCGGCGGGATGGT 660 ************************************************************ consensus_3056#0 GGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAG 622 consensus_3056#1 GGCGAGCATGACGAGGGTGAGGAGCCACCCCTGCGCGAACGCCACGCCGAAGCCGCCCAG 720 ************************************************************ consensus_3056#0 GAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAG 682 consensus_3056#1 GAACGTGACGAGGAGCTGGACGAACTTGCCCACCTTCTCCCCCATGGCGTCCTGGATCAG 780 ************************************************************ consensus_3056#0 CACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAA 742 consensus_3056#1 CACCGTGTCGCCGGACATCCTGCCCACCACCTCGCCGGTGTTGGTGTGCTTGTCGAAGAA 840 ************************************************************ consensus_3056#0 GGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCG 802 consensus_3056#1 GGCGACCTCCTGCCGGAGTATCGTCCTCAGGTACAGACTCCGTATCCGCGCCGCCTGCCG 900 ************************************************************ consensus_3056#0 CTCGCCGGTGATCATCCAGCACGCCACCTCTGATGAAGAACACGATCGATCACGGTGAGC 862 consensus_3056#1 CTCGCCGGTGATCATCCAGCACGCCACCT------------------------------- 929 ***************************** consensus_3056#0 TTGTCGCTGCGAGCGAGATTGCGAGTCAAGTGGTGGCGCGGCGCGGCGCACTTACGGATG 922 consensus_3056#1 -------------------------------------------------------GGATG 934 ***** consensus_3056#0 AACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACG 982 consensus_3056#1 AACGACGCGGCGGCCGAGGCGACGGCGAGGTAGATGAACTGGAGCGACACCTCGGAGACG 994 ************************************************************ consensus_3056#0 CGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGC 1042 consensus_3056#1 CGCGCCACGACGTCGCCGCCCGCGGCGCCGCCGAAGGCGTCGATGAGGCCGCCGAACAGC 1054 ************************************************************ consensus_3056#0 ACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATC 1102 consensus_3056#1 ACGGTCATGAACGGCAGCGCGGCGCCGTTCGCCACCGCGCCCAGCGTCCCGAGCAGCATC 1114 ************************************************************ consensus_3056#0 AGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCG 1162 consensus_3056#1 AGCGCCGCGTCCGTGCCGTCCGCGAACGCGAACAGCCGGTGGAACGCCACGCTCCCCCCG 1174 ************************************************************ consensus_3056#0 CCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGAC 1222 consensus_3056#1 CCACCATTCTTCCCCGTCGTTCCAGCCACCGCCTCGCCGCCGCCGCCGCCGCCGGACGAC 1234 ************************************************************ consensus_3056#0 GACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGGCATGCTCTGCAAACCCAAG 1282 consensus_3056#1 GACGACGACGCATTCACTCCGAACGCCCTGCTCGACTCCGACATGCTCTGCAAACCCAAG 1294 **************************************** ******************* consensus_3056#0 ATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCA 1342 consensus_3056#1 ATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCA 1354 ************************************************************ consensus_3056#0 AACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATC 1402 consensus_3056#1 AACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATC 1414 ************************************************************ consensus_3056#0 AAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATT 1462 consensus_3056#1 AAAGAACAACGAGGTGGATCAATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATT 1474 ************************************************************ consensus_3056#0 GCGATTTGCGAGGAGAATCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGC 1522 consensus_3056#1 GCGATTTGCGAGGAGAAGCTAAAGAGAAAGGTGCAGAGTTAAAAAGCAAAGCACACTGGC 1534 ***************** ****************************************** consensus_3056#0 ACCTTTGCTCAGCTACCCGACACTGTCCGAATTTCTTGCTTGCTTAATATCATAATAATA 1582 consensus_3056#1 ACCTTTGCTCAG------------------------------------------------ 1546 ************ consensus_3056#0 TAATTGGAGAAATACAAAAGTTTGATCTAAATAAATAGATAAATAAAGGTGGGGAAAATT 1642 consensus_3056#1 ------------------------------------------------------------ consensus_3056#0 CCGGGACATTTCACATGGTTTTTCATCCTCTGCCATCACATTTCTCTGGTTGCTTGCCGT 1702 consensus_3056#1 ------------------------------------------------------------ consensus_3056#0 CTGCTGCTGTACAGGTTTATGAAAGCTTT 1731 consensus_3056#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||