cluster # 3063

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Oryza sativa
cluster # 3063 cluster # 3063 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3063#0 length = 527 sequences # 1

consensus_3063#1 length = 270 sequences # 1

consensusID : consensus_3063#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [AACGGTGCGGGGAGGGCGCCAAGAAGGTGAAGAGGAGGAGGAGCAAGAGNCGGGAGGAGAGCGCCGAGGGGAGCACGTTGACGACGCTGGCGGCGGTGGTGCCCGTTCCTGCCGCTGACAGCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGACGTCGACGGCGCCGGAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGGTGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTTCCGGCGCCACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAGCCTGCTTTTGACTGGAAGTTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCTACTCTTTTGACATCAGTTTGATGAAAACTAGCTTGCTTGGAACTAAAAAA]

[+] EMBL AU082881             [AACGGTGCGGGGAGGGCGCCAAGAAGGTGAAGAGGAGGAGGAGCAAGAGNCGGGAGGAGAGCGCCGAGGGGAGCACGTTGACGACGCTGGCGGCGGTGGTGCCCGTTCCTGCCGCTGACAGCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGACGTCGACGGCGCCGGAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGGTGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTTCCGGCGCCACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAGCCTGCTTTTGACTGGAAGTTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCTACTCTTTTGACATCAGTTTGATGAAAACTAGCTTGCTTGGAACTAAAAAA]




>consensus_3063#0
AACGGTGCGGGGAGGGCGCCAAGAAGGTGAAGAGGAGGAGGAGCAAGAGNCGGGAGGAGA
GCGCCGAGGGGAGCACGTTGACGACGCTGGCGGCGGTGGTGCCCGTTCCTGCCGCTGACA
GCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGA
CGTCGACGGCGCCGGAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGG
TGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTTCCGGCGCCACCTCAGGGTTGACTCCT
TCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAGCCTGCTTTTGACTGGAAG
TTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTG
CTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCTACT
CTTTTGACATCAGTTTGATGAAAACTAGCTTGCTTGGAACTAAAAAA

consensusID : consensus_3063#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [GAAGCGGACGGGAATGCGGCNNGAGGAGGTGAACAAGCNGGCGAGGAGTTCTCTCGGCGTTCCGNACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGNCNNNNNNNNNAGAATCGAAAGTCCCTGCTTTTGACTGGAAGTTGCATTGACCGAGCAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTACTTACTCTACTCTTTTGACAT]

[+] EMBL D42643               [GAAGCGGACGGGAATGCGGCNNGAGGAGGTGAACAAGCNGGCGAGGAGTTCTCTCGGCGTTCCGNACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGNCNNNNNNNNNAGAATCGAAAGTCCCTGCTTTTGACTGGAAGTTGCATTGACCGAGCAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTACTTACTCTACTCTTTTGACAT]




>consensus_3063#1
GAAGCGGACGGGAATGCGGCNNGAGGAGGTGAACAAGCNGGCGAGGAGTTCTCTCGGCGT
TCCGNACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGNCNNNNNNNNNAGAATCGAA
AGTCCCTGCTTTTGACTGGAAGTTGCATTGACCGAGCAAGTGTGCTTCTTGTTTCTGCAC
ATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGC
TGAGATGTACTTACTCTACTCTTTTGACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3063#0      AACGGTGCGGGGAGGGCGCCAAGAAGGTGAAGAGGAGGAGGAGCAAGAGNCGGGAGGAGA 60
consensus_3063#1      ------------------------------------------------------------
                                                                                  

consensus_3063#0      GCGCCGAGGGGAGCACGTTGACGACGCTGGCGGCGGTGGTGCCCGTTCCTGCCGCTGACA 120
consensus_3063#1      ------------------------------------------------------------
                                                                                  

consensus_3063#0      GCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGA 180
consensus_3063#1      ------------------------------------------------------------
                                                                                  

consensus_3063#0      CGTCGACGGCGCCGGAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGG 240
consensus_3063#1      -----------------------------GAAGCGGACGGGAATGCGGCN--NGAGGAGG 29
                                                   ********************    *******

consensus_3063#0      TGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTTCCGGCGCCACCTCAGGGTTGACTCCT 300
consensus_3063#1      TGAACAAGCNGGCG-AGGAGTTC-TCTCGGCGTTCCGN----ACCTCAGGGTTGACTCCT 83
                      ********* **** ******** *************     ******************

consensus_3063#0      TCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAG---CCTGCTTTTGACTGG 357
consensus_3063#1      TCTCGTCGGGAAGCCG----GNCNNNNNNNNNAGAATCGAAAGTCCCTGCTTTTGACTGG 139
                      ****************    * *         *********    ***************

consensus_3063#0      AAGTTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTC 417
consensus_3063#1      AAGTTGCATTG-ACCGAGCAA-GTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTC 197
                      *********** ********* **************************************

consensus_3063#0      TTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCT 477
consensus_3063#1      TTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTACTTACTCT 257
                      **************************************************** *******

consensus_3063#0      ACTCTTTTGACATCAGTTTGATGAAAACTAGCTTGCTTGGAACTAAAAAA 527
consensus_3063#1      ACTCTTTTGACAT------------------------------------- 270
                      *************