These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [AACGGTGCGGGGAGGGCGCCAAGAAGGTGAAGAGGAGGAGGAGCAAGAGNCGGGAGGAGAGCGCCGAGGGGAGCACGTTGACGACGCTGGCGGCGGTGGTGCCCGTTCCTGCCGCTGACAGCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGACGTCGACGGCGCCGGAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGGTGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTTCCGGCGCCACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAGCCTGCTTTTGACTGGAAGTTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCTACTCTTTTGACATCAGTTTGATGAAAACTAGCTTGCTTGGAACTAAAAAA] [+] EMBL AU082881 [AACGGTGCGGGGAGGGCGCCAAGAAGGTGAAGAGGAGGAGGAGCAAGAGNCGGGAGGAGAGCGCCGAGGGGAGCACGTTGACGACGCTGGCGGCGGTGGTGCCCGTTCCTGCCGCTGACAGCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGACGTCGACGGCGCCGGAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGGTGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTTCCGGCGCCACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAGCCTGCTTTTGACTGGAAGTTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCTACTCTTTTGACATCAGTTTGATGAAAACTAGCTTGCTTGGAACTAAAAAA] consensusID : consensus_3063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GAAGCGGACGGGAATGCGGCNNGAGGAGGTGAACAAGCNGGCGAGGAGTTCTCTCGGCGTTCCGNACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGNCNNNNNNNNNAGAATCGAAAGTCCCTGCTTTTGACTGGAAGTTGCATTGACCGAGCAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTACTTACTCTACTCTTTTGACAT] [+] EMBL D42643 [GAAGCGGACGGGAATGCGGCNNGAGGAGGTGAACAAGCNGGCGAGGAGTTCTCTCGGCGTTCCGNACCTCAGGGTTGACTCCTTCTCGTCGGGAAGCCGGNCNNNNNNNNNAGAATCGAAAGTCCCTGCTTTTGACTGGAAGTTGCATTGACCGAGCAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTCTTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTACTTACTCTACTCTTTTGACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3063#0 AACGGTGCGGGGAGGGCGCCAAGAAGGTGAAGAGGAGGAGGAGCAAGAGNCGGGAGGAGA 60 consensus_3063#1 ------------------------------------------------------------ consensus_3063#0 GCGCCGAGGGGAGCACGTTGACGACGCTGGCGGCGGTGGTGCCCGTTCCTGCCGCTGACA 120 consensus_3063#1 ------------------------------------------------------------ consensus_3063#0 GCTGCTGCATGGCGCTGGCGGTGGTGGACGACGGGGCGGATCAGACGCTGCCGCCGACGA 180 consensus_3063#1 ------------------------------------------------------------ consensus_3063#0 CGTCGACGGCGCCGGAGACGCAGCAGGAGGAAGCGGACGGGAATGCGGCGGCGGAGGAGG 240 consensus_3063#1 -----------------------------GAAGCGGACGGGAATGCGGCN--NGAGGAGG 29 ******************** ******* consensus_3063#0 TGAACAAGCGGGCGGAGGAGTTCATCTCGGCGTTCCGGCGCCACCTCAGGGTTGACTCCT 300 consensus_3063#1 TGAACAAGCNGGCG-AGGAGTTC-TCTCGGCGTTCCGN----ACCTCAGGGTTGACTCCT 83 ********* **** ******** ************* ****************** consensus_3063#0 TCTCGTCGGGAAGCCGGCGAGCCGGCGGCGCCAGAATCGAAG---CCTGCTTTTGACTGG 357 consensus_3063#1 TCTCGTCGGGAAGCCG----GNCNNNNNNNNNAGAATCGAAAGTCCCTGCTTTTGACTGG 139 **************** * * ********* *************** consensus_3063#0 AAGTTGCATTGCACCGAGCAAAGTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTC 417 consensus_3063#1 AAGTTGCATTG-ACCGAGCAA-GTGTGCTTCTTGTTTCTGCACATTTTTCTTTCAGTCTC 197 *********** ********* ************************************** consensus_3063#0 TTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTAGTTACTCT 477 consensus_3063#1 TTGCTGCTTTTTTTTTATTATTATTATTTTTACCTTTGGAAGCTGAGATGTACTTACTCT 257 **************************************************** ******* consensus_3063#0 ACTCTTTTGACATCAGTTTGATGAAAACTAGCTTGCTTGGAACTAAAAAA 527 consensus_3063#1 ACTCTTTTGACAT------------------------------------- 270 ************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||