cluster # 3073

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Oryza sativa
cluster # 3073 cluster # 3073 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3073#0 length = 683 sequences # 1

consensus_3073#1 length = 522 sequences # 1

consensusID : consensus_3073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTCAAAAAAAATTAGAGTATTAGATCGAAATTTCTAAAGAAGGGGCAGGATAAAACAGGGAACCTAAAAACAACTCAAATTCAAAACAAAGGTCCAGTAAACAATGCAAGAAAGAATTTTACAAGAGACCATCAAAGAGTATATATGCACTTCCCTTGCACTATCAGGGGGCTTGACCGCTCGATCTGGGGGGGGGGGCTATCGCACAACGGTTGGGGAAAGGATGACAACTTCAGTTGCAAACGGGGGCACCCTCAGCCTCCACTGTTTATGCCCAGAATTCTCAAATCTCAAAGCGTTGCGAGCTGAGGCTGGGAAAAACCCGGTTTCCGTTGCCTGGGACATCTAACTGCCTAAATAATCAAAAATTTCGGACTGTAGTCTGTACCGACAAAGGAAATAGGGGGTACCATCAAAACAGTAAAAACAAACTTGCTTGGATTCAAAGCCTCAAACTGCTTTTCATCTTGCAAAATAGTTGGAATATTCTTAAAATAAAGACCATTAATTTGAATGTCATGATCTTAGAGGGCACATTTGATGTAGGCATAAAGTATTCGGTTAATATATTAAGCCGAAGGGTTAAAGTGTTTTTTTGGGACCATTTCAGAGCACCACGGGATTGTAGGATTCACCGCAAAGGGCTCCCTATTAGTTCATATGGT]

[+] EMBL CA761908             [TTTTTTTTTTTTTTTTTTTTCAAAAAAAATTAGAGTATTAGATCGAAATTTCTAAAGAAGGGGCAGGATAAAACAGGGAACCTAAAAACAACTCAAATTCAAAACAAAGGTCCAGTAAACAATGCAAGAAAGAATTTTACAAGAGACCATCAAAGAGTATATATGCACTTCCCTTGCACTATCAGGGGGCTTGACCGCTCGATCTGGGGGGGGGGGCTATCGCACAACGGTTGGGGAAAGGATGACAACTTCAGTTGCAAACGGGGGCACCCTCAGCCTCCACTGTTTATGCCCAGAATTCTCAAATCTCAAAGCGTTGCGAGCTGAGGCTGGGAAAAACCCGGTTTCCGTTGCCTGGGACATCTAACTGCCTAAATAATCAAAAATTTCGGACTGTAGTCTGTACCGACAAAGGAAATAGGGGGTACCATCAAAACAGTAAAAACAAACTTGCTTGGATTCAAAGCCTCAAACTGCTTTTCATCTTGCAAAATAGTTGGAATATTCTTAAAATAAAGACCATTAATTTGAATGTCATGATCTTAGAGGGCACATTTGATGTAGGCATAAAGTATTCGGTTAATATATTAAGCCGAAGGGTTAAAGTGTTTTTTTGGGACCATTTCAGAGCACCACGGGATTGTAGGATTCACCGCAAAGGGCTCCCTATTAGTTCATATGGT]




>consensus_3073#0
TTTTTTTTTTTTTTTTTTTTCAAAAAAAATTAGAGTATTAGATCGAAATTTCTAAAGAAG
GGGCAGGATAAAACAGGGAACCTAAAAACAACTCAAATTCAAAACAAAGGTCCAGTAAAC
AATGCAAGAAAGAATTTTACAAGAGACCATCAAAGAGTATATATGCACTTCCCTTGCACT
ATCAGGGGGCTTGACCGCTCGATCTGGGGGGGGGGGCTATCGCACAACGGTTGGGGAAAG
GATGACAACTTCAGTTGCAAACGGGGGCACCCTCAGCCTCCACTGTTTATGCCCAGAATT
CTCAAATCTCAAAGCGTTGCGAGCTGAGGCTGGGAAAAACCCGGTTTCCGTTGCCTGGGA
CATCTAACTGCCTAAATAATCAAAAATTTCGGACTGTAGTCTGTACCGACAAAGGAAATA
GGGGGTACCATCAAAACAGTAAAAACAAACTTGCTTGGATTCAAAGCCTCAAACTGCTTT
TCATCTTGCAAAATAGTTGGAATATTCTTAAAATAAAGACCATTAATTTGAATGTCATGA
TCTTAGAGGGCACATTTGATGTAGGCATAAAGTATTCGGTTAATATATTAAGCCGAAGGG
TTAAAGTGTTTTTTTGGGACCATTTCAGAGCACCACGGGATTGTAGGATTCACCGCAAAG
GGCTCCCTATTAGTTCATATGGT

consensusID : consensus_3073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [TTTTTTTCGATACAAAATATGCATTATTAACTGTCTTCATATATCAAATGTTATCTTACGTGGCAATGTGACCAAAGTTACGGATCACATCAATTACCATATTTAGCATTACAAAACAAAGCTAGAAATGATTTGGTTTTACATAATCATTCGATATGATTTTTGGGCTAGTAAAAAACTATGCTAACAGAATATGACAACACCAAGTCAACAGGCCCGTAGGATGTTAGTTAAATTCACAGTTGCAGCTTGAGGCCAATCTCGCCAATGAATACACGGTAGATCACTTGGAGCTCAGCCTCAGTGGCAGTTCCAACACCGTCACTCCTCAACAGGTGCCCCAAGTAACAATAGGATTCAAAATAAATTAGAGTATTAGATCGAAATTTCTAAAGAAAGTGCAGGATAAAACAAGGAACCTAAAAACAACTCAGATTCAAGACGAATGTACAGTAGACAATGCAAGAAAGAAATTTACAAGAGACCATCAGAGAGTATATATGCACTTCCCTTGCACTATCA]

[-] EMBL BI805083             [TTTTTTTCGATACAAAATATGCATTATTAACTGTCTTCATATATCAAATGTTATCTTACGTGGCAATGTGACCAAAGTTACGGATCACATCAATTACCATATTTAGCATTACAAAACAAAGCTAGAAATGATTTGGTTTTACATAATCATTCGATATGATTTTTGGGCTAGTAAAAAACTATGCTAACAGAATATGACAACACCAAGTCAACAGGCCCGTAGGATGTTAGTTAAATTCACAGTTGCAGCTTGAGGCCAATCTCGCCAATGAATACACGGTAGATCACTTGGAGCTCAGCCTCAGTGGCAGTTCCAACACCGTCACTCCTCAACAGGTGCCCCAAGTAACAATAGGATTCAAAATAAATTAGAGTATTAGATCGAAATTTCTAAAGAAAGTGCAGGATAAAACAAGGAACCTAAAAACAACTCAGATTCAAGACGAATGTACAGTAGACAATGCAAGAAAGAAATTTACAAGAGACCATCAGAGAGTATATATGCACTTCCCTTGCACTATCA]




>consensus_3073#1
TTTTTTTCGATACAAAATATGCATTATTAACTGTCTTCATATATCAAATGTTATCTTACG
TGGCAATGTGACCAAAGTTACGGATCACATCAATTACCATATTTAGCATTACAAAACAAA
GCTAGAAATGATTTGGTTTTACATAATCATTCGATATGATTTTTGGGCTAGTAAAAAACT
ATGCTAACAGAATATGACAACACCAAGTCAACAGGCCCGTAGGATGTTAGTTAAATTCAC
AGTTGCAGCTTGAGGCCAATCTCGCCAATGAATACACGGTAGATCACTTGGAGCTCAGCC
TCAGTGGCAGTTCCAACACCGTCACTCCTCAACAGGTGCCCCAAGTAACAATAGGATTCA
AAATAAATTAGAGTATTAGATCGAAATTTCTAAAGAAAGTGCAGGATAAAACAAGGAACC
TAAAAACAACTCAGATTCAAGACGAATGTACAGTAGACAATGCAAGAAAGAAATTTACAA
GAGACCATCAGAGAGTATATATGCACTTCCCTTGCACTATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3073#0      -TTTTTTTTTTTTTTTTTTTTCAAAAAAAATTAGAGTATTAGATCGAAATTTCTAAAGAA 59
consensus_3073#1      TTTTTTTCGATACAAAATATGCATTATTAACTGTCTTCATATATC-AAATGTTATCTTAC 59
                       ******   *      * * **  *  ** *    *  ** *** **** *      * 

consensus_3073#0      GGGGCAGGATAAAACAGGGAACCTAAAAACAACTCAAATTCAAAACAAAGGTCCAGTAAA 119
consensus_3073#1      GTGGCAATGTGACCAAAGTTAC---GGATCACATCAATTACCATATTTAGCATTACAAAA 116
                      * ****   * *   * *  **     * **  **** * * * *   **    *  ***

consensus_3073#0      CAATGCAAGAAAGAATTTTACAAGAGACCATCAAAGAGTATATATGCACTTCCCTTGCAC 179
consensus_3073#1      CAAAGCTAGAAATGATTTGGTTTTACATAATCATTCGATATG-----ATTT---TTGGGC 168
                      *** ** *****  ****      * *  ****     ***      * **   ***  *

consensus_3073#0      TATCAGGGGGCTTGACCGCTCGATCTGGGGGGGGGGGCTATCGCACAACGGTTGGGGAAA 239
consensus_3073#1      TAGTAAAAAACTATGCTAACAGAATATGACAACACCAAGTCAACAGGCCCGTAGGATGTT 228
                      **  *     **   *     **    *               **   * ** **     

consensus_3073#0      GGATGACAACTTCAGTTGCAAACGGGGGCACCCTCAGCCTCCACTGTTTATGCC-CAGAA 298
consensus_3073#1      AGTTAA-ATTCACAGTTGCAGCTTGAGGC-CAATC--TCGCCAATGAATACACGGTAGAT 284
                       * * * *    ********    * *** *  **   * *** **  **  *   *** 

consensus_3073#0      TTCTCAAATCTCAAAGCGTTGCGAGCTGAGGCTGGGAAAAACCCGGTTTCCGTTGCCTGG 358
consensus_3073#1      CACTTGGAGCTCA--GCCTC---AGTGGCAGTTCCAACACCGTCACTCCTCAACAGGTGC 339
                        **   * ****  ** *    **  *  * *   * *    *  *   *      ** 

consensus_3073#0      GACATCTAACTGCCTAAATAATCAAAAATTTCGGACTGTAGTCTGTACCGACAAAGGAAA 418
consensus_3073#1      CCCAAGTAACAATAGGATTCAAAATAAATTAGAGTATTAGATCGAAATTTCTAAAGAAAG 399
                        **  ****      * * *  * *****   *  *    **   *     **** ** 

consensus_3073#0      TAGGGGGTACCATCAAAACAGTAAAAACAAACTTGCTTGGATTCAAAGCCTCAAACTGCT 478
consensus_3073#1      TGCAGGATAAAACAAGGAACCTAAAAACAA-----CTCAGATTCAAGAC--GAATGTACA 452
                      *   ** **  *  *  *   *********     **  *******  *   **  * * 

consensus_3073#0      TTTCATCTTGCAAAATAGTTGGAATATTCTTAAAATAAAGACCATTAATTTGAATGTCAT 538
consensus_3073#1      GTAGACAATGCAAGAAAG-----AAATTTACAAGA----GACCATCAGAGAGTATAT-AT 502
                       *  *   ***** * **     * ***   ** *    ****** *    * ** * **

consensus_3073#0      GATCTTAGAGGGCACATTTGATGTAGGCATAAAGTATTCGGTTAATATATTAAGCCGAAG 598
consensus_3073#1      GCACTTCCCTTGCACTATCA---------------------------------------- 522
                      *  ***     ****  *                                          

consensus_3073#0      GGTTAAAGTGTTTTTTTGGGACCATTTCAGAGCACCACGGGATTGTAGGATTCACCGCAA 658
consensus_3073#1      ------------------------------------------------------------
                                                                                  

consensus_3073#0      AGGGCTCCCTATTAGTTCATATGGT 683
consensus_3073#1      -------------------------