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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[ATTGATGAGGTTTGCGTTTCCAAGGCCATCTGCATCATCAGGTAGCTGCAACATGGATCCACGGCCTCTCATCTGCTCCATCCAACGCCCGTCCTTGCTTTAATTTGTTTCACCACAGAAAATACTCCAGTCCAACTACACCGAGAGAGTAGACGAGACGAGACGAGACGACACAAGTCAAGTTGCTTTTGCATTTGCATACGCACACACTGCCATCTCAGTGTAGTGTAGTGTAGCGAAGCAACCGGCGGCGATGGCGATGCGGTGGTGCTATGTCGGCAAGGCCACCAAGATCTTCTTCACCGTCCTGGCCCTCCTCGCCCTCATCGGTGTCGTCCTCGCCTTCCGCGCCCTCCTCCACCGCGCCAAGTCGCGCGCCAGCTCCTCCTCCTCCGCCTGCGCCGCCGCCGACGAGTGCCAGCCCATCCTGCCCGACACCGTCCCGCAGCCCTCCATGCCGTCAACAGCCGCCACCACTCCTCCGCCGCCGCACCAATATCCCTCCTTCCCCCCACCGGACGCCGCCATGCCCATGCCCATGCCGCAGCCCCCACCCCCTCTGCAGCCACCACCTCCAGCGATTGCGCAGCCCCCTCCCGCATTCGCCTCACCGCCTCCTCCCGACGCTCTCGTGCCCCCGCCGCCTCCTCCCGCTGCGCCTGCGCTGGTGACGCCACCGCCGGCGTCACCGTCAGCTCCTCCGCCCGCACCGGAGGCGCCAAGCCCAACGGCCTCCTGATGCCGCCGATTCTTCATCTCAGATTCAGAGCGGCTACTCTAGTGTGTCAGGTAGCCCGGCGATTCGATGTACTGCTAGTGATTCTGGCTAATCTTGCAATTCATTCGCAAAATTTTGCCTTGCTGAAATGCTGAGTTGAGTTCATCTCTGATGTTGCGTGAGTTGATTACACTGTACAAATAGTTGCCTGACAATTCTGTTGTTCCACCATCAAATTCATTTGTTGAATTTCAGTTATCTGAGGAG]
[+] EMBL AK109521 [ATTGATGAGGTTTGCGTTTCCAAGGCCATCTGCATCATCAGGTAGCTGCAACATGGATCCACGGCCTCTCATCTGCTCCATCCAACGCCCGTCCTTGCTTTAATTTGTTTCACCACAGAAAATACTCCAGTCCAACTACACCGAGAGAGTAGACGAGACGAGACGAGACGACACAAGTCAAGTTGCTTTTGCATTTGCATACGCACACACTGCCATCTCAGTGTAGTGTAGTGTAGCGAAGCAACCGGCGGCGATGGCGATGCGGTGGTGCTATGTCGGCAAGGCCACCAAGATCTTCTTCACCGTCCTGGCCCTCCTCGCCCTCATCGGTGTCGTCCTCGCCTTCCGCGCCCTCCTCCACCGCGCCAAGTCGCGCGCCAGCTCCTCCTCCTCCGCCTGCGCCGCCGCCGACGAGTGCCAGCCCATCCTGCCCGACACCGTCCCGCAGCCCTCCATGCCGTCAACAGCCGCCACCACTCCTCCGCCGCCGCACCAATATCCCTCCTTCCCCCCACCGGACGCCGCCATGCCCATGCCCATGCCGCAGCCCCCACCCCCTCTGCAGCCACCACCTCCAGCGATTGCGCAGCCCCCTCCCGCATTCGCCTCACCGCCTCCTCCCGACGCTCTCGTGCCCCCGCCGCCTCCTCCCGCTGCGCCTGCGCTGGTGACGCCACCGCCGGCGTCACCGTCAGCTCCTCCGCCCGCACCGGAGGCGCCAAGCCCAACGGCCTCCTGATGCCGCCGATTCTTCATCTCAGATTCAGAGCGGCTACTCTAGTGTGTCAGGTAGCCCGGCGATTCGATGTACTGCTAGTGATTCTGGCTAATCTTGCAATTCATTCGCAAAATTTTGCCTTGCTGAAATGCTGAGTTGAGTTCATCTCTGATGTTGCGTGAGTTGATTACACTGTACAAATAGTTGCCTGACAATTCTGTTGTTCCACCATCAAATTCATTTGTTGAATTTCAGTTATCTGAGGAG]
consensusID : consensus_3081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 974 fasta sequence
[TTTGCATACGCACACACTGCCATCTCAGTGTAGTGTAGTGTAGCGAAGCAACCGGCGGCGATGGCGATGCGGTGGTGCTATGTCGGCAAGGCCACCAAGATCTTCTTCACCGTCCTGGCCCTCCTCGCCCTCATCGGTGTCGTCCTCGCCTTCCGCGCCCTCCTCCACCGCGCCAAGTCGCGCGCCAGCTCCTCCTCCTCCGCCTGCGCCGCCGCCGACGAGTGCCAGCCCATCCTGCCCGACACCGTCCCGCAGCCCTCCATGCCGTCAACAGCCGCCACCACTCCTCCGCCGCCGCACCAATATCCCTCCTTCCCCCCACCGGACGCCGCCATGCCCATGCCCATGCCGCAGCCCCCACCCCCTCTGCAGCCACCACCTCCAGCGATTGCGCAGCCCCCTCCCGCATTCGCCTCACCGCCTCCTCCCGACGCTCTCGTGCCCCCGCCGCCTCCTCCCGCTGCGCCTGCGCTGGTGACGCCACCGCCGGCGTTACCGTCAGCTCCTCCGCCCGCACCGGAGGCGCCAAGCCCAACGGCCTCCTGATGCCGCCGATTCTTCATCTCAGATTCAGAGCGGCTACTCTAGTGTGTCAGTTATCTGAGGAGCATGACAGCGATGGATCTCATCTGTTTGTTTGTGATTGTGCCAATTAAATTACCTACCTATCTCGTACCGTACACACGACGGATGTTTGACCGGCATTGACCATCCTTGGATCCTGAACATCCCTTTCCAACTGTTTTCTTCCGTGCTTCAGTTGCTAATTGCTTTTCTTTCCTCAGAGGAAGTAAATTGGGGGATGCATTCAGATTCACCAAACTACTCTTTGCGCATCTTCTCCTTCCTCAAGGATCCAAAATAAAACACTCAAGGCATTTCAGTGTCAAAGAGAAGATGTCATTTTCAAGCACAAAAATAACTGTAACAGAAAAGTCAGCAATATATAATCTTCTCCACTTGTTGCATGCATG]
[+] EMBL AK107419 [TTTGCATACGCACACACTGCCATCTCAGTGTAGTGTAGTGTAGCGAAGCAACCGGCGGCGATGGCGATGCGGTGGTGCTATGTCGGCAAGGCCACCAAGATCTTCTTCACCGTCCTGGCCCTCCTCGCCCTCATCGGTGTCGTCCTCGCCTTCCGCGCCCTCCTCCACCGCGCCAAGTCGCGCGCCAGCTCCTCCTCCTCCGCCTGCGCCGCCGCCGACGAGTGCCAGCCCATCCTGCCCGACACCGTCCCGCAGCCCTCCATGCCGTCAACAGCCGCCACCACTCCTCCGCCGCCGCACCAATATCCCTCCTTCCCCCCACCGGACGCCGCCATGCCCATGCCCATGCCGCAGCCCCCACCCCCTCTGCAGCCACCACCTCCAGCGATTGCGCAGCCCCCTCCCGCATTCGCCTCACCGCCTCCTCCCGACGCTCTCGTGCCCCCGCCGCCTCCTCCCGCTGCGCCTGCGCTGGTGACGCCACCGCCGGCGTTACCGTCAGCTCCTCCGCCCGCACCGGAGGCGCCAAGCCCAACGGCCTCCTGATGCCGCCGATTCTTCATCTCAGATTCAGAGCGGCTACTCTAGTGTGTCAGTTATCTGAGGAGCATGACAGCGATGGATCTCATCTGTTTGTTTGTGATTGTGCCAATTAAATTACCTACCTATCTCGTACCGTACACACGACGGATGTTTGACCGGCATTGACCATCCTTGGATCCTGAACATCCCTTTCCAACTGTTTTCTTCCGTGCTTCAGTTGCTAATTGCTTTTCTTTCCTCAGAGGAAGTAAATTGGGGGATGCATTCAGATTCACCAAACTACTCTTTGCGCATCTTCTCCTTCCTCAAGGATCCAAAATAAAACACTCAAGGCATTTCAGTGTCAAAGAGAAGATGTCATTTTCAAGCACAAAAATAACTGTAACAGAAAAGTCAGCAATATATAATCTTCTCCACTTGTTGCATGCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3081#0 ATTGATGAGGTTTGCGTTTCCAAGGCCATCTGCATCATCAGGTAGCTGCAACATGGATCC 60
consensus_3081#1 ------------------------------------------------------------
consensus_3081#0 ACGGCCTCTCATCTGCTCCATCCAACGCCCGTCCTTGCTTTAATTTGTTTCACCACAGAA 120
consensus_3081#1 ------------------------------------------------------------
consensus_3081#0 AATACTCCAGTCCAACTACACCGAGAGAGTAGACGAGACGAGACGAGACGACACAAGTCA 180
consensus_3081#1 ------------------------------------------------------------
consensus_3081#0 AGTTGCTTTTGCATTTGCATACGCACACACTGCCATCTCAGTGTAGTGTAGTGTAGCGAA 240
consensus_3081#1 -------------TTTGCATACGCACACACTGCCATCTCAGTGTAGTGTAGTGTAGCGAA 47
***********************************************
consensus_3081#0 GCAACCGGCGGCGATGGCGATGCGGTGGTGCTATGTCGGCAAGGCCACCAAGATCTTCTT 300
consensus_3081#1 GCAACCGGCGGCGATGGCGATGCGGTGGTGCTATGTCGGCAAGGCCACCAAGATCTTCTT 107
************************************************************
consensus_3081#0 CACCGTCCTGGCCCTCCTCGCCCTCATCGGTGTCGTCCTCGCCTTCCGCGCCCTCCTCCA 360
consensus_3081#1 CACCGTCCTGGCCCTCCTCGCCCTCATCGGTGTCGTCCTCGCCTTCCGCGCCCTCCTCCA 167
************************************************************
consensus_3081#0 CCGCGCCAAGTCGCGCGCCAGCTCCTCCTCCTCCGCCTGCGCCGCCGCCGACGAGTGCCA 420
consensus_3081#1 CCGCGCCAAGTCGCGCGCCAGCTCCTCCTCCTCCGCCTGCGCCGCCGCCGACGAGTGCCA 227
************************************************************
consensus_3081#0 GCCCATCCTGCCCGACACCGTCCCGCAGCCCTCCATGCCGTCAACAGCCGCCACCACTCC 480
consensus_3081#1 GCCCATCCTGCCCGACACCGTCCCGCAGCCCTCCATGCCGTCAACAGCCGCCACCACTCC 287
************************************************************
consensus_3081#0 TCCGCCGCCGCACCAATATCCCTCCTTCCCCCCACCGGACGCCGCCATGCCCATGCCCAT 540
consensus_3081#1 TCCGCCGCCGCACCAATATCCCTCCTTCCCCCCACCGGACGCCGCCATGCCCATGCCCAT 347
************************************************************
consensus_3081#0 GCCGCAGCCCCCACCCCCTCTGCAGCCACCACCTCCAGCGATTGCGCAGCCCCCTCCCGC 600
consensus_3081#1 GCCGCAGCCCCCACCCCCTCTGCAGCCACCACCTCCAGCGATTGCGCAGCCCCCTCCCGC 407
************************************************************
consensus_3081#0 ATTCGCCTCACCGCCTCCTCCCGACGCTCTCGTGCCCCCGCCGCCTCCTCCCGCTGCGCC 660
consensus_3081#1 ATTCGCCTCACCGCCTCCTCCCGACGCTCTCGTGCCCCCGCCGCCTCCTCCCGCTGCGCC 467
************************************************************
consensus_3081#0 TGCGCTGGTGACGCCACCGCCGGCGTCACCGTCAGCTCCTCCGCCCGCACCGGAGGCGCC 720
consensus_3081#1 TGCGCTGGTGACGCCACCGCCGGCGTTACCGTCAGCTCCTCCGCCCGCACCGGAGGCGCC 527
************************** *********************************
consensus_3081#0 AAGCCCAACGGCCTCCTGATGCCGCCGATTCTTCATCTCAGATTCAGAGCGGCTACTCTA 780
consensus_3081#1 AAGCCCAACGGCCTCCTGATGCCGCCGATTCTTCATCTCAGATTCAGAGCGGCTACTCTA 587
************************************************************
consensus_3081#0 GTGTGTCAGGTAGCCCGGCGATTCGATGTACTGCTAGTGATTCTGGCTAATC--TTGCAA 838
consensus_3081#1 GTGTGTCAGTTATCTGAGGAGCATGA----CAGCGATGGATCTCATCTGTTTGTTTGTGA 643
********* ** * * ** * ** * *** ** * *** *
consensus_3081#0 TTCATTCGCAAAATTTTGCCTTGCTGAAATGCTGAGTTGAGTTCATCTCTGATGTT--GC 896
consensus_3081#1 TT-GTGCCAATTAAATTACCTACCT---ATCTCGTACCGTACACACGACGGATGTTTGAC 699
** * * * * ** *** ** ** * * ** * ****** *
consensus_3081#0 GTGAGTTGATTACACT---GTACAAATAGTTGCCTGACAATTCTGTTGTTCCACCATCAA 953
consensus_3081#1 CGGCATTGACCATCCTTGGATCCTGAACATCCCTTTCCAACTGTTTTCTTCCGTGCTTCA 759
* **** * ** * * * * * * *** * * ** **** * *
consensus_3081#0 ATTCATTTGTTGAATTTCAGTTATCTGAGGAG---------------------------- 985
consensus_3081#1 GTT-GCTAATTGCTTTTCTTTCCTCAGAGGAAGTAAATTGGGGGATGCATTCAGATTCAC 818
** * *** **** * ** *****
consensus_3081#0 ------------------------------------------------------------
consensus_3081#1 CAAACTACTCTTTGCGCATCTTCTCCTTCCTCAAGGATCCAAAATAAAACACTCAAGGCA 878
consensus_3081#0 ------------------------------------------------------------
consensus_3081#1 TTTCAGTGTCAAAGAGAAGATGTCATTTTCAAGCACAAAAATAACTGTAACAGAAAAGTC 938
consensus_3081#0 ------------------------------------
consensus_3081#1 AGCAATATATAATCTTCTCCACTTGTTGCATGCATG 974
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||