These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1720 fasta sequence [TAGCGATCCGCAGCGCACGCACGCACGGACGGACGCCATGGACGAAGCCCTGGTGGGCAGGCTGGAGGCCGCGGTGTCCCGGCTCGAAGCTCTCAATGGCGCCGCCGGTGCCACGGCGAGAGGCGGCTACGGCGGCCAGGTCGACCACGCGTCGGCGCATGACCCAGCGATCCTGGCGTTCGACGAGCTCGTCGCCGGCGCCGTCGGGAGGGTGTCGGCGGCGGCCGGCAAGATCGGGGCGGAGGTCGCGGAGGTGACCAGGGTGCTGGAGAAGGCGTTCTTGGTTGGGAAGGACCTTCTTGTCAGGACCAAGCAAACTCAGAAGCCAACCGTGGATTCCATCGCAGTATTCATGGGGCCTCTGAATGAAACAATATTGGAGGCAAATTCATTGGCAGAGGGGACAAGATCGAGCCATGGCAACCATCTGAAAGCAGCCGCCGGTAGCCTGGCCGCTCTGGCGTGGATTGGGTACACCGGCAAAGGTTGCGGTATGCCCCTTCCTATTGCTCATGTAGAAGAGAGTTGGCAAATGGCAGAGTTCTACAGCAATAAGGTGCTTGTGGAGTACAAAAGCAAGGACCCTGATCATGTAGAGTGGGCAAAAGCTCTAAAAGAGCTCTTCGTGCCTAGTTTGCGTGACTATGTGAAGACATTCTACCCTTTGGGCCCTGTGTGGCAACCTCCTGGGAGTTCAACAAGCAAAGCACCTTCTGCTCCCTGCCCTCCTTCTGCATCTCTTTTCAGTTCTTCAGCTCAATCATCACAACCAAAAACCGGAATGTCCGCAGTCTTCGCTGAAATCAGCTCTGGGAAATCAATGACACAAGGTCTTAGGACGGTGACAGCTGACATGAAGAGCAAGAATAGAACGGATAGAACTGGTGTTGTAGCTGCTGAAGGAAAAGAAGCTCATAAGAAACCCTCCTCTAGTTCAACCAAATTACCTTCTAAATTGGAGCTCCAAATGGGTCGCAAATGGATTGTTGAACATCATGTTGGCAACAAGAACTTAGTAATTGAAGATTGTGATACCAAGCAATCCATATATGTATTTGGATGCAAGGATTCTGTGCTACAGGTCAAAGGAAAAGTGAACAACATAACTATTGATAAGTGTAGCAAAATGGGATTATTGTTCAAGGGTGTTGTCGCTGCTTGTGAAATTGTGAACTGCAACAGTATAGAGGTCCAATGTGAGGGCTCTGTACCAACTATATCGATTGATAACACTTCTGGCTGCCAACTTTATTTAAGCAAGGAATCTTTAGAGACATCTATAACAACTGCTAAATCTAGTGAAATCAATGCTCTTGTTCCAGATGCAAACAGCGACGGCGATTGGGCCGAGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGTTCGTTTTCTTTTAATTGTTTAAATTAACTAACCAGTTACCCTTCCATCCTGGTTTGTACATAGAGCAAGCCAGTCCTGTTCATTTGGCTCAGGTACTGCACATTTTCCTCTACCACAACGTATTAATCCTACAGTTCCAACTAGGAAGAATAATCTTCTGTCAGGCTGTATGCAATTCAGTAATTTTGTAACTGTTCTACTGAATGTAATAGTACTCTCAAGTCTCAATTCTCCAACAAATAAAATGGCATCA] [+] EMBL AK071446 [TAGCGATCCGCAGCGCACGCACGCACGGACGGACGCCATGGACGAAGCCCTGGTGGGCAGGCTGGAGGCCGCGGTGTCCCGGCTCGAAGCTCTCAATGGCGCCGCCGGTGCCACGGCGAGAGGCGGCTACGGCGGCCAGGTCGACCACGCGTCGGCGCATGACCCAGCGATCCTGGCGTTCGACGAGCTCGTCGCCGGCGCCGTCGGGAGGGTGTCGGCGGCGGCCGGCAAGATCGGGGCGGAGGTCGCGGAGGTGACCAGGGTGCTGGAGAAGGCGTTCTTGGTTGGGAAGGACCTTCTTGTCAGGACCAAGCAAACTCAGAAGCCAACCGTGGATTCCATCGCAGTATTCATGGGGCCTCTGAATGAAACAATATTGGAGGCAAATTCATTGGCAGAGGGGACAAGATCGAGCCATGGCAACCATCTGAAAGCAGCCGCCGGTAGCCTGGCCGCTCTGGCGTGGATTGGGTACACCGGCAAAGGTTGCGGTATGCCCCTTCCTATTGCTCATGTAGAAGAGAGTTGGCAAATGGCAGAGTTCTACAGCAATAAGGTGCTTGTGGAGTACAAAAGCAAGGACCCTGATCATGTAGAGTGGGCAAAAGCTCTAAAAGAGCTCTTCGTGCCTAGTTTGCGTGACTATGTGAAGACATTCTACCCTTTGGGCCCTGTGTGGCAACCTCCTGGGAGTTCAACAAGCAAAGCACCTTCTGCTCCCTGCCCTCCTTCTGCATCTCTTTTCAGTTCTTCAGCTCAATCATCACAACCAAAAACCGGAATGTCCGCAGTCTTCGCTGAAATCAGCTCTGGGAAATCAATGACACAAGGTCTTAGGACGGTGACAGCTGACATGAAGAGCAAGAATAGAACGGATAGAACTGGTGTTGTAGCTGCTGAAGGAAAAGAAGCTCATAAGAAACCCTCCTCTAGTTCAACCAAATTACCTTCTAAATTGGAGCTCCAAATGGGTCGCAAATGGATTGTTGAACATCATGTTGGCAACAAGAACTTAGTAATTGAAGATTGTGATACCAAGCAATCCATATATGTATTTGGATGCAAGGATTCTGTGCTACAGGTCAAAGGAAAAGTGAACAACATAACTATTGATAAGTGTAGCAAAATGGGATTATTGTTCAAGGGTGTTGTCGCTGCTTGTGAAATTGTGAACTGCAACAGTATAGAGGTCCAATGTGAGGGCTCTGTACCAACTATATCGATTGATAACACTTCTGGCTGCCAACTTTATTTAAGCAAGGAATCTTTAGAGACATCTATAACAACTGCTAAATCTAGTGAAATCAATGCTCTTGTTCCAGATGCAAACAGCGACGGCGATTGGGCCGAGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGTTCGTTTTCTTTTAATTGTTTAAATTAACTAACCAGTTACCCTTCCATCCTGGTTTGTACATAGAGCAAGCCAGTCCTGTTCATTTGGCTCAGGTACTGCACATTTTCCTCTACCACAACGTATTAATCCTACAGTTCCAACTAGGAAGAATAATCTTCTGTCAGGCTGTATGCAATTCAGTAATTTTGTAACTGTTCTACTGAATGTAATAGTACTCTCAAGTCTCAATTCTCCAACAAATAAAATGGCATCA] consensusID : consensus_3099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [CNACAATATCCNACCAATTGAGCCNAGGNCAACCACTTTACTTGACACTTGAAAAGTNGGATTTCTAGAAATGNGGAATTTTTGTCTTCATATTGTNCCATAATGCGTGCCAATTCTGCCTGTAGCTGATAAGGCGTAAAACAGCTTATCAGCAACAAAAATATANNNTGTGAGTAGAAAAATTATATCCGTGNCCTTAGCAAAATTCGAAAATTAAGTTTTGAATTCAAATTTTGGCGACGGCTTATAAAGTGAAAGGCAAACAATGNGAGGCCTGAGTCATCTCTTTTTAATATTTGCAGGCCGGGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGNTCGGTTTCTTTTAATTGNTTAAATTAACTAACCAGGTACCCTTCCATCCTGGGTTGTNCATAGAGCAAGCCAGTCCTGNTCATTTGGCTCAGGNACTGCNCATTTTCCTCTACCACAACGNATTAATCCTACAGGTCCAACTAGGAAGAATAATCTTCTGGCAGGCTGNATGCAATTCAGTAATTTTGNNACTGGTCTACTGAATGGAATAGNACTCCCAAGNCTCAATTCTCCAACAAATAAAAAGGGATCAATTCACTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGCGNCNCC] [+] EMBL CA765398 [CNACAATATCCNACCAATTGAGCCNAGGNCAACCACTTTACTTGACACTTGAAAAGTNGGATTTCTAGAAATGNGGAATTTTTGTCTTCATATTGTNCCATAATGCGTGCCAATTCTGCCTGTAGCTGATAAGGCGTAAAACAGCTTATCAGCAACAAAAATATANNNTGTGAGTAGAAAAATTATATCCGTGNCCTTAGCAAAATTCGAAAATTAAGTTTTGAATTCAAATTTTGGCGACGGCTTATAAAGTGAAAGGCAAACAATGNGAGGCCTGAGTCATCTCTTTTTAATATTTGCAGGCCGGGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGNTCGGTTTCTTTTAATTGNTTAAATTAACTAACCAGGTACCCTTCCATCCTGGGTTGTNCATAGAGCAAGCCAGTCCTGNTCATTTGGCTCAGGNACTGCNCATTTTCCTCTACCACAACGNATTAATCCTACAGGTCCAACTAGGAAGAATAATCTTCTGGCAGGCTGNATGCAATTCAGTAATTTTGNNACTGGTCTACTGAATGGAATAGNACTCCCAAGNCTCAATTCTCCAACAAATAAAAAGGGATCAATTCACTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGCGNCNCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3099#0 TAGCGATCCGCAGCGCACGCACGCACGGACGGACGCCATGGACGAAGCCCTGGTGGGCAG 60 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 GCTGGAGGCCGCGGTGTCCCGGCTCGAAGCTCTCAATGGCGCCGCCGGTGCCACGGCGAG 120 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 AGGCGGCTACGGCGGCCAGGTCGACCACGCGTCGGCGCATGACCCAGCGATCCTGGCGTT 180 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 CGACGAGCTCGTCGCCGGCGCCGTCGGGAGGGTGTCGGCGGCGGCCGGCAAGATCGGGGC 240 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 GGAGGTCGCGGAGGTGACCAGGGTGCTGGAGAAGGCGTTCTTGGTTGGGAAGGACCTTCT 300 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 TGTCAGGACCAAGCAAACTCAGAAGCCAACCGTGGATTCCATCGCAGTATTCATGGGGCC 360 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 TCTGAATGAAACAATATTGGAGGCAAATTCATTGGCAGAGGGGACAAGATCGAGCCATGG 420 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 CAACCATCTGAAAGCAGCCGCCGGTAGCCTGGCCGCTCTGGCGTGGATTGGGTACACCGG 480 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 CAAAGGTTGCGGTATGCCCCTTCCTATTGCTCATGTAGAAGAGAGTTGGCAAATGGCAGA 540 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 GTTCTACAGCAATAAGGTGCTTGTGGAGTACAAAAGCAAGGACCCTGATCATGTAGAGTG 600 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 GGCAAAAGCTCTAAAAGAGCTCTTCGTGCCTAGTTTGCGTGACTATGTGAAGACATTCTA 660 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 CCCTTTGGGCCCTGTGTGGCAACCTCCTGGGAGTTCAACAAGCAAAGCACCTTCTGCTCC 720 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 CTGCCCTCCTTCTGCATCTCTTTTCAGTTCTTCAGCTCAATCATCACAACCAAAAACCGG 780 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 AATGTCCGCAGTCTTCGCTGAAATCAGCTCTGGGAAATCAATGACACAAGGTCTTAGGAC 840 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 GGTGACAGCTGACATGAAGAGCAAGAATAGAACGGATAGAACTGGTGTTGTAGCTGCTGA 900 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 AGGAAAAGAAGCTCATAAGAAACCCTCCTCTAGTTCAACCAAATTACCTTCTAAATTGGA 960 consensus_3099#1 ------------------------------------------------------------ consensus_3099#0 GCTCCAAATGGGTCGCAAATGGATTGTTGAACATCATGTTGGCAACAAGAACTTAGTAAT 1020 consensus_3099#1 ------------------------------------------CNACAATATCCNACCAAT 18 * **** * * * *** consensus_3099#0 TGAAGATTGTGATACCAAGCAATCCATATATGTATTTGGATGCAAGGATTCTGTGCTACA 1080 consensus_3099#1 TGAGC----CNAGGNCAACCACTTTACTTG-ACACTTGAAAAGTNGGATTT----CTAGA 69 *** * *** ** * * * * *** * ***** *** * consensus_3099#0 GGTCAAAGGAAAAGTGAACAACATAACTATTGATAAGTGTAGCAAAATGGGATTATTGTT 1140 consensus_3099#1 AAT--GNGGAATTTTTGTCTTCATATTGTNCCATAATGCGTGCCAATTCTGCCTGTAGCT 127 * **** * * **** **** ** ** * * * * * * consensus_3099#0 CAAGGGTGTTGTCGCTGCTTGTGAAATTGTGAACTGCAACAGTATAGAGGTCCAATGTGA 1200 consensus_3099#1 GATAAGGCGTAAAACAGCTT--------ATCAGCAACAAAAATATANNNTGTGAGTAGAA 179 * * * * **** * * * *** * **** * * * consensus_3099#0 GGGCTCTGTAC-CAACTATATCGATTGATAACACTTCTGGCTGCCAACTTTATTTAAGCA 1259 consensus_3099#1 AAATTATATCCGTGNCCTTAGCAAAATTCGAAAATTAAGTTTTGAATTCAAATTTTGGCG 239 * * * * * ** * * * * ** * * * **** ** consensus_3099#0 AGGAATCTTTAGAGACATCTATAACAACTGCTAAATCTAGTGAAATCAATGCTCTTGTTC 1319 consensus_3099#1 ACGG-CTTATAAAGTGAAAGGCAAACAATGNGAGGCCTG----AGTCATCTCTTTT-TAA 293 * * * ** ** * ** * ** * ** * *** ** ** * consensus_3099#0 CAGATGCAAACAGCGACGGCGATTGGGCCGAGCATTCCTTACCCCAGCAGTTCATTCATG 1379 consensus_3099#1 TATTTGCA-----------------GGCCGGGCATTCCTTACCCCAGCAGTTCATTCATG 336 * **** ***** ***************************** consensus_3099#0 CTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTT 1439 consensus_3099#1 CTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTT 396 ************************************************************ consensus_3099#0 CACCATCAACGCCTTTCATTATTGGAGTTCGTTTTCTTTTAATTGTTTAAATTAACTAAC 1499 consensus_3099#1 CACCATCAACGCCTTTCATTATTGGAGNTCGGTTTCTTTTAATTGNTTAAATTAACTAAC 456 *************************** *** ************* ************** consensus_3099#0 CAGTTACCCTTCCATCCTGGTTTGTACATAGAGCAAGCCAGTCCTGTTCATTTGGCTCAG 1559 consensus_3099#1 CAGGTACCCTTCCATCCTGGGTTGTNCATAGAGCAAGCCAGTCCTGNTCATTTGGCTCAG 516 *** **************** **** ******************** ************* consensus_3099#0 GTACTGCACATTTTCCTCTACCACAACGTATTAATCCTACAGTTCCAACTAGGAAGAATA 1619 consensus_3099#1 GNACTGCNCATTTTCCTCTACCACAACGNATTAATCCTACAGGTCCAACTAGGAAGAATA 576 * ***** ******************** ************* ***************** consensus_3099#0 ATCTTCTGTCAGGCTGTATGCAATTCAGTAATTTTGTAACTGTTCTACTGAATGTAATAG 1679 consensus_3099#1 ATCTTCTGGCAGGCTGNATGCAATTCAGTAATTTTGNNACTGGTCTACTGAATGGAATAG 636 ******** ******* ******************* **** *********** ***** consensus_3099#0 TACTCTCAAGTCTCAATTCTCCAACAAATAAAATGGCATCA------------------- 1720 consensus_3099#1 NACTCCCAAGNCTCAATTCTCCAACAAATAAAAAGGGATCAATTCACTTTTTAAAAAAAA 696 **** **** ********************** ** **** consensus_3099#0 ------------------------------- consensus_3099#1 AAAAAAAAAAAAAAAAAAAGNGGGCGNCNCC 727 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||