These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [AGTTGAAGACTGAGAAGTTGTCACTGAATATCGAGTCATAGCTCTTCTCTTTAATCTGTCAATATAGCACACCCAAAATACAGCAGGACCAATTGTTTCTTTTACTACACCACAGCACAAACTTACATGAAGAGGCAAAAATTAATCTACATGGTAGGTGTACACAGTGTATAAAGTGGCATACTTGTGATGCGTCGTGCACAACAAAATAGAGAGGAATAGAGGAGCAAAAACCTTGCAAGGAATCCAATACAATTTCTTGCACAACATTTAGCATCATCATGTTCTGTAATCCATCTTCTCTACAATGAGAATAAATGTTAGAAAATAATGGTATGGAGCTGAAAACAGGACCTCATATCATAGATCAGTTAAGACAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTACAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACATGATATGCACCGTGCATAGCAAAATANGGGGAAATTGCAGGGGGCAAAGGAGGGGATCTGAAAAGAGATGAAAGANAAATTCCTGGACAACAAATATTAGCCAGTCCATCTAGCAGCATCATGGTATGTAATTCGNCTTCCCTGCATGAGAATNAAT] [+] EMBL CA765829 [AGTTGAAGACTGAGAAGTTGTCACTGAATATCGAGTCATAGCTCTTCTCTTTAATCTGTCAATATAGCACACCCAAAATACAGCAGGACCAATTGTTTCTTTTACTACACCACAGCACAAACTTACATGAAGAGGCAAAAATTAATCTACATGGTAGGTGTACACAGTGTATAAAGTGGCATACTTGTGATGCGTCGTGCACAACAAAATAGAGAGGAATAGAGGAGCAAAAACCTTGCAAGGAATCCAATACAATTTCTTGCACAACATTTAGCATCATCATGTTCTGTAATCCATCTTCTCTACAATGAGAATAAATGTTAGAAAATAATGGTATGGAGCTGAAAACAGGACCTCATATCATAGATCAGTTAAGACAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTACAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACATGATATGCACCGTGCATAGCAAAATANGGGGAAATTGCAGGGGGCAAAGGAGGGGATCTGAAAAGAGATGAAAGANAAATTCCTGGACAACAAATATTAGCCAGTCCATCTAGCAGCATCATGGTATGTAATTCGNCTTCCCTGCATGAGAATNAAT] consensusID : consensus_311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TTGAGCGTCGCGACAGGGTGATAAAGGCGCACCCCTCGGGGTGGGTGGGCCACGCGGAAATAAAGAGCAAGAGAGGAGCAAAAAGCCGCCAAGCAAAGCAATACAATTGCTTGCCGACCATGAGGATGCATCATCTTCCGTAATCCATGTTCTCGCCAATGACGATCAATGTTAGAAAATAATGGTATGGAGCTGAAACCAGGGCCTCATATCATAGATCAGTTAAGGCAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTGCAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACCTGATATGCCCCGTGCATAGCAAAATAGGGGGAATTGCAGGGGGCAAAGGAGGGAATCTGAAAAGAGATGAAAGATAAATTCCTGGGCAACAAATATTAGCCAGTCAATCTAGCAGCATCATGTTATGTAATTCGTCTTCCCTGCAATGAGAATAAATCTTCAAAAAAAAAAAAA] [-] EMBL CA760463 [TTGAGCGTCGCGACAGGGTGATAAAGGCGCACCCCTCGGGGTGGGTGGGCCACGCGGAAATAAAGAGCAAGAGAGGAGCAAAAAGCCGCCAAGCAAAGCAATACAATTGCTTGCCGACCATGAGGATGCATCATCTTCCGTAATCCATGTTCTCGCCAATGACGATCAATGTTAGAAAATAATGGTATGGAGCTGAAACCAGGGCCTCATATCATAGATCAGTTAAGGCAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAACTCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATCTGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTGCAAAACAACACCCAAATACTCACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAGGAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACCTGATATGCCCCGTGCATAGCAAAATAGGGGGAATTGCAGGGGGCAAAGGAGGGAATCTGAAAAGAGATGAAAGATAAATTCCTGGGCAACAAATATTAGCCAGTCAATCTAGCAGCATCATGTTATGTAATTCGTCTTCCCTGCAATGAGAATAAATCTTCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_311#0 AGTTGAAGACTGAGAAGTTGTCACTGAATATCGAGTCATAGCTCTTCTCTTTAATCTGTC 60 consensus_311#1 ------------------------------------------------------------ consensus_311#0 AATATAGCACACCCAAAATACAGCAGGACCAATTGTTTCTTTTACTACACCACAGCACAA 120 consensus_311#1 ------------------------------------------------------------ consensus_311#0 ACTTACATGAAGAGGCAAAAATTAATCTACATGGTAGGTGTACACAGTGT-ATAAAGTGG 179 consensus_311#1 -------------------------------TTGAGCGTCGCGACAGGGTGATAAAGGCG 29 * * ** **** ** ****** * consensus_311#0 CATACTT-GTGATGCGTCGTGCACAACAAAATAGAGAGGAATAGAGGAGCAAAAACCTTG 238 consensus_311#1 CACCCCTCGGGGTGGGTGGGCCACGCGGAAATAAAGAGCAAGAGAGGAGCAAAAAGCCGC 89 ** * * * * ** ** * *** ***** **** ** ************* * consensus_311#0 CAAGGAATCCAATACAATTTCTTGCACAACATTTAGCATCATCATGTTCTGTAATCCATC 298 consensus_311#1 CAAGCAAAGCAATACAATTGCTTGCCGACCATGAGGATGCATCATCTTCCGTAATCCATG 149 **** ** ********** ***** * *** * ****** *** ********* consensus_311#0 TTCTCTACAATGAGAATAAATGTTAGAAAATAATGGTATGGAGCTGAAAACAGGACCTCA 358 consensus_311#1 TTCTCGCCAATGACGATCAATGTTAGAAAATAATGGTATGGAGCTGAAACCAGGGCCTCA 209 ***** ****** ** ******************************* **** ***** consensus_311#0 TATCATAGATCAGTTAAGACAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAAC 418 consensus_311#1 TATCATAGATCAGTTAAGGCAACAAAAGGGTAAAAAGCTTTGAGAAAAAAGATAAGAAAC 269 ****************** ***************************************** consensus_311#0 TCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATC 478 consensus_311#1 TCAAGGCAGGCCATGACAAACCATGTATTACGAATATGCAATCCTCTACATAAGATAATC 329 ************************************************************ consensus_311#0 TGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTACAAAACAACACCCAAATACT 538 consensus_311#1 TGGTTGGTAGGCATTCAGTTTCCCCCCATAACTGAAGCTGCAAAACAACACCCAAATACT 389 *************************************** ******************** consensus_311#0 CACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAG 598 consensus_311#1 CACATTCAGTCAAGGTTAATTAACTAATATGGTAATAAAGTAGCAAAAGTAAAACAATAG 449 ************************************************************ consensus_311#0 GAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACATGATATGCACCGT 658 consensus_311#1 GAGCAATAATGAACAAAGAAGCTGCGCAGCAACAATAGTTTGTCACCTGATATGCCCCGT 509 ********************************************** ******** **** consensus_311#0 GCATAGCAAAATANGGGGAAATTGCAGGGGGCAAAGGAGGGGATCTGAAAAGAGATGAAA 718 consensus_311#1 GCATAGCAAAATAGGGGGAA-TTGCAGGGGGCAAAGGAGGGAATCTGAAAAGAGATGAAA 568 ************* ****** ******************** ****************** consensus_311#0 GANAAATTCCTGGACAACAAATATTAGCCAGTCCATCTAGCAGCATCATGGTATGTAATT 778 consensus_311#1 GATAAATTCCTGGGCAACAAATATTAGCCAGTCAATCTAGCAGCATCATGTTATGTAATT 628 ** ********** ******************* **************** ********* consensus_311#0 CGNCTTCCCTGCA-TGAGAATNAAT----------------- 802 consensus_311#1 CGTCTTCCCTGCAATGAGAATAAATCTTCAAAAAAAAAAAAA 670 ** ********** ******* *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||