These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1020 fasta sequence [TCAGGCATCACAATTCACAAACTAACTCGTAGCGATCGATCTCTATTTTGTTGGAGTTTTTGCTGCTTCCACTCAAATTGTTCAGAGACGTTTCGATCGATCAAGATCAACTTGATCGGGATCGCGGCAGCTCGATCAGCTAACTAGAGAACGTCTTGGACTCTTGGATTTCTCCGCGCTCTCGCAGTATTCTAGGAGACATTTCTTGATCGATATCACTAGCTATATATCGGTCGTTTGATCATGTCGTCCACCGGGCTTTCCCGCGGCCGCCGGTGCACCATCGCGTCGCGGCTAAACGCGTCGGCTGAGGCGGCGGTTGCGGCCACCAGCAGCAGCAGGGGGGAGAAGCAGAAGGCGGCGGTGGCGAGACGGGTGGAGTACTACGACGAGGAGGATGCGCGGGGGGAGGCGCGCTACGACGTTTTCATCAACCACAGGGGCGTGGACACCAAGAGGACGGTGGCGCGGCTTTTCTACGACCGCCTCGTCGCCGCGGGCGTCCGCGCCTTCCTGGACAACCAGTCAATGCGCCCCGGCGATCGCCTCGACGAGCGGATCAGCGAGGCCATCAGCCAGTGCGGCGTCGCGGTGGCCATCTTCTCGCCGCACTACTGCGACTCCGAGTATTGCCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGAAAAAGATCATCCCGGTGTTTTACAACATCAAACCCTCGGATCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGCGACATTGAACGCTTCAAATTCGCGCTACGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACACAGCCACAGGGTAGGTTTAAAATGCTGCAGCCATTTGGCGCCATTATATTCTCATACTTAGTAGCTAAGCTCGGTTAGCTTCTCGTTTGATCGCAACTGACGCATTTGTAATGGTGATCTGCCTCTACAGAGATCTTGCAGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACG] [+] EMBL AK108970 [TCAGGCATCACAATTCACAAACTAACTCGTAGCGATCGATCTCTATTTTGTTGGAGTTTTTGCTGCTTCCACTCAAATTGTTCAGAGACGTTTCGATCGATCAAGATCAACTTGATCGGGATCGCGGCAGCTCGATCAGCTAACTAGAGAACGTCTTGGACTCTTGGATTTCTCCGCGCTCTCGCAGTATTCTAGGAGACATTTCTTGATCGATATCACTAGCTATATATCGGTCGTTTGATCATGTCGTCCACCGGGCTTTCCCGCGGCCGCCGGTGCACCATCGCGTCGCGGCTAAACGCGTCGGCTGAGGCGGCGGTTGCGGCCACCAGCAGCAGCAGGGGGGAGAAGCAGAAGGCGGCGGTGGCGAGACGGGTGGAGTACTACGACGAGGAGGATGCGCGGGGGGAGGCGCGCTACGACGTTTTCATCAACCACAGGGGCGTGGACACCAAGAGGACGGTGGCGCGGCTTTTCTACGACCGCCTCGTCGCCGCGGGCGTCCGCGCCTTCCTGGACAACCAGTCAATGCGCCCCGGCGATCGCCTCGACGAGCGGATCAGCGAGGCCATCAGCCAGTGCGGCGTCGCGGTGGCCATCTTCTCGCCGCACTACTGCGACTCCGAGTATTGCCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGAAAAAGATCATCCCGGTGTTTTACAACATCAAACCCTCGGATCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGCGACATTGAACGCTTCAAATTCGCGCTACGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACACAGCCACAGGGTAGGTTTAAAATGCTGCAGCCATTTGGCGCCATTATATTCTCATACTTAGTAGCTAAGCTCGGTTAGCTTCTCGTTTGATCGCAACTGACGCATTTGTAATGGTGATCTGCCTCTACAGAGATCTTGCAGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACG] consensusID : consensus_3110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [TCCGGGNNTTGNCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGNAAAAGATCATCCCGGNGTTTTACAACATCAAACCCTCGGNTCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGNGACATTGAACGCTTCAAATTCGCGCTANGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACCCAGCCACAGGAGATCTTGCNGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACGCAAGGAAGACATATGATCATGTCCAGGCTGTAATTTGAATGGTTCATCGCGGCTTCACCATGNACAGNTCAGAGGACGAGACTAAGAAAAACCGGGGGCAATTTAACAAATAACATTTAACTTGGGATGGATTCATTCATTTTTTTTCTAGGTAGGTATTTTTTGGGTAAATAAATTAATCTGCAGGATTGAATTGGAACTATACGTAAAAATAAGCAATGCATGCAGCACTGAGTGACTAGCTAGCTAGGCAGTCCATGCCGACATGNGCATGAGAATAGGGGGTTTGCAAATAATTTATGGGCATATGGGNATATGGATTTACCCTGATTACNCCAATAAATTAAAAATACAGGGCNTTTTTTAACAGGGCTGCCNCTCTTTTGCATGGGNGGACTGGNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGNCNCCCCCGGGGGGGGNGCTCCACCTTTTTGGTNCCCTTTAAGGNNGGGTNAATTGNCCCCTTGGGGGAANCNTGGGCATAGCTGGTTNCCTNGGGGGAANTGGGTTTCC] [+] EMBL CA765462 [TCCGGGNNTTGNCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGNAAAAGATCATCCCGGNGTTTTACAACATCAAACCCTCGGNTCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGNGACATTGAACGCTTCAAATTCGCGCTANGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACCCAGCCACAGGAGATCTTGCNGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCATGAGGTCACGCAAGGAAGACATATGATCATGTCCAGGCTGTAATTTGAATGGTTCATCGCGGCTTCACCATGNACAGNTCAGAGGACGAGACTAAGAAAAACCGGGGGCAATTTAACAAATAACATTTAACTTGGGATGGATTCATTCATTTTTTTTCTAGGTAGGTATTTTTTGGGTAAATAAATTAATCTGCAGGATTGAATTGGAACTATACGTAAAAATAAGCAATGCATGCAGCACTGAGTGACTAGCTAGCTAGGCAGTCCATGCCGACATGNGCATGAGAATAGGGGGTTTGCAAATAATTTATGGGCATATGGGNATATGGATTTACCCTGATTACNCCAATAAATTAAAAATACAGGGCNTTTTTTAACAGGGCTGCCNCTCTTTTGCATGGGNGGACTGGNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGNCNCCCCCGGGGGGGGNGCTCCACCTTTTTGGTNCCCTTTAAGGNNGGGTNAATTGNCCCCTTGGGGGAANCNTGGGCATAGCTGGTTNCCTNGGGGGAANTGGGTTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3110#0 TCAGGCATCACAATTCACAAACTAACTCGTAGCGATCGATCTCTATTTTGTTGGAGTTTT 60 consensus_3110#1 ------------------------------------------------------------ consensus_3110#0 TGCTGCTTCCACTCAAATTGTTCAGAGACGTTTCGATCGATCAAGATCAACTTGATCG-- 118 consensus_3110#1 --------------------TCCGG----GNNTTGNCTCCGCGAGCTCGCCCTCCTCGTC 36 * * * * * * * ** ** * * *** consensus_3110#0 GGATCGCGGCAGCTCGATCAGCTAACTAGAGAACGTC-TTGGACTCTTGGATTTCTCCGC 177 consensus_3110#1 GAGTCACGGNAAAA-GATCATCCCGGNGTTTTACAACATCAAACCCTCGGNTCTCGTC-- 93 * ** *** * ***** * ** * * ** ** ** * ** * consensus_3110#0 GCTCTCGCAGTATTCTAGGAGACATTTCTTGATCGATATCACTAGCTATATATCGGTCGT 237 consensus_3110#1 -CTCCCGCAG-GCCGTCGTCGA-GTCCGTCGCTCACCATCCCCGNG---ACATTGAACGC 147 *** ***** * * ** * * * ** *** * * ** * ** consensus_3110#0 TTGATCATGTCGTCCACCGGGCTTTCCCGCGGCCGCCGGTGCACCATCGCGTCGCGGCTA 297 consensus_3110#1 TTCAAATTCGCGCTANGCGAGGTCAAGAACA-CAGTCGGC-CTCACCTACGACCCAGCCA 205 ** * * ** ** * * * * * *** * * ** * * ** * consensus_3110#0 AACGCG--TCGGCTGAGGCGGCGGTTGCGGCCACCAGCAGCAGCAGGGGGGAGAAGCAGA 355 consensus_3110#1 CAGGAGATCTTGCNGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACA 265 * * * ** *** * **** * * * ** * * * * * consensus_3110#0 AGGCGGCGGTGGCGAGACGGGTGGAGTACTACGACGAGGAGGATGCGCGGGGGGAGGCGC 415 consensus_3110#1 AGCATGAGGTCACGCAA-GGAAGACATATGATCATGTCCAGGCTGTAATTTGAATGGTTC 324 ** * *** ** * ** * ** * * * *** ** * ** * consensus_3110#0 GCTACGACGTTTTCATCAACCACAGGGGCGTGGACACCAAGAGGACGGTGGCGCGGCTTT 475 consensus_3110#1 ATCGCGGCTTCACCATGNACAGNTCAGAGGACGAGACTAAGAAAAACCGGGGGCAATTTA 384 ** * * *** ** * * ** ** **** * ** ** ** consensus_3110#0 TCTACGACCGCCTCGTCGCCGCGGGCGTCCGCGCCTTCCTGGACAACCAGTCAATGCGCC 535 consensus_3110#1 ACAAATAACATTTAACT-TGGGATGGATTCATTCATTTTTTTTCTA--GGTAGGTATTTT 441 * * * * * * * * * * ** * * * ** * consensus_3110#0 CCGGCGATCGCCTCGACGAGCGGATCAGCGAGGCCATCAGCCAGTGCGGCGTCGCGGTGG 595 consensus_3110#1 TTGGGTA-------AATAAATTAATCTGCAGGATTG--AATTGGAACTATA-CGTAAAAA 491 ** * * * *** ** * * * * ** consensus_3110#0 CCATCTTCTCGCCGCACTACTGCGACTCCGAGTATTGCCTCCGCGAGCTCGCCCTCCTCG 655 consensus_3110#1 TAAGC-----AATGCA----TGCAGCACTGAGTGACTAGCTAGCTAG---GCAGTCCATG 539 * * *** *** * * **** ** ** ** *** * consensus_3110#0 TCGAGTCACGGAAAAAGATCATCCCGGTGTTTTACAACATCAAACCCTCGGATCTCGTCC 715 consensus_3110#1 CCGACATGNGCATGAGAATA-----GGGGGTTTGCAA----ATAATTTATGGGCATATGG 590 *** * * * ** ** * *** *** * * * * * * consensus_3110#0 TCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGCGACATTGAACGCTTCAAAT 775 consensus_3110#1 GNATATGGATTTACCCTGATTACNCC----AATAAATTAAAAATACAGGGCNTTTTTTAA 646 * * ** * * * * * * * * * ** * consensus_3110#0 TCGCGCTACGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACACAGCCACAGGGTAGG 835 consensus_3110#1 CAGGGCTGCC---NCTCTTTTGCATGGGNGGACTGGNTTTCAAAAAAAAAAAAAAAAAAA 703 * *** * ** ** * ** ** * * * * * * * * consensus_3110#0 TTTAAAATGCTGCAGCCATTTGGCGCCATTATATTCTCATACTTAGTAGCT----AAGCT 891 consensus_3110#1 AAAAAAAAAGNGGGNCNCCCCCGGGGGGGGNGCTCCACCTTTTTGGTNCCCTTTAAGGNN 763 **** * * * * * * * * ** ** * * * consensus_3110#0 CGGTTAGCTTCTCGTTTGATCGCAACTGACGCATTTGTAATGGTGATCTGCCTCTACAGA 951 consensus_3110#1 GGGTNAATTGNCCCCTTGGGGGAANCNTGGGCAT---AGCTGGTTNCCTNGGGGGAANTG 820 *** * * * *** * * * **** **** ** * consensus_3110#0 GATCTTGCAGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCAT 1011 consensus_3110#1 GGTTTCC----------------------------------------------------- 827 * * * consensus_3110#0 GAGGTCACG 1020 consensus_3110#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||