These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [AGGGGAGTGGGAACTGGGGGAGCGGGTGGTCCTGAGGTTGATTGAGTTGGAACCAAGCAATAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGTTCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGNCTGGGGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAATATATGGAATCTTGGATGGCTTGGTGTCAAGACTTAAGTTAACAAGCAGAGTAAATGGGCAAATTGAATCTGGAGTTAAATAGCTCAGTGTACACTCACAGATTGACTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGGGGGCTTATGGGTTTGATTTTTTGANGGGTGTTCANGAGGCTATGTAGATAACCCACATGTCTGACAGGGNTTCAAAGAAAGNGGATACTCGAGTGNGCTCACTATCAGNCCCAAGCAACTGAANAGTCCGGGTTGGGATCAAAAATGGTTTTNAGGCTTTTGAGCCTGATATTGTGCCNCATTNACATACCTACNTTATTGCNCCCCAAACAGCAAGGGCTCNTGNAANATACNCCTTTGCTTTAANGNCNCGGGGGAAGACC] [+] EMBL CA765525 [AGGGGAGTGGGAACTGGGGGAGCGGGTGGTCCTGAGGTTGATTGAGTTGGAACCAAGCAATAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGTTCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGNCTGGGGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAATATATGGAATCTTGGATGGCTTGGTGTCAAGACTTAAGTTAACAAGCAGAGTAAATGGGCAAATTGAATCTGGAGTTAAATAGCTCAGTGTACACTCACAGATTGACTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGGGGGCTTATGGGTTTGATTTTTTGANGGGTGTTCANGAGGCTATGTAGATAACCCACATGTCTGACAGGGNTTCAAAGAAAGNGGATACTCGAGTGNGCTCACTATCAGNCCCAAGCAACTGAANAGTCCGGGTTGGGATCAAAAATGGTTTTNAGGCTTTTGAGCCTGATATTGTGCCNCATTNACATACCTACNTTATTGCNCCCCAAACAGCAAGGGCTCNTGNAANATACNCCTTTGCTTTAANGNCNCGGGGGAAGACC] consensusID : consensus_3121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [GCTCAGTGTACACTCACAGATTGATTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGTGGCTTATGGTTTTGATTTTTTGAGGGGTGTTCAGGAGGCTATGTAGATAACCCACATGTCTGACAGGGTTTCAAGAAGTGGATACTCGAGTGTGCTCACTATCAGTCCAAAGCAACTGAAGAGTCGGTTGGATCAGAAATGTTTTCAGGCTTTGAGCTGATATGTGCACATCACATACATACATATGCACCAAACAGCAAGTCTCTGAATATACACTTGCTTAGTGCCAGTGGAAGACAATTATATGAATAGAGAGAATTCTCATTCACTTTATAAATGCTCTCGATAACTAGCGCCT] [+] EMBL CB096607 [GCTCAGTGTACACTCACAGATTGATTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGTGGCTTATGGTTTTGATTTTTTGAGGGGTGTTCAGGAGGCTATGTAGATAACCCACATGTCTGACAGGGTTTCAAGAAGTGGATACTCGAGTGTGCTCACTATCAGTCCAAAGCAACTGAAGAGTCGGTTGGATCAGAAATGTTTTCAGGCTTTGAGCTGATATGTGCACATCACATACATACATATGCACCAAACAGCAAGTCTCTGAATATACACTTGCTTAGTGCCAGTGGAAGACAATTATATGAATAGAGAGAATTCTCATTCACTTTATAAATGCTCTCGATAACTAGCGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3121#0 AGGGGAGTGGGAACTGGGGGAGCGGGTGGTCCTGAGGTTGATTGAGTTGGAACCAAGCAA 60 consensus_3121#1 ------------------------------------------------------------ consensus_3121#0 TAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGT 120 consensus_3121#1 ------------------------------------------------------------ consensus_3121#0 TCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGNCT 180 consensus_3121#1 ------------------------------------------------------------ consensus_3121#0 GGGGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAAT 240 consensus_3121#1 ------------------------------------------------------------ consensus_3121#0 ATATGGAATCTTGGATGGCTTGGTGTCAAGACTTAAGTTAACAAGCAGAGTAAATGGGCA 300 consensus_3121#1 ------------------------------------------------------------ consensus_3121#0 AATTGAATCTGGAGTTAAATAGCTCAGTGTACACTCACAGATTGACTTGAAGCTGTACAG 360 consensus_3121#1 ---------------------GCTCAGTGTACACTCACAGATTGATTTGAAGCTGTACAG 39 ************************ ************** consensus_3121#0 AATTTTTTGGGGGCAACTAGCCGATTTCAAGGGGGCTTATGGGTTTGATTTTTTGANGGG 420 consensus_3121#1 AATTTTTTGGGGGCAACTAGCCGATTTCAAGTGG-CTTATGGTTTTGATTTTTTGAGGGG 98 ******************************* ** ******* ************* *** consensus_3121#0 TGTTCANGAGGCTATGTAGATAACCCACATGTCTGACAGGGNTTCAAAGAAAGNGGATAC 480 consensus_3121#1 TGTTCAGGAGGCTATGTAGATAACCCACATGTCTGACAGGGTTTCAAG--AAGTGGATAC 156 ****** ********************************** ***** *** ****** consensus_3121#0 TCGAGTGNGCTCACTATCAGNCCCAAGCAACTGAANAGTCCGGGTTGGGATCAAAAATGG 540 consensus_3121#1 TCGAGTGTGCTCACTATCAGTCCAAAGCAACTGAAGAGTC--GGTTGG-ATCAGAAATG- 212 ******* ************ ** *********** **** ****** **** ***** consensus_3121#0 TTTTNAGGCTTTTGAGCCTGATATTGTGCCNCATTNACATACCTACNTTATTGCNCCCCA 600 consensus_3121#1 TTTTCAGGCTTT-GAGC-TGATAT-GTGC-ACAT-CACATACATACAT----ATGCACCA 263 **** ******* **** ****** **** *** ****** *** * * *** consensus_3121#0 AACAGCAAGGGCTCNTGNAANATACNCCTTTGCTTTAANGNCNCGGGGGAAGACC----- 655 consensus_3121#1 AACAGCAAG---TCTCTGAATATACAC--TTGCTTAGTGCCAGTGGAAGACAATTATATG 318 ********* ** ** **** * ****** ** ** * consensus_3121#0 --------------------------------------------------- consensus_3121#1 AATAGAGAGAATTCTCATTCACTTTATAAATGCTCTCGATAACTAGCGCCT 369 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||