These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1259 fasta sequence [CCCCGCCTTTACGCGAGAATAACCCTCCCGAAACCCTCCTTCCCCGATCGATGCCGCCGCCGCCGCCTCCTCCGCCGGAGTGGGCCGACCTCCCGGTGGACGCGGTCCTGGCGGTGTTCGAGCGGCTGGGCGCGGCGGAAGTGCTGATGGGCGCCGGGGTGGTGTGCCGCAGCTGGCTCCGCGCGGCCACCCGCGAGCCGCGGCTCTGGCGCCGGGTGGACCTCACCGCCTGCTTCGACCCCACCGTCGACATGGAGGCCATGGCGCGCGCGGCCGTCGACCGCGCCGGCGGACGCCTCGAGCACTTCGCCGCCGAGCGCTTCGTCACCGATGAGCTCCTCCTCTACGTCGCCAAGAGAACTAGCTGCTTGAAAAGTCTTCGGCTACGTGATTGCATAAAAATCTCAGAGAAAGGCTTGGTTGCTGTTGGCAAGACATCTCCCTGTCTTGAGGAACTTGAGCTCACTACCTGCACCATCAGTATTTTGCTGAAGGCTGTTGGCGAAGCATTTCCGAACCTGAAGTGTCTGCGACTGAACCATCGTTGGTTTGATGTTCAGTTTGATGAGTTCAGAGATAACTTCCATGCCCTTGGAATAGCCTGCAGCATGCACAGGCTACGCCATCTTCAGATCTTTGCCAATCGGCTCCGCAACAATGCACTTGCTGCCATCCTTGACAACTGCCCGCACCTTGAGTCCCTTGACTTGCGTCAGTGCTTCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGTTCCCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAGATTCGCTCCCACTTCCATTTCCCGCAGCAGTTCCTCAATGGCCCTTCCATGGGAATGACGAGGATGACGACAATGATGGTGATCAGGACGATGACGATGATGGTGATCAGGACGATGATGACTTGGGCGGTCACAGGGTGACAGAGTATGGTTTTATCATCGGTGACTACCATGTCCGCGGTCGGATCATCCACCATGAGTAACTCGACATCTACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTCTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAA] [+] EMBL AK102355 [CCCCGCCTTTACGCGAGAATAACCCTCCCGAAACCCTCCTTCCCCGATCGATGCCGCCGCCGCCGCCTCCTCCGCCGGAGTGGGCCGACCTCCCGGTGGACGCGGTCCTGGCGGTGTTCGAGCGGCTGGGCGCGGCGGAAGTGCTGATGGGCGCCGGGGTGGTGTGCCGCAGCTGGCTCCGCGCGGCCACCCGCGAGCCGCGGCTCTGGCGCCGGGTGGACCTCACCGCCTGCTTCGACCCCACCGTCGACATGGAGGCCATGGCGCGCGCGGCCGTCGACCGCGCCGGCGGACGCCTCGAGCACTTCGCCGCCGAGCGCTTCGTCACCGATGAGCTCCTCCTCTACGTCGCCAAGAGAACTAGCTGCTTGAAAAGTCTTCGGCTACGTGATTGCATAAAAATCTCAGAGAAAGGCTTGGTTGCTGTTGGCAAGACATCTCCCTGTCTTGAGGAACTTGAGCTCACTACCTGCACCATCAGTATTTTGCTGAAGGCTGTTGGCGAAGCATTTCCGAACCTGAAGTGTCTGCGACTGAACCATCGTTGGTTTGATGTTCAGTTTGATGAGTTCAGAGATAACTTCCATGCCCTTGGAATAGCCTGCAGCATGCACAGGCTACGCCATCTTCAGATCTTTGCCAATCGGCTCCGCAACAATGCACTTGCTGCCATCCTTGACAACTGCCCGCACCTTGAGTCCCTTGACTTGCGTCAGTGCTTCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGTTCCCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAGATTCGCTCCCACTTCCATTTCCCGCAGCAGTTCCTCAATGGCCCTTCCATGGGAATGACGAGGATGACGACAATGATGGTGATCAGGACGATGACGATGATGGTGATCAGGACGATGATGACTTGGGCGGTCACAGGGTGACAGAGTATGGTTTTATCATCGGTGACTACCATGTCCGCGGTCGGATCATCCACCATGAGTAACTCGACATCTACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTCTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAA] consensusID : consensus_3128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [AATNTCAAGGNAAGGAAGGGTTTCCAANAAATTCANCAGGGATNGGTTGGGAATTTNTGGGAAACCCCTNAAGGGTTGTTTCNAAATTCCATTTCCGCNGCAGTTTCTTAAAGGNCCNTTCCAGGGGGGAAGNNGGGGGGGGGAACATGGTGGGAATTCNGGNCGGAGGCGGNGNTGGTAAATCAGGGACGATGATNAATNGGGCGTTCAACAGGGGGACAGGAGTAGGGTTTTNTTCATTCGGGGANTAACNATTTCCGCGGTCGGGATCATCCACCATGGAGTAAATTCGAAATTNAACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTNTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTNTGTATCCAACTGCAAGTNTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAACCTTTGTTCCTATTCTGCGTGTTGCCATAGCGCTTGTGGAAGTTTCTT] [-] EMBL BE229146 [AATNTCAAGGNAAGGAAGGGTTTCCAANAAATTCANCAGGGATNGGTTGGGAATTTNTGGGAAACCCCTNAAGGGTTGTTTCNAAATTCCATTTCCGCNGCAGTTTCTTAAAGGNCCNTTCCAGGGGGGAAGNNGGGGGGGGGAACATGGTGGGAATTCNGGNCGGAGGCGGNGNTGGTAAATCAGGGACGATGATNAATNGGGCGTTCAACAGGGGGACAGGAGTAGGGTTTTNTTCATTCGGGGANTAACNATTTCCGCGGTCGGGATCATCCACCATGGAGTAAATTCGAAATTNAACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTNTCAGGAAATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGGCGCATTTAGAACGGTTNTGTATCCAACTGCAAGTNTGCAACCGGTCTAGTGACCTCATGTGTAGTGGTAAAACCTTTGTTCCTATTCTGCGTGTTGCCATAGCGCTTGTGGAAGTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3128#0 CCCCGCCTTTACGCGAGAATAACCCTCCCGAAACCCTCCTTCCCCGATCGATGCCGCCGC 60 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 CGCCGCCTCCTCCGCCGGAGTGGGCCGACCTCCCGGTGGACGCGGTCCTGGCGGTGTTCG 120 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 AGCGGCTGGGCGCGGCGGAAGTGCTGATGGGCGCCGGGGTGGTGTGCCGCAGCTGGCTCC 180 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 GCGCGGCCACCCGCGAGCCGCGGCTCTGGCGCCGGGTGGACCTCACCGCCTGCTTCGACC 240 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 CCACCGTCGACATGGAGGCCATGGCGCGCGCGGCCGTCGACCGCGCCGGCGGACGCCTCG 300 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 AGCACTTCGCCGCCGAGCGCTTCGTCACCGATGAGCTCCTCCTCTACGTCGCCAAGAGAA 360 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 CTAGCTGCTTGAAAAGTCTTCGGCTACGTGATTGCATAAAAATCTCAGAGAAAGGCTTGG 420 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 TTGCTGTTGGCAAGACATCTCCCTGTCTTGAGGAACTTGAGCTCACTACCTGCACCATCA 480 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 GTATTTTGCTGAAGGCTGTTGGCGAAGCATTTCCGAACCTGAAGTGTCTGCGACTGAACC 540 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 ATCGTTGGTTTGATGTTCAGTTTGATGAGTTCAGAGATAACTTCCATGCCCTTGGAATAG 600 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 CCTGCAGCATGCACAGGCTACGCCATCTTCAGATCTTTGCCAATCGGCTCCGCAACAATG 660 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 CACTTGCTGCCATCCTTGACAACTGCCCGCACCTTGAGTCCCTTGACTTGCGTCAGTGCT 720 consensus_3128#1 ------------------------------------------------------------ consensus_3128#0 TCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGT 780 consensus_3128#1 ----------------------------------------AATNTCAAGGNAAGGAAGGG 20 ** * * * * *** consensus_3128#0 TCCCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAG 840 consensus_3128#1 TTTCCAANAAATTCANCAGGGA---TNGGT-TGGGAATTT--NTGGGAAACCCCTNAAGG 74 * * ** * * * ** *** * ** ** ** *** ** ** *** * consensus_3128#0 ATTCGCTCCCACTTCCATTTCCCGCAGCAGTTCCTCAATGGCCCTT-CCATGGGAATGAC 899 consensus_3128#1 GTTGTTTCNAAATTCCATTTCC-GCNGCAGTTTCTTAAAGGNCCNTTCCAGGGGGGAAGN 133 ** ** * ********** ** ****** ** ** ** ** * *** *** consensus_3128#0 GAGGATGACGACAATGATGGTGAT-CAGGACGATGACGATGATGGTGA-TCAGG-ACGAT 956 consensus_3128#1 NGGGGGGGGGAACATGGTGGGAATTCNGGNCGGAGGCGGNGNTGGTAAATCAGGGACGAT 193 ** * ** *** *** ** * ** ** * ** * **** * ***** ***** consensus_3128#0 GATGACTTGGGCGGTCA-CAGGGTGACAG-AGTATGGTTTTATCA--TCGGTGACTA-CC 1011 consensus_3128#1 GATNAATNGGGCGTTCAACAGGGGGACAGGAGTAGGGTTTTNTTCATTCGGGGANTAACN 253 *** * * ***** *** ***** ***** **** ****** * **** ** ** * consensus_3128#0 ATGTCCGCGGTCGG-ATCATCCACCATG-AGTAA-CTCGACATCTA-CATGCCGTAATTA 1067 consensus_3128#1 ATTTCCGCGGTCGGGATCATCCACCATGGAGTAAATTCGAAATTNAACATGCCGTAATTA 313 ** *********** ************* ***** **** ** * ************* consensus_3128#0 GCAGGTTTTGATGTCCCAGCGTCTGAGTCTCAGGAAATGGAAGGTAGGTGTTCAGAAGTA 1127 consensus_3128#1 GCAGGTTTTGATGTCCCAGCGTCTGAGTNTCAGGAAATGGAAGGTAGGTGTTCAGAAGTA 373 **************************** ******************************* consensus_3128#0 AGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGG 1187 consensus_3128#1 AGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAGAAGGG 433 ************************************************************ consensus_3128#0 CGCATTTAGAACGGTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGT 1247 consensus_3128#1 CGCATTTAGAACGGTTNTGTATCCAACTGCAAGTNTGCAACCGGTCTAGTGACCTCATGT 493 **************** ***************** ************************* consensus_3128#0 GTAGTGGTAAAA------------------------------------------------ 1259 consensus_3128#1 GTAGTGGTAAAACCTTTGTTCCTATTCTGCGTGTTGCCATAGCGCTTGTGGAAGTTTCTT 553 ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||