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Oryza sativa
cluster # 313 cluster # 313       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_313#0 length = 1537 sequences # 1  
 consensus_313#1 length = 405 sequences # 1  
consensusID : consensus_313#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1537
fasta sequence 
                              [TCGCTCCACCAGCGGCCGCACCAGAAGCCGCCGGCGACCGACTCGCCCAAAACCCTCGCGCCGGCGGCCGGGCCACGGCGCGGCGTGCCGCCCCTACCCCCATCCTATCGCGGCCTCGCCGCCGCCACCGGTGTGGCCGCGCCATGTTCCCCGGCCCCTCCTCCTCATCCGCCGCCGCCGGCCCCGGGTTCACCGAGAAGAACGGGCTCCATGTCGATCCCATGGCCGCCGCTGCCTGGAGCGGTGGGCGCACCAACGGCAAGGAGGATGCGGAGATGGTGCTTGCCGACCAGGAGGAGCTCGCCACTCCGAGCGCATCGGCCGGTGTTGGCGGACGCGAAGGGAGGCGGCGACGCGAGTGGATTGGGGGAGGAGGGAGGGGAGGAGCAAGTGGGGGAGCGGCGGGGGCCAGCGCCGGCGCCGGAGCCGGAGTCGATGCGGAGGGGCGCTAGAGCCGATGCCGAAGACAGAGAGAGCACCAACGGTCGTTAAATCCCCTCCTCGCCGGCGAGACTCTCCCTTCAACTCATCGATCTCTCGCTCTCCACTTCATCTCGCACTCTCTCAGCCAACGATTCCTCGCAAATCCTTGAAGAGATCGTGAGAAAGCTTCTTCTTGCTTGTGCTTGCGGCAATGGCGGGGGTGCACACGCACAGGGCATTCCTGCTCTGCAACTACCTGCTTCTTGGCGTTTCTGGATCGATTCGATCTGGTCAAAGAGATAAGAGAGAAGGGTATTTTGGTCAGGACAAAAAAATAAAATAGAGTAAAATCATTTCTATTAAAAAAAGACCAAAATAGCATTTTAGTGAACACTTTTAGGATTGCATTATCCAGCGAAACCATTTTACGACAGTAGAATCGCAATTTTCTCGTCTCTAGGGTTCCTCTTTTCCCAATCCCTTTCTCAGTTTCTCGTGCACTGCGGCGGCCGGCGGTGGTGCCGTGGTGGCGACTGGCAATGGGCGCCGGGCGGCGGCCGGCGGGTCGGCGATTCGGCATGGGTTCTGTGGCGCTGGCAGGCCAGCCCGGCAGCAACAAGGCAGCTGCTCAGCTTGGTAGCTCCTAGTCCTCAGCTCAGTCGCTCAGCAGTCCATCCAGCTGCAGGCAGTAGGCACTTAGGCAGAGGTCAAGTTGAATTAATTTGTCAGATATAAAAAGGAACAACAGAAATATGGGCATACTTTCTTTATTGAGCAAGGTCCCTAATTCAGATTCTGCATCTCCTAGGACAGGGCTTCACATTTCTCATGGGGTAACTATAGGAAGGAAGAGTAACTGAAGAAACTCGAGAAAATGAGACTTTGCAATTGGTGTTGTTTTCTTCTTCTTCAATCCCAACAGAGGAATCACCACACGCTCAGGCTTCACCAACACCACCACCAGTACAGCCCCAAAATGAAGAGCAAGAAGATATAACTGTAGGTAGTGGTAGAGCATCAAATTCAACTTCAAGAGCATCTAATTCAATTCGGAGTGAGGAGCCCCAAAATGAACTAATTGTACTACATTTGGATAATTTAAGATGTAACTGTA]

[+] EMBL AK063468             [TCGCTCCACCAGCGGCCGCACCAGAAGCCGCCGGCGACCGACTCGCCCAAAACCCTCGCGCCGGCGGCCGGGCCACGGCGCGGCGTGCCGCCCCTACCCCCATCCTATCGCGGCCTCGCCGCCGCCACCGGTGTGGCCGCGCCATGTTCCCCGGCCCCTCCTCCTCATCCGCCGCCGCCGGCCCCGGGTTCACCGAGAAGAACGGGCTCCATGTCGATCCCATGGCCGCCGCTGCCTGGAGCGGTGGGCGCACCAACGGCAAGGAGGATGCGGAGATGGTGCTTGCCGACCAGGAGGAGCTCGCCACTCCGAGCGCATCGGCCGGTGTTGGCGGACGCGAAGGGAGGCGGCGACGCGAGTGGATTGGGGGAGGAGGGAGGGGAGGAGCAAGTGGGGGAGCGGCGGGGGCCAGCGCCGGCGCCGGAGCCGGAGTCGATGCGGAGGGGCGCTAGAGCCGATGCCGAAGACAGAGAGAGCACCAACGGTCGTTAAATCCCCTCCTCGCCGGCGAGACTCTCCCTTCAACTCATCGATCTCTCGCTCTCCACTTCATCTCGCACTCTCTCAGCCAACGATTCCTCGCAAATCCTTGAAGAGATCGTGAGAAAGCTTCTTCTTGCTTGTGCTTGCGGCAATGGCGGGGGTGCACACGCACAGGGCATTCCTGCTCTGCAACTACCTGCTTCTTGGCGTTTCTGGATCGATTCGATCTGGTCAAAGAGATAAGAGAGAAGGGTATTTTGGTCAGGACAAAAAAATAAAATAGAGTAAAATCATTTCTATTAAAAAAAGACCAAAATAGCATTTTAGTGAACACTTTTAGGATTGCATTATCCAGCGAAACCATTTTACGACAGTAGAATCGCAATTTTCTCGTCTCTAGGGTTCCTCTTTTCCCAATCCCTTTCTCAGTTTCTCGTGCACTGCGGCGGCCGGCGGTGGTGCCGTGGTGGCGACTGGCAATGGGCGCCGGGCGGCGGCCGGCGGGTCGGCGATTCGGCATGGGTTCTGTGGCGCTGGCAGGCCAGCCCGGCAGCAACAAGGCAGCTGCTCAGCTTGGTAGCTCCTAGTCCTCAGCTCAGTCGCTCAGCAGTCCATCCAGCTGCAGGCAGTAGGCACTTAGGCAGAGGTCAAGTTGAATTAATTTGTCAGATATAAAAAGGAACAACAGAAATATGGGCATACTTTCTTTATTGAGCAAGGTCCCTAATTCAGATTCTGCATCTCCTAGGACAGGGCTTCACATTTCTCATGGGGTAACTATAGGAAGGAAGAGTAACTGAAGAAACTCGAGAAAATGAGACTTTGCAATTGGTGTTGTTTTCTTCTTCTTCAATCCCAACAGAGGAATCACCACACGCTCAGGCTTCACCAACACCACCACCAGTACAGCCCCAAAATGAAGAGCAAGAAGATATAACTGTAGGTAGTGGTAGAGCATCAAATTCAACTTCAAGAGCATCTAATTCAATTCGGAGTGAGGAGCCCCAAAATGAACTAATTGTACTACATTTGGATAATTTAAGATGTAACTGTA]




>consensus_313#0
TCGCTCCACCAGCGGCCGCACCAGAAGCCGCCGGCGACCGACTCGCCCAAAACCCTCGCG
CCGGCGGCCGGGCCACGGCGCGGCGTGCCGCCCCTACCCCCATCCTATCGCGGCCTCGCC
GCCGCCACCGGTGTGGCCGCGCCATGTTCCCCGGCCCCTCCTCCTCATCCGCCGCCGCCG
GCCCCGGGTTCACCGAGAAGAACGGGCTCCATGTCGATCCCATGGCCGCCGCTGCCTGGA
GCGGTGGGCGCACCAACGGCAAGGAGGATGCGGAGATGGTGCTTGCCGACCAGGAGGAGC
TCGCCACTCCGAGCGCATCGGCCGGTGTTGGCGGACGCGAAGGGAGGCGGCGACGCGAGT
GGATTGGGGGAGGAGGGAGGGGAGGAGCAAGTGGGGGAGCGGCGGGGGCCAGCGCCGGCG
CCGGAGCCGGAGTCGATGCGGAGGGGCGCTAGAGCCGATGCCGAAGACAGAGAGAGCACC
AACGGTCGTTAAATCCCCTCCTCGCCGGCGAGACTCTCCCTTCAACTCATCGATCTCTCG
CTCTCCACTTCATCTCGCACTCTCTCAGCCAACGATTCCTCGCAAATCCTTGAAGAGATC
GTGAGAAAGCTTCTTCTTGCTTGTGCTTGCGGCAATGGCGGGGGTGCACACGCACAGGGC
ATTCCTGCTCTGCAACTACCTGCTTCTTGGCGTTTCTGGATCGATTCGATCTGGTCAAAG
AGATAAGAGAGAAGGGTATTTTGGTCAGGACAAAAAAATAAAATAGAGTAAAATCATTTC
TATTAAAAAAAGACCAAAATAGCATTTTAGTGAACACTTTTAGGATTGCATTATCCAGCG
AAACCATTTTACGACAGTAGAATCGCAATTTTCTCGTCTCTAGGGTTCCTCTTTTCCCAA
TCCCTTTCTCAGTTTCTCGTGCACTGCGGCGGCCGGCGGTGGTGCCGTGGTGGCGACTGG
CAATGGGCGCCGGGCGGCGGCCGGCGGGTCGGCGATTCGGCATGGGTTCTGTGGCGCTGG
CAGGCCAGCCCGGCAGCAACAAGGCAGCTGCTCAGCTTGGTAGCTCCTAGTCCTCAGCTC
AGTCGCTCAGCAGTCCATCCAGCTGCAGGCAGTAGGCACTTAGGCAGAGGTCAAGTTGAA
TTAATTTGTCAGATATAAAAAGGAACAACAGAAATATGGGCATACTTTCTTTATTGAGCA
AGGTCCCTAATTCAGATTCTGCATCTCCTAGGACAGGGCTTCACATTTCTCATGGGGTAA
CTATAGGAAGGAAGAGTAACTGAAGAAACTCGAGAAAATGAGACTTTGCAATTGGTGTTG
TTTTCTTCTTCTTCAATCCCAACAGAGGAATCACCACACGCTCAGGCTTCACCAACACCA
CCACCAGTACAGCCCCAAAATGAAGAGCAAGAAGATATAACTGTAGGTAGTGGTAGAGCA
TCAAATTCAACTTCAAGAGCATCTAATTCAATTCGGAGTGAGGAGCCCCAAAATGAACTA
ATTGTACTACATTTGGATAATTTAAGATGTAACTGTA

consensusID : consensus_313#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence 
                              [CACCNGAGAAGAACGGGCTCCACGTCGATCCCACGGCCGCCGCCGCCCGGACCGGTGGGCGCACCAACGGCGAGGAGGATGCGGAGATGGTGCTCGCCGACCAGGAGGAGCTCGCCGCTCCGAGCGCATCGGCCCCGGCGGGGGTCGCCGCCAACCTCTTCCGGAAGAAGGCCACACTCCCCCAGCCATCCGCCGCCCGCAAGCCCCTCCGAATCAAAATAGGTCAGCCAAAATTGCCAACAAACTTTGAGGAGGATACATGGGCTATTTTGAAAGATGCTATTACAGCTATATTTCTAAAACAGAAACTTTCGTGCGATGTTGAAAAACTTTACCAGGCTGCAGGTGACCTTTGTCTACACAAGCTAGGCGCAAATCTATACGAACGCATAAAGAAAGAATGTG]

[+] EMBL AU174322             [CACCNGAGAAGAACGGGCTCCACGTCGATCCCACGGCCGCCGCCGCCCGGACCGGTGGGCGCACCAACGGCGAGGAGGATGCGGAGATGGTGCTCGCCGACCAGGAGGAGCTCGCCGCTCCGAGCGCATCGGCCCCGGCGGGGGTCGCCGCCAACCTCTTCCGGAAGAAGGCCACACTCCCCCAGCCATCCGCCGCCCGCAAGCCCCTCCGAATCAAAATAGGTCAGCCAAAATTGCCAACAAACTTTGAGGAGGATACATGGGCTATTTTGAAAGATGCTATTACAGCTATATTTCTAAAACAGAAACTTTCGTGCGATGTTGAAAAACTTTACCAGGCTGCAGGTGACCTTTGTCTACACAAGCTAGGCGCAAATCTATACGAACGCATAAAGAAAGAATGTG]




>consensus_313#1
CACCNGAGAAGAACGGGCTCCACGTCGATCCCACGGCCGCCGCCGCCCGGACCGGTGGGC
GCACCAACGGCGAGGAGGATGCGGAGATGGTGCTCGCCGACCAGGAGGAGCTCGCCGCTC
CGAGCGCATCGGCCCCGGCGGGGGTCGCCGCCAACCTCTTCCGGAAGAAGGCCACACTCC
CCCAGCCATCCGCCGCCCGCAAGCCCCTCCGAATCAAAATAGGTCAGCCAAAATTGCCAA
CAAACTTTGAGGAGGATACATGGGCTATTTTGAAAGATGCTATTACAGCTATATTTCTAA
AACAGAAACTTTCGTGCGATGTTGAAAAACTTTACCAGGCTGCAGGTGACCTTTGTCTAC
ACAAGCTAGGCGCAAATCTATACGAACGCATAAAGAAAGAATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_313#0      TCGCTCCACCAGCGGCCGCACCAGAAGCCGCCGGCGACCGACTCGCCCAAAACCCTCGCG 60
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      CCGGCGGCCGGGCCACGGCGCGGCGTGCCGCCCCTACCCCCATCCTATCGCGGCCTCGCC 120
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      GCCGCCACCGGTGTGGCCGCGCCATGTTCCCCGGCCCCTCCTCCTCATCCGCCGCCGCCG 180
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      GCCCCGGGTTCACCGAGAAGAACGGGCTCCATGTCGATCCCATGGCCGCCGCTGCCTGGA 240
consensus_313#1      ---------CACCNGAGAAGAACGGGCTCCACGTCGATCCCACGGCCGCCGCCGCCCGGA 51
                                 * ***************** ********** ********* *** ***

consensus_313#0      GCGGTGGGCGCACCAACGGCAAGGAGGATGCGGAGATGGTGCTTGCCGACCAGGAGGAGC 300
consensus_313#1      CCGGTGGGCGCACCAACGGCGAGGAGGATGCGGAGATGGTGCTCGCCGACCAGGAGGAGC 111
                      ******************* ********************** ****************

consensus_313#0      TCGCCACTCCGAGCGCATCGGCCGGTGTTGGCGGACGCGAAGGGAGGCGGCGACGCGAGT 360
consensus_313#1      TCGCCGCTCCGAGCGCATCGGCC----CCGGCGGGGGT------------CGCCGCCAAC 155
                     ***** *****************      *****  *             ** *** *  

consensus_313#0      GGATTGGGGGAGGAGGGAGGGGAGGAGCAAGTGGGGGAGCGGCGGGGGCCAGCGCCGGCG 420
consensus_313#1      CTCTTCCGGAAGAAGGCC----ACACTCCCCCAGCCATCCGCCGCCCGCAAGCCCCTCCG 211
                        **  ** ** ***      *    *     *     ** **   ** *** **  **

consensus_313#0      CCGGAGCCGGAGTCGATGCGGAGGGGCGCTAGAGCCGATGCCGAAGACAGAGAGAGCACC 480
consensus_313#1      AATCAAAATAGGTCAGCCAAAATTGCCAACAAACTTTGAGGAGGATACATGGGCTATTTT 271
                         *      ***       *  * *   * *      *  * * ***  *        

consensus_313#0      AACGGTCG---TTAAATCCCCTCCTCGCCGGCGAGACTCTCCCTTCAACTCATCGATCTC 537
consensus_313#1      GAAAGATGCTATTACAGCTATATTTCTAAAACAGAAACTTTCGTGCGAT--GTTGAAAAA 329
                      *  *  *   *** * *      **     *   *   * * * * *    * **    

consensus_313#0      TCGCTCTCCACTTCATCTCGCACTCTCTCAGCCAACGATTCCTCGCAAATCCTTGAAGAG 597
consensus_313#1      CTTTACCAGGCTGCAGGTGACCTTTGTCTACACAA--GCTAGGCGCAAATCTATACGAAC 387
                          *    ** **  *  *  *     *  ***    *   ********  *    * 

consensus_313#0      ATCGTGAGAAAGCTTCTTCTTGCTTGTGCTTGCGGCAATGGCGGGGGTGCACACGCACAG 657
consensus_313#1      GCATAAAGAAAGAATGTG------------------------------------------ 405
                           ******  * *                                           

consensus_313#0      GGCATTCCTGCTCTGCAACTACCTGCTTCTTGGCGTTTCTGGATCGATTCGATCTGGTCA 717
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      AAGAGATAAGAGAGAAGGGTATTTTGGTCAGGACAAAAAAATAAAATAGAGTAAAATCAT 777
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      TTCTATTAAAAAAAGACCAAAATAGCATTTTAGTGAACACTTTTAGGATTGCATTATCCA 837
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      GCGAAACCATTTTACGACAGTAGAATCGCAATTTTCTCGTCTCTAGGGTTCCTCTTTTCC 897
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      CAATCCCTTTCTCAGTTTCTCGTGCACTGCGGCGGCCGGCGGTGGTGCCGTGGTGGCGAC 957
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      TGGCAATGGGCGCCGGGCGGCGGCCGGCGGGTCGGCGATTCGGCATGGGTTCTGTGGCGC 1017
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      TGGCAGGCCAGCCCGGCAGCAACAAGGCAGCTGCTCAGCTTGGTAGCTCCTAGTCCTCAG 1077
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      CTCAGTCGCTCAGCAGTCCATCCAGCTGCAGGCAGTAGGCACTTAGGCAGAGGTCAAGTT 1137
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      GAATTAATTTGTCAGATATAAAAAGGAACAACAGAAATATGGGCATACTTTCTTTATTGA 1197
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      GCAAGGTCCCTAATTCAGATTCTGCATCTCCTAGGACAGGGCTTCACATTTCTCATGGGG 1257
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      TAACTATAGGAAGGAAGAGTAACTGAAGAAACTCGAGAAAATGAGACTTTGCAATTGGTG 1317
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      TTGTTTTCTTCTTCTTCAATCCCAACAGAGGAATCACCACACGCTCAGGCTTCACCAACA 1377
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      CCACCACCAGTACAGCCCCAAAATGAAGAGCAAGAAGATATAACTGTAGGTAGTGGTAGA 1437
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      GCATCAAATTCAACTTCAAGAGCATCTAATTCAATTCGGAGTGAGGAGCCCCAAAATGAA 1497
consensus_313#1      ------------------------------------------------------------
                                                                                 

consensus_313#0      CTAATTGTACTACATTTGGATAATTTAAGATGTAACTGTA 1537
consensus_313#1      ----------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)