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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1376 fasta sequence
[ACTCCTCACTTCAACCCGCACTCCGGCCACCGTCGGCTGCCGCCGATCCCTCCGCCGCCGACGCCGGACGCCGCCAGTGCCCAGGGAGTTGGTAGCATGGAAGCCGGAGGCACCGCCGCCGGCACACGAGGAGGAGGAGGAGGGGCGGAGCTGTGCCGGCAGATGGCGGCGCAGCTGGCGGCGTACCAGCGCGGGATGGCCGTCGAAAGGGAGCGCCAAGCTTCCACCTCCGCCAACTACCGCGCCGCGCTTCTCTCCTCCCGCTCCATCGCCCGTCAAACCATCTCCCGCCAAGAGGAACTGAGTGGACTCAACCTTCAGTTGCGGAATTTGGAAGATGGTCTTGCAGAAGCATTGTCTGTTAAGGCCGGCAAGGAGTCAAAGTACCAACTTACCAAAGAGACGATTTCAAGCACTGCGGCTATAAATGAGAAGCTTGAGGGCATGGTTACAGATCAGCGGAACAAGAGAGATCACCATGCTGCAGTCATATCGAATCACCTCGAGGCTGTTGAAGCTCTTGAAGCAAAGTTTATTGAGGATGAAACACGGATGAAGAAAATAGAAGAAGCTGTAATCTGGTACAGCAAGTTCCTTGGTTTCCAGGTTGTTGGAGGAGAAGGTGTAAAGTTCATCTTCAACAAAATAGACTTGCAAAGCCCTGATAAGGAGTACTCGGTTACCTTAAAGCTTGCCAAAGATCGATATAACTTACTTCAATGTGATCCAAGTATAAAAGATTCTGAAGAGTTGATGAAGGATTTGAACCTCACTAACGATCTGTTCAAGTTTGTAAGAATCGTCAGAGAAAGGTTCCAGGCTGAGGCTGCTACTGTGAATGGAGGTCTTCTCATGAGTTCAGTTGTTTGTCCAGATGCTTCCTCTATACCAGTTTCACCTCCAATGTTAATGCCACTTGACTCTAGAACTGAAAATGTTCTTGATAAGAGTCTTTCTCAGAGTAAGAACAAGGGGCGGAATCTACCTTCTAAAAGAGGAGCTGCTGCCCTATCAGCAGCATCTCCTGGTTCTGCGGTATCTATTGTGCGGCGCTCCCCACATTTTGTGGGAATCAGGTGAGTTGTCAGCTGAGGCAATTTGTTGTCACCTGAGCAGACTGGCTCTTTAACTGATCAAGCATTGTAGATCCAAGAAAGTAACTAAAGTAATATCTTCAAATAATTCATCAACTGTCAGGGAACTCATTGCCGGTTGTATGTATGATTCAAATTATCTTGTCAGATCTTGTACTTGATGGCGTTGTGTGTTAGTACTTCCCTTATCAAATGAATCGCTTGTTTAGCGAGCAGTGATCTCATGGTGTACTTCTATCCAATGTACTGAACTGTTATAGTGTTATTATGGGATTTTCTCTC]
[+] EMBL AK102486 [ACTCCTCACTTCAACCCGCACTCCGGCCACCGTCGGCTGCCGCCGATCCCTCCGCCGCCGACGCCGGACGCCGCCAGTGCCCAGGGAGTTGGTAGCATGGAAGCCGGAGGCACCGCCGCCGGCACACGAGGAGGAGGAGGAGGGGCGGAGCTGTGCCGGCAGATGGCGGCGCAGCTGGCGGCGTACCAGCGCGGGATGGCCGTCGAAAGGGAGCGCCAAGCTTCCACCTCCGCCAACTACCGCGCCGCGCTTCTCTCCTCCCGCTCCATCGCCCGTCAAACCATCTCCCGCCAAGAGGAACTGAGTGGACTCAACCTTCAGTTGCGGAATTTGGAAGATGGTCTTGCAGAAGCATTGTCTGTTAAGGCCGGCAAGGAGTCAAAGTACCAACTTACCAAAGAGACGATTTCAAGCACTGCGGCTATAAATGAGAAGCTTGAGGGCATGGTTACAGATCAGCGGAACAAGAGAGATCACCATGCTGCAGTCATATCGAATCACCTCGAGGCTGTTGAAGCTCTTGAAGCAAAGTTTATTGAGGATGAAACACGGATGAAGAAAATAGAAGAAGCTGTAATCTGGTACAGCAAGTTCCTTGGTTTCCAGGTTGTTGGAGGAGAAGGTGTAAAGTTCATCTTCAACAAAATAGACTTGCAAAGCCCTGATAAGGAGTACTCGGTTACCTTAAAGCTTGCCAAAGATCGATATAACTTACTTCAATGTGATCCAAGTATAAAAGATTCTGAAGAGTTGATGAAGGATTTGAACCTCACTAACGATCTGTTCAAGTTTGTAAGAATCGTCAGAGAAAGGTTCCAGGCTGAGGCTGCTACTGTGAATGGAGGTCTTCTCATGAGTTCAGTTGTTTGTCCAGATGCTTCCTCTATACCAGTTTCACCTCCAATGTTAATGCCACTTGACTCTAGAACTGAAAATGTTCTTGATAAGAGTCTTTCTCAGAGTAAGAACAAGGGGCGGAATCTACCTTCTAAAAGAGGAGCTGCTGCCCTATCAGCAGCATCTCCTGGTTCTGCGGTATCTATTGTGCGGCGCTCCCCACATTTTGTGGGAATCAGGTGAGTTGTCAGCTGAGGCAATTTGTTGTCACCTGAGCAGACTGGCTCTTTAACTGATCAAGCATTGTAGATCCAAGAAAGTAACTAAAGTAATATCTTCAAATAATTCATCAACTGTCAGGGAACTCATTGCCGGTTGTATGTATGATTCAAATTATCTTGTCAGATCTTGTACTTGATGGCGTTGTGTGTTAGTACTTCCCTTATCAAATGAATCGCTTGTTTAGCGAGCAGTGATCTCATGGTGTACTTCTATCCAATGTACTGAACTGTTATAGTGTTATTATGGGATTTTCTCTC]
consensusID : consensus_3133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence
[CAGAGGACGAGACAAGGGGTTAGCGAGCAGTGATCTCATGGTGTACTTCTATCCAATGTACTGTACTGTTATAGTGTTATTATGGGATTTTCTCTCTCTTTTTTTTAAGAAAAAAAAAAAAAAAA]
[+] EMBL CA765574 [CAGAGGACGAGACAAGGGGTTAGCGAGCAGTGATCTCATGGTGTACTTCTATCCAATGTACTGTACTGTTATAGTGTTATTATGGGATTTTCTCTCTCTTTTTTTTAAGAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3133#0 ACTCCTCACTTCAACCCGCACTCCGGCCACCGTCGGCTGCCGCCGATCCCTCCGCCGCCG 60
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 ACGCCGGACGCCGCCAGTGCCCAGGGAGTTGGTAGCATGGAAGCCGGAGGCACCGCCGCC 120
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GGCACACGAGGAGGAGGAGGAGGGGCGGAGCTGTGCCGGCAGATGGCGGCGCAGCTGGCG 180
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GCGTACCAGCGCGGGATGGCCGTCGAAAGGGAGCGCCAAGCTTCCACCTCCGCCAACTAC 240
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 CGCGCCGCGCTTCTCTCCTCCCGCTCCATCGCCCGTCAAACCATCTCCCGCCAAGAGGAA 300
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 CTGAGTGGACTCAACCTTCAGTTGCGGAATTTGGAAGATGGTCTTGCAGAAGCATTGTCT 360
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GTTAAGGCCGGCAAGGAGTCAAAGTACCAACTTACCAAAGAGACGATTTCAAGCACTGCG 420
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GCTATAAATGAGAAGCTTGAGGGCATGGTTACAGATCAGCGGAACAAGAGAGATCACCAT 480
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GCTGCAGTCATATCGAATCACCTCGAGGCTGTTGAAGCTCTTGAAGCAAAGTTTATTGAG 540
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GATGAAACACGGATGAAGAAAATAGAAGAAGCTGTAATCTGGTACAGCAAGTTCCTTGGT 600
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 TTCCAGGTTGTTGGAGGAGAAGGTGTAAAGTTCATCTTCAACAAAATAGACTTGCAAAGC 660
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 CCTGATAAGGAGTACTCGGTTACCTTAAAGCTTGCCAAAGATCGATATAACTTACTTCAA 720
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 TGTGATCCAAGTATAAAAGATTCTGAAGAGTTGATGAAGGATTTGAACCTCACTAACGAT 780
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 CTGTTCAAGTTTGTAAGAATCGTCAGAGAAAGGTTCCAGGCTGAGGCTGCTACTGTGAAT 840
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GGAGGTCTTCTCATGAGTTCAGTTGTTTGTCCAGATGCTTCCTCTATACCAGTTTCACCT 900
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 CCAATGTTAATGCCACTTGACTCTAGAACTGAAAATGTTCTTGATAAGAGTCTTTCTCAG 960
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 AGTAAGAACAAGGGGCGGAATCTACCTTCTAAAAGAGGAGCTGCTGCCCTATCAGCAGCA 1020
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 TCTCCTGGTTCTGCGGTATCTATTGTGCGGCGCTCCCCACATTTTGTGGGAATCAGGTGA 1080
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 GTTGTCAGCTGAGGCAATTTGTTGTCACCTGAGCAGACTGGCTCTTTAACTGATCAAGCA 1140
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 TTGTAGATCCAAGAAAGTAACTAAAGTAATATCTTCAAATAATTCATCAACTGTCAGGGA 1200
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 ACTCATTGCCGGTTGTATGTATGATTCAAATTATCTTGTCAGATCTTGTACTTGATGGCG 1260
consensus_3133#1 ------------------------------------------------------------
consensus_3133#0 TTGTGTGTTAGTACTTCCCTTATCAAATGAATCGCTTGTTTAGCGAGCAGTGATCTCATG 1320
consensus_3133#1 --------------------CAGAGGACGAGACAAGGGGTTAGCGAGCAGTGATCTCATG 40
* * ** * * *********************
consensus_3133#0 GTGTACTTCTATCCAATGTACTGAACTGTTATAGTGTTATTATGGGATTTTCTCTC---- 1376
consensus_3133#1 GTGTACTTCTATCCAATGTACTGTACTGTTATAGTGTTATTATGGGATTTTCTCTCTCTT 100
*********************** ********************************
consensus_3133#0 -------------------------
consensus_3133#1 TTTTTTAAGAAAAAAAAAAAAAAAA 125
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||