These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 855 fasta sequence [CACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTTCCTCCGCCGCCAGCGCCGGCTCTGCTTCTCATCTCCTCCCTCCGGCGCCGGCAGCTGTGGTTGCCGGCTCGCGCGGCGACCGGCAGCTGTGGATGGCAGGAATCCATCCGAGAGATCAGCGTTTCGTCTTCAACGCGAGGCAGTTGGACGACAACCAAAGCTTGGCCGATTGCAACATTACCCATAATTCCACGATACACTTCGTATTCGGCATTCCCTGCTTTTACGCTACCCCGGCATACGAACAGTTCAACCGCCTTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGTCGGATTCGAGTTCGACGAGCAAAAGAGACATCGCCCCGGCAAATGTCAAAACAGTGCACTGCCCAGATTGCCAGGTCCAAGCTAACGTGTACTACTGCAACACCAAGGAGGATAACGAAGGCTGTGTGTTCTACAGGTGCCCTTATTTCTCGATACACACAGGCTGGTGGCTGCCAGTTCGTCCAGTGCGCAGACACGGTTGATGAAGGACTGCAGAAACGAGTGGAACATGCTACTCAGGAAACATCGTGTCCCCAAGGGAATAACATGTCGCTAATGGAGGAGAGGCTGCAGAGGATTCTTGACCATATGAGGTGGATGGAACAGTTCTTGATTGTGTGCATCATCGCTCTAGCGTATGTTGTATTTGTCAAGTAGTTTAGGTAGAGTATCAATTAGTGTGTAATGAATGGTCAATAATGACGCACTTCTGAACCTTGAAATCGATCCACAATTAGGT] [+] EMBL AK108532 [CACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTTCCTCCGCCGCCAGCGCCGGCTCTGCTTCTCATCTCCTCCCTCCGGCGCCGGCAGCTGTGGTTGCCGGCTCGCGCGGCGACCGGCAGCTGTGGATGGCAGGAATCCATCCGAGAGATCAGCGTTTCGTCTTCAACGCGAGGCAGTTGGACGACAACCAAAGCTTGGCCGATTGCAACATTACCCATAATTCCACGATACACTTCGTATTCGGCATTCCCTGCTTTTACGCTACCCCGGCATACGAACAGTTCAACCGCCTTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGTCGGATTCGAGTTCGACGAGCAAAAGAGACATCGCCCCGGCAAATGTCAAAACAGTGCACTGCCCAGATTGCCAGGTCCAAGCTAACGTGTACTACTGCAACACCAAGGAGGATAACGAAGGCTGTGTGTTCTACAGGTGCCCTTATTTCTCGATACACACAGGCTGGTGGCTGCCAGTTCGTCCAGTGCGCAGACACGGTTGATGAAGGACTGCAGAAACGAGTGGAACATGCTACTCAGGAAACATCGTGTCCCCAAGGGAATAACATGTCGCTAATGGAGGAGAGGCTGCAGAGGATTCTTGACCATATGAGGTGGATGGAACAGTTCTTGATTGTGTGCATCATCGCTCTAGCGTATGTTGTATTTGTCAAGTAGTTTAGGTAGAGTATCAATTAGTGTGTAATGAATGGTCAATAATGACGCACTTCTGAACCTTGAAATCGATCCACAATTAGGT] consensusID : consensus_3140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TCTCTTTTTCTTCTCCCCGGTGCGCACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTCGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTCCCTCCGCCGCCGGCACCGGCTCTGCTTCTCCTCTCCTCCCTCCGGCGCCGGCAGCCGCGGTTGCCGGCTCGCGCGGCGACCGACGCGCGCGGGAGGCGCCGGATCTCCTCCCTCCGCCGCCGCCGCCGGCTCTGCTTCTCTTCTCCTCCCTCCGGTGCCGGCAGCCACGATTGCCGGCTCGCGCGGCGACCGACGTGCGCGGGAAGCGTCCTCGGGAGGCTCCGGCGCCAGCGGAAGACGATGCGCCGATGGGATGTGGTGGCCGCGGCGGCGGATGTGGTGGTCGACGCCAGATCTCCTCTCCCCGCCGCCGCCGCCGCGAGGAGGAGGAGGTAGTGTTAGTCAAGGAGGACGAGCAGAAGCAGAAGCACTGCGGCCGCGTTCTTTGATCTTTTTTCCCAACTCGATTCGATCGATCACATCACTTGCTAATAACAAGATGGGATTAGCTGTTCTTATCTTTGCATGTTCTGTTCTCTA] [+] EMBL AK107709 [TCTCTTTTTCTTCTCCCCGGTGCGCACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTCGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTCCCTCCGCCGCCGGCACCGGCTCTGCTTCTCCTCTCCTCCCTCCGGCGCCGGCAGCCGCGGTTGCCGGCTCGCGCGGCGACCGACGCGCGCGGGAGGCGCCGGATCTCCTCCCTCCGCCGCCGCCGCCGGCTCTGCTTCTCTTCTCCTCCCTCCGGTGCCGGCAGCCACGATTGCCGGCTCGCGCGGCGACCGACGTGCGCGGGAAGCGTCCTCGGGAGGCTCCGGCGCCAGCGGAAGACGATGCGCCGATGGGATGTGGTGGCCGCGGCGGCGGATGTGGTGGTCGACGCCAGATCTCCTCTCCCCGCCGCCGCCGCCGCGAGGAGGAGGAGGTAGTGTTAGTCAAGGAGGACGAGCAGAAGCAGAAGCACTGCGGCCGCGTTCTTTGATCTTTTTTCCCAACTCGATTCGATCGATCACATCACTTGCTAATAACAAGATGGGATTAGCTGTTCTTATCTTTGCATGTTCTGTTCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3140#0 ------------------------CACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCA 36 consensus_3140#1 TCTCTTTTTCTTCTCCCCGGTGCGCACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCA 60 ************************************ consensus_3140#0 CCGCTT-GACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTTCCTCCGCCG 95 consensus_3140#1 CCGCTTCGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTCCCTCCGCCG 120 ****** ******************************************* ********* consensus_3140#0 CCAGCGCCGGCTCTGCTTCTCATCTCCTCCCTCCGGCGCCGGCAGCTGTGGTTGCCGGCT 155 consensus_3140#1 CCGGCACCGGCTCTGCTTCTCCTCTCCTCCCTCCGGCGCCGGCAGCCGCGGTTGCCGGCT 180 ** ** *************** ************************ * *********** consensus_3140#0 CGCGCGGCGACCGGCAGCTGTGGATGGCAGGAATCCATCCGAGAGATCAGCGTTTCGTCT 215 consensus_3140#1 CGCGCGGCGACCGACGCGCGCGGGAGGCG----------CCGGATCTCCTCCCTCCGCCG 230 ************* * * ** *** * ** ** * * ** * consensus_3140#0 TCAACGCGAGGCAGTTGGACGACAACCAAAGCTTGGCCGATTGCAACATTACCCATAATT 275 consensus_3140#1 CCGCCGC----CGGCTCTGCTTCTCTTCTCCTCCCTCCGGTGCCGGCA---GCCACGATT 283 * *** * * * * * *** * * ** *** *** consensus_3140#0 CCACGATACACTTCGTATTCGGCATTCCCTGCTTTTACGCTACCCCGGCATACGAACAGT 335 consensus_3140#1 GC-CGGCTCGCGCGGCGACCGACGTGCGCGGG----AAGCGTCCTCGGGAGGCTCCGGCG 338 * ** * * * ** * * * * * * ** ** *** * * consensus_3140#0 TCAACCGCCTTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGT 395 consensus_3140#1 CCAGCGGAAGACGATGCGCCGATGGGATGTGGT-GGCCGCGGCG-GCGGATGTGGT-GGT 395 ** * * * * * ** * * * * ** ** ** * * * *** consensus_3140#0 CGGATTCGAGTTCGACGAGCAAAAGAGACATCGCCCCGGCAAATGTCAAAACAGTGCACT 455 consensus_3140#1 CG-ACGCCAGATCTCCTCTCCCCGCCGCCGCCGCCGCGA-GGAGGAGGAGGTAGTGT-TA 452 ** * * ** ** * * * * **** ** * * * **** consensus_3140#0 GCCCAGATTGCCAGGTCCAAGCTAACGTG-TACTACTGCAACACCAAGGAGGATAACGAA 514 consensus_3140#1 GTCAAGGAGGACGAGCAGAAGCAGAAGCACTGCGGCCGCGTTCTTTGATCTTTTTTCCCA 512 * * ** * * * **** * * * * * ** * * * consensus_3140#0 GGCTGTGTGTTCTACAGGTGCCCTTATTTCTCGATACACACAGGCTGGTGGCTGCCAGTT 574 consensus_3140#1 ACTCG---ATTCGATCGATCACATCACTTGCTAATA---ACAAGATGG-GATTAGCTGTT 565 * *** * * * * * * ** *** *** * *** * * * *** consensus_3140#0 CGTCCAGTGCGCAGACACGGTTGATGAAGGACTGCAGAAACGAGTGGAACATGCTACTCA 634 consensus_3140#1 CTTATC-TTTGCATGTTCTGTTCTCTA--------------------------------- 591 * * * *** * *** * consensus_3140#0 GGAAACATCGTGTCCCCAAGGGAATAACATGTCGCTAATGGAGGAGAGGCTGCAGAGGAT 694 consensus_3140#1 ------------------------------------------------------------ consensus_3140#0 TCTTGACCATATGAGGTGGATGGAACAGTTCTTGATTGTGTGCATCATCGCTCTAGCGTA 754 consensus_3140#1 ------------------------------------------------------------ consensus_3140#0 TGTTGTATTTGTCAAGTAGTTTAGGTAGAGTATCAATTAGTGTGTAATGAATGGTCAATA 814 consensus_3140#1 ------------------------------------------------------------ consensus_3140#0 ATGACGCACTTCTGAACCTTGAAATCGATCCACAATTAGGT 855 consensus_3140#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||