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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2340 fasta sequence
[CGAGGCGGCGGAGGTTGCGGCGGGGATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGATCAACCTGGGCCTGGCGCTGGTGGCGCTCTCGCTCTTCTCCTTGCTCAAGAAGCAGCCCGGCAACGCGCCGGTGTACCTTGCGCGGCGGATGGCCGCCGGTGGCGGTGGGGGCGGGCTGCCGCTCGGCCACGGGCGGTTGACCCCGTCGTTCCGGTGGATCCGCGCCGCGCTCCGGCTCTCCGAGGACGACGTGCTGCGGCGCCACGGCCTCGACGCGCTCGTCGTCGTCCGCCTCTTCAAATTCGGGATCAAGTGCTTCGCTGTTTGCTCAATCGTTGGATTGTTCATCCTTGCACCAACAAATTATTCCTGTGAAGGTCTACAAGACACCAAAAGGTCAAATTCAATGGAACTTTTCACGGTATCCAATGTGGCAAGGGGTTCTAACAGGCTTTGGGTGCATTTTGCATGCCTCTGCTTCATATCATTCTATGTGGTGTATTTGCTTCATAAGGAGCACAAAGAAATGTCCAGCAGAAGAATTGCACATTTGAAGTATCACAGGAAACGGCCTGACCAATATACCATTTTAGTTCGAGGAATTCCACTATGCCCAGATCATGGAACTTATGGGTGTTATGCTGACCACTTCTTCTCAAAGCACTACCGAACATACCAATCGTATCACATAGTACACGACATTGGAAACATCAAGGCACTTCAGAAGTTGGCATCCTCCCTTGAGGACAAGATAAAGAGGAAAAGAGAAACCAGAAGATGTAACTTTTGGAAGTGGATCTGGTTTAAGTTGACATTAGAAGCGATAGATACTCGCAAACTGGAAGAAAAACTGAAGAACGTCCATCACTCTATCCGCCTCCTACAGTGTGAAAATATGCTTAAACGGAAGGAATTACCGGTTGCTTTTGTCTCATTCAAATCACAGCTGGATGCTGCCCAAGCTGCCGAAATGCAACAGCATGTCAATCCTCTGTCCTTGGTGACAACATATGCTCCTGAACCACCTGATGCACTATGGACAAATCTGGCTATTCCTTTCTGCCGTATTGCTATATACAAACTTGGTGTCTTCATTGCTGCGTTTCTGCTAATAGTGTTCTTCTCCATCCCTGTCACAGCTGTGCAAGGGATAGTACAATTTGAGAAAATTAAAATATGGTTTCCACCGGCTAGAGCTGTGGAACTTATACCAGGTTTGAATTCTGTCGTAACTGGGTATCTTCCAAGCATGATCTTGAATGGCTTTATCTACTTGATTCCCTTCGCGATGCTTGGCATGGCATCATTTGAGGGATGCATTGCAAAAAGTCAGAAGGAAATCAAGGCCTGCAACATGGTATTTTACTTCTTGTTAGGGAATGTTTTCTTTTTGAGCATTCTTTCTGGTTCTCTACTCCACCAGATAGGAGAATCCTTTACACATCCAAAAGACATACCTAGCCGTCTGGCCCGTGCTGTTTCTGCACAGTCAGATTTCTTCATCACATACATTTTGACCGACGGCATGTCAGGGTTTTCCTTGGAGGTTCTTCAGTTTGGTTTGCTTACATGGCATTTCTTCAAGGCACATTCAATTGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACAAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACCTTCCTTCATCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTCCTGTTACATAATAAGAACCAGGCAAATTTTCGTGTGAAGTTTGGCTGTTGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGTTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGTGAAAATTACAAATTCAAACAA]
[+] EMBL AK101121 [CGAGGCGGCGGAGGTTGCGGCGGGGATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGATCAACCTGGGCCTGGCGCTGGTGGCGCTCTCGCTCTTCTCCTTGCTCAAGAAGCAGCCCGGCAACGCGCCGGTGTACCTTGCGCGGCGGATGGCCGCCGGTGGCGGTGGGGGCGGGCTGCCGCTCGGCCACGGGCGGTTGACCCCGTCGTTCCGGTGGATCCGCGCCGCGCTCCGGCTCTCCGAGGACGACGTGCTGCGGCGCCACGGCCTCGACGCGCTCGTCGTCGTCCGCCTCTTCAAATTCGGGATCAAGTGCTTCGCTGTTTGCTCAATCGTTGGATTGTTCATCCTTGCACCAACAAATTATTCCTGTGAAGGTCTACAAGACACCAAAAGGTCAAATTCAATGGAACTTTTCACGGTATCCAATGTGGCAAGGGGTTCTAACAGGCTTTGGGTGCATTTTGCATGCCTCTGCTTCATATCATTCTATGTGGTGTATTTGCTTCATAAGGAGCACAAAGAAATGTCCAGCAGAAGAATTGCACATTTGAAGTATCACAGGAAACGGCCTGACCAATATACCATTTTAGTTCGAGGAATTCCACTATGCCCAGATCATGGAACTTATGGGTGTTATGCTGACCACTTCTTCTCAAAGCACTACCGAACATACCAATCGTATCACATAGTACACGACATTGGAAACATCAAGGCACTTCAGAAGTTGGCATCCTCCCTTGAGGACAAGATAAAGAGGAAAAGAGAAACCAGAAGATGTAACTTTTGGAAGTGGATCTGGTTTAAGTTGACATTAGAAGCGATAGATACTCGCAAACTGGAAGAAAAACTGAAGAACGTCCATCACTCTATCCGCCTCCTACAGTGTGAAAATATGCTTAAACGGAAGGAATTACCGGTTGCTTTTGTCTCATTCAAATCACAGCTGGATGCTGCCCAAGCTGCCGAAATGCAACAGCATGTCAATCCTCTGTCCTTGGTGACAACATATGCTCCTGAACCACCTGATGCACTATGGACAAATCTGGCTATTCCTTTCTGCCGTATTGCTATATACAAACTTGGTGTCTTCATTGCTGCGTTTCTGCTAATAGTGTTCTTCTCCATCCCTGTCACAGCTGTGCAAGGGATAGTACAATTTGAGAAAATTAAAATATGGTTTCCACCGGCTAGAGCTGTGGAACTTATACCAGGTTTGAATTCTGTCGTAACTGGGTATCTTCCAAGCATGATCTTGAATGGCTTTATCTACTTGATTCCCTTCGCGATGCTTGGCATGGCATCATTTGAGGGATGCATTGCAAAAAGTCAGAAGGAAATCAAGGCCTGCAACATGGTATTTTACTTCTTGTTAGGGAATGTTTTCTTTTTGAGCATTCTTTCTGGTTCTCTACTCCACCAGATAGGAGAATCCTTTACACATCCAAAAGACATACCTAGCCGTCTGGCCCGTGCTGTTTCTGCACAGTCAGATTTCTTCATCACATACATTTTGACCGACGGCATGTCAGGGTTTTCCTTGGAGGTTCTTCAGTTTGGTTTGCTTACATGGCATTTCTTCAAGGCACATTCAATTGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACAAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACCTTCCTTCATCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTCCTGTTACATAATAAGAACCAGGCAAATTTTCGTGTGAAGTTTGGCTGTTGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGTTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGTGAAAATTACAAATTCAAACAA]
consensusID : consensus_3178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence
[GACGAGACAAGGGGGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACCAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGTTAGGGCTGTTTGGGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACTTTCCTTCGTCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTTCTGTTACATAATAAGAACCAGGCAAATTTTTCGTGTGAAGTTTGGCTGTCGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGNTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGNGAAAATTACAAATTCAAACAATTTTTCTCTTATAAGTGATCAGGGGGATCTAACAAATGA]
[+] EMBL CA765805 [GACGAGACAAGGGGGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACCAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGTTAGGGCTGTTTGGGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACTTTCCTTCGTCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTTCTGTTACATAATAAGAACCAGGCAAATTTTTCGTGTGAAGTTTGGCTGTCGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGNTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGNGAAAATTACAAATTCAAACAATTTTTCTCTTATAAGTGATCAGGGGGATCTAACAAATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3178#0 CGAGGCGGCGGAGGTTGCGGCGGGGATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGAT 60
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 CAACCTGGGCCTGGCGCTGGTGGCGCTCTCGCTCTTCTCCTTGCTCAAGAAGCAGCCCGG 120
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 CAACGCGCCGGTGTACCTTGCGCGGCGGATGGCCGCCGGTGGCGGTGGGGGCGGGCTGCC 180
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 GCTCGGCCACGGGCGGTTGACCCCGTCGTTCCGGTGGATCCGCGCCGCGCTCCGGCTCTC 240
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 CGAGGACGACGTGCTGCGGCGCCACGGCCTCGACGCGCTCGTCGTCGTCCGCCTCTTCAA 300
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 ATTCGGGATCAAGTGCTTCGCTGTTTGCTCAATCGTTGGATTGTTCATCCTTGCACCAAC 360
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 AAATTATTCCTGTGAAGGTCTACAAGACACCAAAAGGTCAAATTCAATGGAACTTTTCAC 420
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 GGTATCCAATGTGGCAAGGGGTTCTAACAGGCTTTGGGTGCATTTTGCATGCCTCTGCTT 480
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 CATATCATTCTATGTGGTGTATTTGCTTCATAAGGAGCACAAAGAAATGTCCAGCAGAAG 540
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 AATTGCACATTTGAAGTATCACAGGAAACGGCCTGACCAATATACCATTTTAGTTCGAGG 600
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 AATTCCACTATGCCCAGATCATGGAACTTATGGGTGTTATGCTGACCACTTCTTCTCAAA 660
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 GCACTACCGAACATACCAATCGTATCACATAGTACACGACATTGGAAACATCAAGGCACT 720
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TCAGAAGTTGGCATCCTCCCTTGAGGACAAGATAAAGAGGAAAAGAGAAACCAGAAGATG 780
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TAACTTTTGGAAGTGGATCTGGTTTAAGTTGACATTAGAAGCGATAGATACTCGCAAACT 840
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 GGAAGAAAAACTGAAGAACGTCCATCACTCTATCCGCCTCCTACAGTGTGAAAATATGCT 900
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TAAACGGAAGGAATTACCGGTTGCTTTTGTCTCATTCAAATCACAGCTGGATGCTGCCCA 960
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 AGCTGCCGAAATGCAACAGCATGTCAATCCTCTGTCCTTGGTGACAACATATGCTCCTGA 1020
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 ACCACCTGATGCACTATGGACAAATCTGGCTATTCCTTTCTGCCGTATTGCTATATACAA 1080
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 ACTTGGTGTCTTCATTGCTGCGTTTCTGCTAATAGTGTTCTTCTCCATCCCTGTCACAGC 1140
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TGTGCAAGGGATAGTACAATTTGAGAAAATTAAAATATGGTTTCCACCGGCTAGAGCTGT 1200
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 GGAACTTATACCAGGTTTGAATTCTGTCGTAACTGGGTATCTTCCAAGCATGATCTTGAA 1260
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TGGCTTTATCTACTTGATTCCCTTCGCGATGCTTGGCATGGCATCATTTGAGGGATGCAT 1320
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TGCAAAAAGTCAGAAGGAAATCAAGGCCTGCAACATGGTATTTTACTTCTTGTTAGGGAA 1380
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TGTTTTCTTTTTGAGCATTCTTTCTGGTTCTCTACTCCACCAGATAGGAGAATCCTTTAC 1440
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 ACATCCAAAAGACATACCTAGCCGTCTGGCCCGTGCTGTTTCTGCACAGTCAGATTTCTT 1500
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 CATCACATACATTTTGACCGACGGCATGTCAGGGTTTTCCTTGGAGGTTCTTCAGTTTGG 1560
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TTTGCTTACATGGCATTTCTTCAAGGCACATTCAATTGGACATAGTGAGCAGCCATATCT 1620
consensus_3178#1 -----------------------GACGAGACAAGGGGGGACATAGTGAGCAGCCATATCT 37
* * ***********************
consensus_3178#0 TTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTT 1680
consensus_3178#1 TTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTT 97
************************************************************
consensus_3178#0 GGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGG 1740
consensus_3178#1 GGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGG 157
************************************************************
consensus_3178#0 TTACGCAGTGTACATCAACAAGATGGAAGATGTATATGAGATTACATATGATACTTGTGG 1800
consensus_3178#1 TTACGCAGTGTACATCAACCAGATGGAAGATGTATATGAGATTACATATGATACTTGTGG 217
******************* ****************************************
consensus_3178#0 ACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTAC 1860
consensus_3178#1 ACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTAC 277
************************************************************
consensus_3178#0 AATG---------------CTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTT 1905
consensus_3178#1 AATGTTAGGGCTGTTTGGGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTT 337
**** *****************************************
consensus_3178#0 GCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACCTTCCT 1965
consensus_3178#1 GCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACTTTCCT 397
****************************************************** *****
consensus_3178#0 TCATCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAG 2025
consensus_3178#1 TCGTCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAG 457
** *********************************************************
consensus_3178#0 AGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTT 2085
consensus_3178#1 AGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTT 517
************************************************************
consensus_3178#0 CTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACA 2145
consensus_3178#1 CTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACA 577
************************************************************
consensus_3178#0 CCGCTAGCTTGGTATTGGTTTTAGTCCTGTTACATAATAAGAACCAGGCAAATTTT-CGT 2204
consensus_3178#1 CCGCTAGCTTGGTATTGGTTTTAGTTCTGTTACATAATAAGAACCAGGCAAATTTTTCGT 637
************************* ****************************** ***
consensus_3178#0 GTGAAGTTTGGCTGTTGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATG 2264
consensus_3178#1 GTGAAGTTTGGCTGTCGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATG 697
*************** ********************************************
consensus_3178#0 TGCTCAAGGAGTCGTTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGTGAAAA 2324
consensus_3178#1 TGCTCAAGGAGTCGNTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGNGAAAA 757
************** *************************************** *****
consensus_3178#0 TTACAAATTCAAACAA--------------------------------------- 2340
consensus_3178#1 TTACAAATTCAAACAATTTTTCTCTTATAAGTGATCAGGGGGATCTAACAAATGA 812
****************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||