These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3183#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [TGGACTGAACGAGTAGAAACGACCGGAAGCCACCAAAGAGTAGTAGTTGGAATCTGCACTAGTCACTGTATGCATCCTATTGCTGTGTATGTTGTACAGTGGGCACTAAATCTGAATGTCGTCACTGTCTGCATCCCTATTGCTTTGTTAAGTACTGTAGTAGGAGACTCGATCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATAAAAAAAAAAAAAAAAAGC] [+] EMBL CF291138 [TGGACTGAACGAGTAGAAACGACCGGAAGCCACCAAAGAGTAGTAGTTGGAATCTGCACTAGTCACTGTATGCATCCTATTGCTGTGTATGTTGTACAGTGGGCACTAAATCTGAATGTCGTCACTGTCTGCATCCCTATTGCTTTGTTAAGTACTGTAGTAGGAGACTCGATCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATAAAAAAAAAAAAAAAAAGC] consensusID : consensus_3183#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [TCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATTAACCTGCTATGCATGATCCAAGTGGTATCTATGTACTATATCTATCATGAATGAATAAACAGGTAGCCTTTTCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT] [+] EMBL CF319661 [TCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATTAACCTGCTATGCATGATCCAAGTGGTATCTATGTACTATATCTATCATGAATGAATAAACAGGTAGCCTTTTCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3183#0 TGGACTGAACGAGTAGAAACGACCGGAAGCCACCAAAGAGTAGTAG--TTGGAATCTGCA 58 consensus_3183#1 -----------------TCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCA 43 * * * * * * * * * ** * *** ** consensus_3183#0 CTAGTC-ACTGTATGC-ATCCTATTGCTGTGTATGTTGTACAGTGGGCACTAAATCTGAA 116 consensus_3183#1 TTAACCTGCTATGCATGATCCAAGTGGTATCTATGTACTATATCTATCA-TGAATGAATA 102 ** * ** * **** * ** * * ***** ** * ** * *** * consensus_3183#0 TGTCGTCACTGTCTGCATCCCTATTGCTTTGTTAAGTACTGTAGTAGGAGACTCGATCTG 176 consensus_3183#1 AACAGGTAGCCTTTTCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 162 * * * * ** * ** * * * * * * consensus_3183#0 TATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATAAAAAAAAAAAAAAAAAGC 235 consensus_3183#1 AAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT---------- 211 * * * * * *** * ** * * * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||