These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1771 fasta sequence [CCATTGCCTCCCTTGATACTGCCGATACCGCCCACTTGACTGTCTGGAGTACCTCTCCCCAATCTCAGGGCGCAGCGGCTCGTAGGGGCTCGGCGGCAAGCCGTGCCCATACCGCCCACCACCATAGCGTGAGCGGTGATACCCTGGCATTGGTGGCGGCTCAGGGTTCTCAGGGAGCAGCGAGAGCGCTCGTCGGCCCGCCCGACGGTGCTCCCGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACACGGATTGAGAGAAATCTGTGAGGCGGTTGGGACGGTGGAGGAACAGATCAGCAGTGGATCCAGAGAAGATGCCAAATGAGGTAAGATCCGCCGGTTCCGCGGGGGGATGGGAGGCGAAGCGGGGATTACCTTCCGACCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCGCAGTGGCAGTGTGCGCGTGGTAACGGAGACGACGAGGGAGCCAACTGAAAGAGCCTTATATATACCCACGAGCCCACGAGGGACCTGTTTGTAATTAGTATATTTTCCGGGGGGGTCGGTCGCGGTGGGGTTTCGTGGGGATGTGGTCCGCTTTTGGAATGATCTGGCTGCGCCGCTGACGTGGGGGGGTCAAAAGGTAGGGCCCACGTGGAAGCGAGCGGCAAAGGTGGGGTACAGCTGGTGAAATGGAATTCGCCGTATCTCTCTTCTTTTCTTTTCTTTACTTTTCCATTTCGTCTTGGGAGAGCCATTATTTAGCATTTTAGCATCAGTCCTGCATAACCCACAGTGATAATTAAATTAGTAGTTAATCAATCACTTATCCATCGTATGAACACTTGAACAGGCTGAAGCTAAGATAATGGTCACAATCTCAACTACTTTCTTAGTTTGGTAGTACCAGCATCAATTCTTTCATTCTTGTGCCAAACATCTCACTGGGAGAAACAATAAAATAAGGCCGGTGATGCTTGTACGTGGGATAGTTGGTTATTTGTGAAGGCGACCTGAAGAATGGCATTTGCCTTTAGCTGGGAGCTTACTACTACTAACATTTTGACAACAGATTTCGTGTAAGCAAAATAGCCAACTGTTTGTGTCTCTCATCAGGCCTTCCAATTAAGTAGGCCTACTTGCAAAGCCGCAACAATGGCGGACATGATTACTGGTATGATTCAGTAGAATCTTAGCGGATTAAACGGCTTGAACTCTAAGGATGCTGCACATGCAGGGCAATGTCGTTCCAATGGCCACTAGACAATTAGTAATTTTAGTACTTGTTAAGCTCTTTAGTATCAGAGAACTAACAGGTTTAATTCCCTGAGCACATGTCTGCAGCTTTAAATTTCCCGTAGGGCCTTTCATAAATCACAATTATGTACTCCTACCCTTGCTTGCTTCTAGAACACACAGTTTTCTTTTCAAGCTGTCATCCTCCTCCTCTCATCAGCTGATATAAACAAGGCATTT] [+] EMBL AK106945 [CCATTGCCTCCCTTGATACTGCCGATACCGCCCACTTGACTGTCTGGAGTACCTCTCCCCAATCTCAGGGCGCAGCGGCTCGTAGGGGCTCGGCGGCAAGCCGTGCCCATACCGCCCACCACCATAGCGTGAGCGGTGATACCCTGGCATTGGTGGCGGCTCAGGGTTCTCAGGGAGCAGCGAGAGCGCTCGTCGGCCCGCCCGACGGTGCTCCCGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACACGGATTGAGAGAAATCTGTGAGGCGGTTGGGACGGTGGAGGAACAGATCAGCAGTGGATCCAGAGAAGATGCCAAATGAGGTAAGATCCGCCGGTTCCGCGGGGGGATGGGAGGCGAAGCGGGGATTACCTTCCGACCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCGCAGTGGCAGTGTGCGCGTGGTAACGGAGACGACGAGGGAGCCAACTGAAAGAGCCTTATATATACCCACGAGCCCACGAGGGACCTGTTTGTAATTAGTATATTTTCCGGGGGGGTCGGTCGCGGTGGGGTTTCGTGGGGATGTGGTCCGCTTTTGGAATGATCTGGCTGCGCCGCTGACGTGGGGGGGTCAAAAGGTAGGGCCCACGTGGAAGCGAGCGGCAAAGGTGGGGTACAGCTGGTGAAATGGAATTCGCCGTATCTCTCTTCTTTTCTTTTCTTTACTTTTCCATTTCGTCTTGGGAGAGCCATTATTTAGCATTTTAGCATCAGTCCTGCATAACCCACAGTGATAATTAAATTAGTAGTTAATCAATCACTTATCCATCGTATGAACACTTGAACAGGCTGAAGCTAAGATAATGGTCACAATCTCAACTACTTTCTTAGTTTGGTAGTACCAGCATCAATTCTTTCATTCTTGTGCCAAACATCTCACTGGGAGAAACAATAAAATAAGGCCGGTGATGCTTGTACGTGGGATAGTTGGTTATTTGTGAAGGCGACCTGAAGAATGGCATTTGCCTTTAGCTGGGAGCTTACTACTACTAACATTTTGACAACAGATTTCGTGTAAGCAAAATAGCCAACTGTTTGTGTCTCTCATCAGGCCTTCCAATTAAGTAGGCCTACTTGCAAAGCCGCAACAATGGCGGACATGATTACTGGTATGATTCAGTAGAATCTTAGCGGATTAAACGGCTTGAACTCTAAGGATGCTGCACATGCAGGGCAATGTCGTTCCAATGGCCACTAGACAATTAGTAATTTTAGTACTTGTTAAGCTCTTTAGTATCAGAGAACTAACAGGTTTAATTCCCTGAGCACATGTCTGCAGCTTTAAATTTCCCGTAGGGCCTTTCATAAATCACAATTATGTACTCCTACCCTTGCTTGCTTCTAGAACACACAGTTTTCTTTTCAAGCTGTCATCCTCCTCCTCTCATCAGCTGATATAAACAAGGCATTT] consensusID : consensus_3190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [CGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACNCGGNTTGAGAGAAATCAAAAAANCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCG] [-] EMBL AU166284 [CGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACNCGGNTTGAGAGAAATCAAAAAANCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3190#0 CCATTGCCTCCCTTGATACTGCCGATACCGCCCACTTGACTGTCTGGAGTACCTCTCCCC 60 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 AATCTCAGGGCGCAGCGGCTCGTAGGGGCTCGGCGGCAAGCCGTGCCCATACCGCCCACC 120 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 ACCATAGCGTGAGCGGTGATACCCTGGCATTGGTGGCGGCTCAGGGTTCTCAGGGAGCAG 180 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 CGAGAGCGCTCGTCGGCCCGCCCGACGGTGCTCCCGCGGCGGCTCGACGATCTGGCAGGT 240 consensus_3190#1 ----------------------------------CGCGGCGGCTCGACGATCTGGCAGGT 26 ************************** consensus_3190#0 CCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTT 300 consensus_3190#1 CCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTT 86 ************************************************************ consensus_3190#0 CAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAAT 360 consensus_3190#1 CAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAAT 146 ************************************************************ consensus_3190#0 CCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAG 420 consensus_3190#1 CCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAG 206 ************************************************************ consensus_3190#0 ACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACACGG 480 consensus_3190#1 ACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACNCGG 266 ******************************************************** *** consensus_3190#0 ATTGAGAGAAATCTGTGAGGCGGTTGGGACGGTGGAGGAACAGATCAGCAGTGGATCCAG 540 consensus_3190#1 NTTGAGAGAAATC---------------------------------------------AA 281 ************ * consensus_3190#0 AGAAGATGCCAAATGAGGTAAGATCCGCCGGTTCCGCGGGGGGATGGGAGGCGAAGCGGG 600 consensus_3190#1 AAAAN------------------------------------------------------- 286 * ** consensus_3190#0 GATTACCTTCCGACCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGC 660 consensus_3190#1 --------------CAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGC 332 ********************************************** consensus_3190#0 CGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGG 720 consensus_3190#1 CGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGG 392 ************************************************************ consensus_3190#0 AGGAGGAGGGGAACGGCACTCGCAGTGGCAGTGTGCGCGTGGTAACGGAGACGACGAGGG 780 consensus_3190#1 AGGAGGAGGGGAACGGCACTCG-------------------------------------- 414 ********************** consensus_3190#0 AGCCAACTGAAAGAGCCTTATATATACCCACGAGCCCACGAGGGACCTGTTTGTAATTAG 840 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 TATATTTTCCGGGGGGGTCGGTCGCGGTGGGGTTTCGTGGGGATGTGGTCCGCTTTTGGA 900 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 ATGATCTGGCTGCGCCGCTGACGTGGGGGGGTCAAAAGGTAGGGCCCACGTGGAAGCGAG 960 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 CGGCAAAGGTGGGGTACAGCTGGTGAAATGGAATTCGCCGTATCTCTCTTCTTTTCTTTT 1020 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 CTTTACTTTTCCATTTCGTCTTGGGAGAGCCATTATTTAGCATTTTAGCATCAGTCCTGC 1080 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 ATAACCCACAGTGATAATTAAATTAGTAGTTAATCAATCACTTATCCATCGTATGAACAC 1140 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 TTGAACAGGCTGAAGCTAAGATAATGGTCACAATCTCAACTACTTTCTTAGTTTGGTAGT 1200 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 ACCAGCATCAATTCTTTCATTCTTGTGCCAAACATCTCACTGGGAGAAACAATAAAATAA 1260 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 GGCCGGTGATGCTTGTACGTGGGATAGTTGGTTATTTGTGAAGGCGACCTGAAGAATGGC 1320 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 ATTTGCCTTTAGCTGGGAGCTTACTACTACTAACATTTTGACAACAGATTTCGTGTAAGC 1380 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 AAAATAGCCAACTGTTTGTGTCTCTCATCAGGCCTTCCAATTAAGTAGGCCTACTTGCAA 1440 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 AGCCGCAACAATGGCGGACATGATTACTGGTATGATTCAGTAGAATCTTAGCGGATTAAA 1500 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 CGGCTTGAACTCTAAGGATGCTGCACATGCAGGGCAATGTCGTTCCAATGGCCACTAGAC 1560 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 AATTAGTAATTTTAGTACTTGTTAAGCTCTTTAGTATCAGAGAACTAACAGGTTTAATTC 1620 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 CCTGAGCACATGTCTGCAGCTTTAAATTTCCCGTAGGGCCTTTCATAAATCACAATTATG 1680 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 TACTCCTACCCTTGCTTGCTTCTAGAACACACAGTTTTCTTTTCAAGCTGTCATCCTCCT 1740 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 CCTCTCATCAGCTGATATAAACAAGGCATTT 1771 consensus_3190#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||