cluster # 3205

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3205 cluster # 3205 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3205#0 length = 666 sequences # 1

consensus_3205#1 length = 410 sequences # 1

consensusID : consensus_3205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [TTTTAAGGTTTTTTAAGCTTTATATCATCGTTTTCTGGCCTTTAAAAGCAAACTTGTGAAACAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTCTCAAAAAAAAGGGGAAAAAAAAACAAACGAACGAACAAGCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAGGATGAAAGAACTCAATTATCCGCCGGAGAGGCAGCTGACGACGATGAATCCGATGATCTAAAAATTCTCCTTGGGGAAGACGAATTTGGTGGGGGTCTTGTGGGAAAAGTCCTGGGCGAGGCGGCGGAGCTCCGGGGTGAACGCCTGGTCGCCGCAAAAAAAGACGCCGACGCGCTGCCCCTGGTGGTTCACGGGGACGCGCTTGAACACGTCGCGCCAGCTCGGGCGCGCGAAGTGGGTGCGCACCCGCGTCCCGGACACCACGTCCACGCCGTTCTTGGCGTGGTGGAGCGCCTGGAGCATCGTCACCAGCGCCGACCGCGCGTCCCCCTCCTCGTACACGCTGGTGCAGTGGTTGTGGAGCTCGATCAACTCGCGCCCGGGGTCGCGGTCGGCCACCTCGTTCATCACGCCGCGGAACCACTCGAACGAGC]

[+] EMBL CB653675             [TTTTAAGGTTTTTTAAGCTTTATATCATCGTTTTCTGGCCTTTAAAAGCAAACTTGTGAAACAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTCTCAAAAAAAAGGGGAAAAAAAAACAAACGAACGAACAAGCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAGGATGAAAGAACTCAATTATCCGCCGGAGAGGCAGCTGACGACGATGAATCCGATGATCTAAAAATTCTCCTTGGGGAAGACGAATTTGGTGGGGGTCTTGTGGGAAAAGTCCTGGGCGAGGCGGCGGAGCTCCGGGGTGAACGCCTGGTCGCCGCAAAAAAAGACGCCGACGCGCTGCCCCTGGTGGTTCACGGGGACGCGCTTGAACACGTCGCGCCAGCTCGGGCGCGCGAAGTGGGTGCGCACCCGCGTCCCGGACACCACGTCCACGCCGTTCTTGGCGTGGTGGAGCGCCTGGAGCATCGTCACCAGCGCCGACCGCGCGTCCCCCTCCTCGTACACGCTGGTGCAGTGGTTGTGGAGCTCGATCAACTCGCGCCCGGGGTCGCGGTCGGCCACCTCGTTCATCACGCCGCGGAACCACTCGAACGAGC]




>consensus_3205#0
TTTTAAGGTTTTTTAAGCTTTATATCATCGTTTTCTGGCCTTTAAAAGCAAACTTGTGAA
ACAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTCTCAAAAAAA
AGGGGAAAAAAAAACAAACGAACGAACAAGCAATCACTCACTAAAATATGTAGTCCTATC
TCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAGGATGAAAG
AACTCAATTATCCGCCGGAGAGGCAGCTGACGACGATGAATCCGATGATCTAAAAATTCT
CCTTGGGGAAGACGAATTTGGTGGGGGTCTTGTGGGAAAAGTCCTGGGCGAGGCGGCGGA
GCTCCGGGGTGAACGCCTGGTCGCCGCAAAAAAAGACGCCGACGCGCTGCCCCTGGTGGT
TCACGGGGACGCGCTTGAACACGTCGCGCCAGCTCGGGCGCGCGAAGTGGGTGCGCACCC
GCGTCCCGGACACCACGTCCACGCCGTTCTTGGCGTGGTGGAGCGCCTGGAGCATCGTCA
CCAGCGCCGACCGCGCGTCCCCCTCCTCGTACACGCTGGTGCAGTGGTTGTGGAGCTCGA
TCAACTCGCGCCCGGGGTCGCGGTCGGCCACCTCGTTCATCACGCCGCGGAACCACTCGA
ACGAGC

consensusID : consensus_3205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [AAAAAAGCACTTTGTGGTAAGCTTTATATCATCGTTTTCTGGTAATTTTGTACAAACTTGTGAAACAAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTACCTACACAGAAGGAAAAAAAAACAAACGAACGAACAACCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAAGATGAACAACTCAATTATCCGCCGGAGAGGCAGCTGATGAATCCGAACCCGAATCCGACGATCTAGAAATTCTCCTTGTGGAAGACGAACTTGGTGGTGGTCTTGTGGGAGAAGTCCTGGGCGAGGCGGCGGAGCTCCGGCGTGAGCGCCTGGTCGCCGCAGAAGAAGACGCCG]

[-] EMBL CA765988             [AAAAAAGCACTTTGTGGTAAGCTTTATATCATCGTTTTCTGGTAATTTTGTACAAACTTGTGAAACAAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTACCTACACAGAAGGAAAAAAAAACAAACGAACGAACAACCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAAGATGAACAACTCAATTATCCGCCGGAGAGGCAGCTGATGAATCCGAACCCGAATCCGACGATCTAGAAATTCTCCTTGTGGAAGACGAACTTGGTGGTGGTCTTGTGGGAGAAGTCCTGGGCGAGGCGGCGGAGCTCCGGCGTGAGCGCCTGGTCGCCGCAGAAGAAGACGCCG]




>consensus_3205#1
AAAAAAGCACTTTGTGGTAAGCTTTATATCATCGTTTTCTGGTAATTTTGTACAAACTTG
TGAAACAAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTACCTA
CACAGAAGGAAAAAAAAACAAACGAACGAACAACCAATCACTCACTAAAATATGTAGTCC
TATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAAGATG
AACAACTCAATTATCCGCCGGAGAGGCAGCTGATGAATCCGAACCCGAATCCGACGATCT
AGAAATTCTCCTTGTGGAAGACGAACTTGGTGGTGGTCTTGTGGGAGAAGTCCTGGGCGA
GGCGGCGGAGCTCCGGCGTGAGCGCCTGGTCGCCGCAGAAGAAGACGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3205#0      TTTTAAGGTTTTT----TAAGCTTTATATCATCGTTTTCTGGCCTTTAAAAGCAAACTTG 56
consensus_3205#1      AAAAAAGCACTTTGTGGTAAGCTTTATATCATCGTTTTCTGGTAATTTTGTACAAACTTG 60
                          ***   ***    *************************   **     ********

consensus_3205#0      TGAAACAAAAAAAA-CATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTCTCAA 115
consensus_3205#1      TGAAACAAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTACCTA 120
                      ************** ****************************************  * *

consensus_3205#0      AAAAAAGGGGAAAAAAAAACAAACGAACGAACAAGCAATCACTCACTAAAATATGTAGTC 175
consensus_3205#1      CACAGAAGG-AAAAAAAAACAAACGAACGAACAACCAATCACTCACTAAAATATGTAGTC 179
                       * * * ** ************************ *************************

consensus_3205#0      CTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAGGAT 235
consensus_3205#1      CTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAAGAT 239
                      ******************************************************** ***

consensus_3205#0      GAAAGAACTCAATTATCCGCCGGAGAGGCAGCTGACGA---CGA---TGAATCCGATGAT 289
consensus_3205#1      GAAC-AACTCAATTATCCGCCGGAGAGGCAGCTGATGAATCCGAACCCGAATCCGACGAT 298
                      ***  ****************************** **   ***    ******** ***

consensus_3205#0      CTAAAAATTCTCCTTGGGGAAGACGAATTTGGTGGGGGTCTTGTGGGAAAAGTCCTGGGC 349
consensus_3205#1      CTAGAAATTCTCCTTGTGGAAGACGAACTTGGTGGTGGTCTTGTGGGAGAAGTCCTGGGC 358
                      *** ************ ********** ******* ************ ***********

consensus_3205#0      GAGGCGGCGGAGCTCCGGGGTGAACGCCTGGTCGCCGCAAAAAAAGACGCCGACGCGCTG 409
consensus_3205#1      GAGGCGGCGGAGCTCCGGCGTGAGCGCCTGGTCGCCGCAGAAGAAGACGCCG-------- 410
                      ****************** **** *************** ** *********        

consensus_3205#0      CCCCTGGTGGTTCACGGGGACGCGCTTGAACACGTCGCGCCAGCTCGGGCGCGCGAAGTG 469
consensus_3205#1      ------------------------------------------------------------
                                                                                  

consensus_3205#0      GGTGCGCACCCGCGTCCCGGACACCACGTCCACGCCGTTCTTGGCGTGGTGGAGCGCCTG 529
consensus_3205#1      ------------------------------------------------------------
                                                                                  

consensus_3205#0      GAGCATCGTCACCAGCGCCGACCGCGCGTCCCCCTCCTCGTACACGCTGGTGCAGTGGTT 589
consensus_3205#1      ------------------------------------------------------------
                                                                                  

consensus_3205#0      GTGGAGCTCGATCAACTCGCGCCCGGGGTCGCGGTCGGCCACCTCGTTCATCACGCCGCG 649
consensus_3205#1      ------------------------------------------------------------
                                                                                  

consensus_3205#0      GAACCACTCGAACGAGC 666
consensus_3205#1      -----------------