These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [TCTTGCCAAGCACCCCATGNCACTGTGCTCAAACTAAATCGTGAGNCAACCACACACCAACCCCTGTGCGCACACTCTTCTTCGCTCAATTCTGGGACTCGCAACCTGGTCGATTCAATGAATCAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGTCGTTGCACCTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCCAAATTAGCCAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCACTCCAGAACNCACGGAAGAAGTGCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGACACAAATGTTTTAAGTGGAGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGGTTTATCTGGATNCCGACTAGATTACTTTTGGTTAAAAAAAAAA] [+] EMBL BM420463 [TCTTGCCAAGCACCCCATGNCACTGTGCTCAAACTAAATCGTGAGNCAACCACACACCAACCCCTGTGCGCACACTCTTCTTCGCTCAATTCTGGGACTCGCAACCTGGTCGATTCAATGAATCAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGTCGTTGCACCTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCCAAATTAGCCAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCACTCCAGAACNCACGGAAGAAGTGCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGACACAAATGTTTTAAGTGGAGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGGTTTATCTGGATNCCGACTAGATTACTTTTGGTTAAAAAAAAAA] consensusID : consensus_3207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [GTTCAAGTTAGCACATTTTTTGTTCTTCACCTTTTGTGATGAACAACAAATTTAACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATGCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCAAATTAGCAAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCAACTGCAGAACTAACGGAAGAAGTGCCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGAACAAATGTTTTAGTGGAGGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTCGTGGTGTTGGTAGGTATTTTTGTTCTTGTTTTCTTTTGCTGTTAATGTTTGCAGCCTGGAAGTGAAAGGGATCGTATTTCACTAAAAA] [+] EMBL BI803490 [GTTCAAGTTAGCACATTTTTTGTTCTTCACCTTTTGTGATGAACAACAAATTTAACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATGCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCAAATTAGCAAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCAACTGCAGAACTAACGGAAGAAGTGCCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGAACAAATGTTTTAGTGGAGGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTCGTGGTGTTGGTAGGTATTTTTGTTCTTGTTTTCTTTTGCTGTTAATGTTTGCAGCCTGGAAGTGAAAGGGATCGTATTTCACTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3207#0 TCTTGCCAAGCACCCCATGNCACTGTGCTCAAACTAAATCGTGAGNCAACCACACACCAA 60 consensus_3207#1 ------------------------------------------------------------ consensus_3207#0 CCCCTGTGCGCACACTCTTCTTCGCTCAATTCTGGGACTCGCAACCTGGTCGATTCAATG 120 consensus_3207#1 ------------------------------------------------------------ consensus_3207#0 AATCAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGTCGTTGCAC 180 consensus_3207#1 ----------------------------GTTCAAGTTAGCACATTTTTTGTTCTT--CAC 30 **************** ***** ** * *** consensus_3207#0 CTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGA 240 consensus_3207#1 CTTTTGTGATGAA-CAAC--AAATTTAACATCCACCATGTCTATCTGGAAGTTATCCTGA 87 ************* *** ****** ********************************* consensus_3207#0 TGATGGTGATGAT-CCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGG 299 consensus_3207#1 TGATGGTGATGATGCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGG 147 ************* ********************************************** consensus_3207#0 TTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCCAAATTAGCCAAGACAAGGG 359 consensus_3207#1 TTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCC-AAATTAGCAAAGACAAGGG 206 **************************************** ******** ********** consensus_3207#0 CAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCA-CTCCAGAACNCACGGAAG 418 consensus_3207#1 CAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCAACTGCAGAACTAACGGAAG 266 ***************************************** ** ****** ******* consensus_3207#0 AAGTGC-TGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTG 477 consensus_3207#1 AAGTGCCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTG 326 ****** ***************************************************** consensus_3207#0 ACACAAATGTTTTAAGTGGAGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTT 537 consensus_3207#1 A-ACAAATGTTTTAGTGGAGGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTT 385 * ************ * **************************************** consensus_3207#0 TTGGGTTTATCTGGATNCCGACTAGATTACTTTTGGTTAAAAAAAAAA------------ 585 consensus_3207#1 TTGGTTTATGCTGGATGT-GACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTA 444 **** ** ****** ******************* * * consensus_3207#0 ------------------------------------------------------------ consensus_3207#1 CTCGTGGTGTTGGTAGGTATTTTTGTTCTTGTTTTCTTTTGCTGTTAATGTTTGCAGCCT 504 consensus_3207#0 ------------------------------- consensus_3207#1 GGAAGTGAAAGGGATCGTATTTCACTAAAAA 535 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||