These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1854 fasta sequence [TTGACGGCATCTCATCCAGGAGCCCAGGTCGGCGCCGCCGCACACGCGTGGCGGCCTCGCCGGCGACTCGGCTGCTCAGAGCGGCGCGAAGAAAGGCCGCGCTGGAGTCTGCAGCCGCTGCGTGTGGCAGAGTAGAGACCAGCCAGGGAGAGCGCAGCTGTCAGCAACCTATACCAGCCAGTGAGCTTGCTCGCGCCGTTCGCCGGGGCGGGGGAAGAGAACCATCTGGCGACAAAGCACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGAAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGTCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATTCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTAGGCTCAGAGGCAGACTGTCGTGCCACTCTTCCCCGACGACCGGATTCTCGCTTCGACAATTGAGGTCTTGGCACGCTTCGACCAGCTGAAGATGGAGGATGCGCTAGAGCAGTGCGTCCCTTCAGCGAGCCGTGCTGTTCTTGAAGCCATGGTCAGTGGGTTCATCAGGGCAGGTAAAGTAGGCCTTGCCCGAAAACTCCTCGAGTTCGCCACGATCAACAAGAGGACACTGAGCCCGAGCGTCCACGTGAAGCTGATGCTGGAGGCCGTCCGTACGCCTGAGGGCTACGGGCTCGCCGCGGCGCTGCTGGACGAGCTCGGCGAGAGGCCGGAGCTGCACGTTCGGCAGCAGGACTGCACGGCCGTGATGAAGGTGTGCGTGAAGCTCCGGCGGTACGCCGCCGTGGAGAGCCTGTTCGGCTGGTTCAGGGACACCGGCGGGAGGCCCACGGTGGTGATGTACACGGCGGTGATCCACAGCCGGTGCCGCGACGGGCGGCACCGGGAGGCGCTGTCCCTGGCGTGGGAGATGGAGCGGCACGCCGGCGGCCTCCTCGACCTGCCGGCGTACCGGGTGCTGGTGAAGCTGTGCGTGGCGTTGCGCGACCACGAGAGGGGCGTCCGGTACTTGGCGAGGATGAAGGACGCCGGGTTCGTCCCGACCGGCGACATGTACGGCGGCCTGATCGGAGGCTACGCGGCGGAGGGGAGGATGGGCAGGTGCCGGAGGCTGATCAGGGAGGCGGAGTTGGCCGGCGTGAAGCTGGAGAGGAGGCTGCTTTCGCGCTTGTCTGAGATGGGGGTTGAGCATTCTCAGCTCTGAAAGAAAGAAACTGATCTTGCTGTTGGCATCTGACTAGCATGGACATTGCACAGAAATTGAACTGTAAAATTAGGCTCTGCGTAATTGCCTTTAACCTGTAGTAACAGAACATTACATTATGAATATATTTGTTTTGTTGTTGGCTT] [+] EMBL AK068524 [TTGACGGCATCTCATCCAGGAGCCCAGGTCGGCGCCGCCGCACACGCGTGGCGGCCTCGCCGGCGACTCGGCTGCTCAGAGCGGCGCGAAGAAAGGCCGCGCTGGAGTCTGCAGCCGCTGCGTGTGGCAGAGTAGAGACCAGCCAGGGAGAGCGCAGCTGTCAGCAACCTATACCAGCCAGTGAGCTTGCTCGCGCCGTTCGCCGGGGCGGGGGAAGAGAACCATCTGGCGACAAAGCACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGAAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGTCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATTCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTAGGCTCAGAGGCAGACTGTCGTGCCACTCTTCCCCGACGACCGGATTCTCGCTTCGACAATTGAGGTCTTGGCACGCTTCGACCAGCTGAAGATGGAGGATGCGCTAGAGCAGTGCGTCCCTTCAGCGAGCCGTGCTGTTCTTGAAGCCATGGTCAGTGGGTTCATCAGGGCAGGTAAAGTAGGCCTTGCCCGAAAACTCCTCGAGTTCGCCACGATCAACAAGAGGACACTGAGCCCGAGCGTCCACGTGAAGCTGATGCTGGAGGCCGTCCGTACGCCTGAGGGCTACGGGCTCGCCGCGGCGCTGCTGGACGAGCTCGGCGAGAGGCCGGAGCTGCACGTTCGGCAGCAGGACTGCACGGCCGTGATGAAGGTGTGCGTGAAGCTCCGGCGGTACGCCGCCGTGGAGAGCCTGTTCGGCTGGTTCAGGGACACCGGCGGGAGGCCCACGGTGGTGATGTACACGGCGGTGATCCACAGCCGGTGCCGCGACGGGCGGCACCGGGAGGCGCTGTCCCTGGCGTGGGAGATGGAGCGGCACGCCGGCGGCCTCCTCGACCTGCCGGCGTACCGGGTGCTGGTGAAGCTGTGCGTGGCGTTGCGCGACCACGAGAGGGGCGTCCGGTACTTGGCGAGGATGAAGGACGCCGGGTTCGTCCCGACCGGCGACATGTACGGCGGCCTGATCGGAGGCTACGCGGCGGAGGGGAGGATGGGCAGGTGCCGGAGGCTGATCAGGGAGGCGGAGTTGGCCGGCGTGAAGCTGGAGAGGAGGCTGCTTTCGCGCTTGTCTGAGATGGGGGTTGAGCATTCTCAGCTCTGAAAGAAAGAAACTGATCTTGCTGTTGGCATCTGACTAGCATGGACATTGCACAGAAATTGAACTGTAAAATTAGGCTCTGCGTAATTGCCTTTAACCTGTAGTAACAGAACATTACATTATGAATATATTTGTTTTGTTGTTGGCTT] consensusID : consensus_3216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [TGCTTATTATACATGCTGACTTGCANCCTTTTGCTTTATCATGCTACTATCTGGAATCAATATTGTTCTAAGTACCANCATTTTGCCTAATCTTAAAACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGTAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGCCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCNTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATCCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTGGGCTCAGAGGCAGACTGTCGTGCCACTC] [-] EMBL CA766092 [TGCTTATTATACATGCTGACTTGCANCCTTTTGCTTTATCATGCTACTATCTGGAATCAATATTGTTCTAAGTACCANCATTTTGCCTAATCTTAAAACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGTAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGCCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCNTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATCCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTGGGCTCAGAGGCAGACTGTCGTGCCACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3216#0 TTGACGGCATCTCATCCAGGAGCCCAGGTCGGCGCCGCCGCACACGCGTGGCGGCCTCGC 60 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 CGGCGACTCGGCTGCTCAGAGCGGCGCGAAGAAAGGCCGCGCTGGAGTCTGCAGCCGCTG 120 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 CGTGTGGCAGAGTAGAGACCAGCCAGGGAGAGC-GCAGCTGTCAGCAACCTATACCAGCC 179 consensus_3216#1 ------------TGCTTATTATACATGCTGACTTGCANCCTTTTGC----TTTATCATGC 44 * * * ** * ** *** * * ** * ** ** * consensus_3216#0 AGTGAGCTTGCTCGCGCCGTTCGCCGGGGCGGGGGAAGAGAACCATCTGGCGACAAAGCA 239 consensus_3216#1 TACTATCTGGAAT-CAATATTGTTCTAAGTACCANCA---TTTTGCCTAATCTTAAA--A 98 * ** * * ** * * * ** *** * consensus_3216#0 CAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCT 299 consensus_3216#1 CAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCT 158 ************************************************************ consensus_3216#0 CGGCGAAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAA 359 consensus_3216#1 CGGCGTAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAA 218 ***** ****************************************************** consensus_3216#0 TTTCTTGCACAGAGCCATCGAATGGGGGTTCTGTCATGGAGTTGGAGGTAATGGACCGCA 419 consensus_3216#1 TTTCTTGCACAGAGCCATCGAATGGGGGTTCTGCCATGGAGTTGGAGGTAATGGACCGCA 278 ********************************* ************************** consensus_3216#0 ATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAG 479 consensus_3216#1 ATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAG 338 ************************************************************ consensus_3216#0 AGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGA 539 consensus_3216#1 AGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGA 398 ************************************************************ consensus_3216#0 TGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCAC 599 consensus_3216#1 TGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCAC 458 ************************************************************ consensus_3216#0 TGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAG 659 consensus_3216#1 TGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAG 518 ************************************************************ consensus_3216#0 CAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGG 719 consensus_3216#1 CAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGG 578 ************************************************************ consensus_3216#0 TCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCT-GACGTGTCCATT 778 consensus_3216#1 TCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCNTGACGTGTCCATT 638 ********************************************** ************ consensus_3216#0 GTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATTCGGGAG 838 consensus_3216#1 GTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATCCGGGAG 698 ***************************************************** ****** consensus_3216#0 CTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTAGGCTCAGAGGCAG 898 consensus_3216#1 CTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTGGGCTCAGAGGCAG 758 ********************************************** ************* consensus_3216#0 ACTGTCGTGCCACTCTTCCCCGACGACCGGATTCTCGCTTCGACAATTGAGGTCTTGGCA 958 consensus_3216#1 ACTGTCGTGCCACTC--------------------------------------------- 773 *************** consensus_3216#0 CGCTTCGACCAGCTGAAGATGGAGGATGCGCTAGAGCAGTGCGTCCCTTCAGCGAGCCGT 1018 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 GCTGTTCTTGAAGCCATGGTCAGTGGGTTCATCAGGGCAGGTAAAGTAGGCCTTGCCCGA 1078 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 AAACTCCTCGAGTTCGCCACGATCAACAAGAGGACACTGAGCCCGAGCGTCCACGTGAAG 1138 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 CTGATGCTGGAGGCCGTCCGTACGCCTGAGGGCTACGGGCTCGCCGCGGCGCTGCTGGAC 1198 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 GAGCTCGGCGAGAGGCCGGAGCTGCACGTTCGGCAGCAGGACTGCACGGCCGTGATGAAG 1258 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 GTGTGCGTGAAGCTCCGGCGGTACGCCGCCGTGGAGAGCCTGTTCGGCTGGTTCAGGGAC 1318 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 ACCGGCGGGAGGCCCACGGTGGTGATGTACACGGCGGTGATCCACAGCCGGTGCCGCGAC 1378 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 GGGCGGCACCGGGAGGCGCTGTCCCTGGCGTGGGAGATGGAGCGGCACGCCGGCGGCCTC 1438 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 CTCGACCTGCCGGCGTACCGGGTGCTGGTGAAGCTGTGCGTGGCGTTGCGCGACCACGAG 1498 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 AGGGGCGTCCGGTACTTGGCGAGGATGAAGGACGCCGGGTTCGTCCCGACCGGCGACATG 1558 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 TACGGCGGCCTGATCGGAGGCTACGCGGCGGAGGGGAGGATGGGCAGGTGCCGGAGGCTG 1618 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 ATCAGGGAGGCGGAGTTGGCCGGCGTGAAGCTGGAGAGGAGGCTGCTTTCGCGCTTGTCT 1678 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 GAGATGGGGGTTGAGCATTCTCAGCTCTGAAAGAAAGAAACTGATCTTGCTGTTGGCATC 1738 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 TGACTAGCATGGACATTGCACAGAAATTGAACTGTAAAATTAGGCTCTGCGTAATTGCCT 1798 consensus_3216#1 ------------------------------------------------------------ consensus_3216#0 TTAACCTGTAGTAACAGAACATTACATTATGAATATATTTGTTTTGTTGTTGGCTT 1854 consensus_3216#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||