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Oryza sativa
cluster # 3221 cluster # 3221       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3221#0 length = 1073 sequences # 2  

consensusID : consensus_3221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1073
fasta sequence
                              [CCACGTCCGTTTCCGTACTCCACTCGTGGCAGGCAAACCAGCAGCATTCGAGCTGATGGCTGCTCTCGCGGTGGTGCACGGTTGGCTCGCTCCAGCGTTGTCCCGGCGCGCGGAGACGGGCGGTGGCCGCGCCGCGCTTCCGTGTCGTAGGCCCCGGCTCGTGGCAGTCGCGTGCGCTGCCTCGTCGGTTAATACGGCCACTACTACGGGCGAATCGCCGCTGGGCTCCGATGGCTCGGCAGCCGCCGCCATGTCGCTGGAGCGCGCGTTCGCCGGAGGGGACGGCGGTGGCGGCGGAGGCATTGGCCCCGCGGTCGAGTCCACCGTTGAGAAGCTGATATTCGATTTCCGTTTCCTGGCTCTCCTCGCCGTCGCCGGCTCCCTCCTCTGCTTCCTCAGTGGTTGTGTGTACATTAAAGAAGCATACCATGTCTACTGGACAAGCTGTGTTAGAGGTGTCCATACAGGGCAGATGGTCCTCAGGCTCGTCGAGGCTATCGATGTGTATCTTGCTGGAACAGTCATGCTGATTTTTGGGATGGGTCTGTATGGGCTGTTCATCAGCAACGATTTTCCTGATGTACCTGCATCTGATCGTGCTCTCAAGGGATCATCCTTGTTTGGCATGTTTGCTTTGAAGGAGAGACCGAGGTGGATGAGAATCAGCTCTCTCGATGAGCTCAAAACGAAGCTGGGCCACATCATCGTGATGATTCTCCTGGTGAAGATGTTCGAGAGGAGCAAGATGGTGCACATCACCACGGGAATGGACCTGCTCAGCTACGCGGTCTGCATCTTCTTGTCGTCGGCTTCCCTGTACATCCTGCACAACCTTCATCGCCCAGAACACGAGTAGTACATGATTGCAGCGCCGGACATGTTGCCTTCTACTCAGTAGTATTTTTTATAGCACATGCCATATAGGAAGAACTCATTGCCTCAGTGCTTGTATTTTGTAGCACTAGAACTGTTGCTAGGCAAGCCCTGATGCTGGGCTTAAACGGATTGCAAGGACAAATCAGTGTAAAGAACTCCTAAACAGCCTTATCTTTTCGTTTATGCTTATGCTTACG]

[+] EMBL AK060061             [CCACGTCCGTTTCCGTACTCCACTCGTGGCAGGCAAACCAGCAGCATTCGAGCTGATGGCTGCTCTCGCGGTGGTGCACGGTTGGCTCGCTCCAGCGTTGTCCCGGCGCGCGGAGACGGGCGGTGGCCGCGCCGCGCTTCCGTGTCGTAGGCCCCGGCTCGTGGCAGTCGCGTGCGCTGCCTCGTCGGTTAATACGGCCACTACTACGGGCGAATCGCCGCTGGGCTCCGATGGCTCGGCAGCCGCCGCCATGTCGCTGGAGCGCGCGTTCGCCGGAGGGGACGGCGGTGGCGGCGGAGGCATTGGCCCCGCGGTCGAGTCCACCGTTGAGAAGCTGATATTCGATTTCCGTTTCCTGGCTCTCCTCGCCGTCGCCGGCTCCCTCCTCTGCTTCCTCAGTGGTTGTGTGTACATTAAAGAAGCATACCATGTCTACTGGACAAGCTGTGTTAGAGGTGTCCATACAGGGCAGATGGTCCTCAGGCTCGTCGAGGCTATCGATGTGTATCTTGCTGGAACAGTCATGCTGATTTTTGGGATGGGTCTGTATGGGCTGTTCATCAGCAACGATTTTCCTGATGTACCTGCATCTGATCGTGCTCTCAAGGGATCATCCTTGTTTGGCATGTTTGCTTTGAAGGAGAGACCGAGGTGGATGAGAATCAGCTCTCTCGATGAGCTCAAAACGAAGCTGGGCCACATCATCGTGATGATTCTCCTGGTGAAGATGTTCGAGAGGAGCAAGATGGTGCACATCACCACGGGAATGGACCTGCTCAGCTACGCGGTCTGCATCTTCTTGTCGTCGGCTTCCCTGTACATCCTGCACAACCTTCATCGCCCAGAACACGAGTAGTACATGATTGCAGCGCCGGACATGTTGCCTTCTACTCAGTAGTATTTTTTATAGCACATGCCATATAGGAAGAACTCATTGCCTCAGTGCTTGTATTTTGTAGCACTAGAACTGTTGCTAGGCAAGCCCTGATGCTGGGCTTAAACGGATTGCAAGGACAAATCAGTGTAAAGAACTCCTAAACAGCCTTATCTTTTC                   ]
[+] EMBL CA766112             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGTGTCCATACAGGGCAGATGGTCCTCAGGCTCGTCGAGGCTATCGATGTGTATCTTGCTGGAACAGTCATGCTGATTTTTGGGATGGGTCTGTATGGGCTGTTCATCAGCAACGATTTTCCTGATGTACCTGCATCTGATCGTGCTCTCAAGGGATCATCCTTGTTTGGCATGTTAGCTTTGAAGGAGAGACCGAGGTGGATGAGAATCAGCTCTCTCGGTGAGCTCAAAACAAAGCTGGGCCACATCATCGTGATGATTCTCCTGGTGAAGATGTTCGAGAGGAGCAAGATGGTGCACATCACCACGGGAATGGACCTGCTCAGCTACGCGGTCTGCATCTTCTTGTCGTCGGCTTCCCTGTACATCCTGCACAACCTTCATCGCCCAGAACACGAGTAGTACATGATTGCAGCGCCGGACATGTTGCCTTCTACTCAGTAGTATTTTTTATAGCACATGCCATATAGGAAGAACTCATTGCCTCAGTGCTTGTATTTTGTAGCACTAGAACTGTTGCTAGGCAAGCCCTGATGCTGGGCTAAAACGGATTGCAAGGACAAATCAGTGTAAAGAACTCCTAAACAGCCTTATCTTTTCGTTTATGCTTATGCTTACG]


>consensus_3221#0 CCACGTCCGTTTCCGTACTCCACTCGTGGCAGGCAAACCAGCAGCATTCGAGCTGATGGC TGCTCTCGCGGTGGTGCACGGTTGGCTCGCTCCAGCGTTGTCCCGGCGCGCGGAGACGGG CGGTGGCCGCGCCGCGCTTCCGTGTCGTAGGCCCCGGCTCGTGGCAGTCGCGTGCGCTGC CTCGTCGGTTAATACGGCCACTACTACGGGCGAATCGCCGCTGGGCTCCGATGGCTCGGC AGCCGCCGCCATGTCGCTGGAGCGCGCGTTCGCCGGAGGGGACGGCGGTGGCGGCGGAGG CATTGGCCCCGCGGTCGAGTCCACCGTTGAGAAGCTGATATTCGATTTCCGTTTCCTGGC TCTCCTCGCCGTCGCCGGCTCCCTCCTCTGCTTCCTCAGTGGTTGTGTGTACATTAAAGA AGCATACCATGTCTACTGGACAAGCTGTGTTAGAGGTGTCCATACAGGGCAGATGGTCCT CAGGCTCGTCGAGGCTATCGATGTGTATCTTGCTGGAACAGTCATGCTGATTTTTGGGAT GGGTCTGTATGGGCTGTTCATCAGCAACGATTTTCCTGATGTACCTGCATCTGATCGTGC TCTCAAGGGATCATCCTTGTTTGGCATGTTTGCTTTGAAGGAGAGACCGAGGTGGATGAG AATCAGCTCTCTCGATGAGCTCAAAACGAAGCTGGGCCACATCATCGTGATGATTCTCCT GGTGAAGATGTTCGAGAGGAGCAAGATGGTGCACATCACCACGGGAATGGACCTGCTCAG CTACGCGGTCTGCATCTTCTTGTCGTCGGCTTCCCTGTACATCCTGCACAACCTTCATCG CCCAGAACACGAGTAGTACATGATTGCAGCGCCGGACATGTTGCCTTCTACTCAGTAGTA TTTTTTATAGCACATGCCATATAGGAAGAACTCATTGCCTCAGTGCTTGTATTTTGTAGC ACTAGAACTGTTGCTAGGCAAGCCCTGATGCTGGGCTTAAACGGATTGCAAGGACAAATC AGTGTAAAGAACTCCTAAACAGCCTTATCTTTTCGTTTATGCTTATGCTTACG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)