These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCGCCGCACCTCCTCTTCCTCCTCCTCCCCTTAACCCTCCATGCTGCAAGATGACGGCGATGGCGGCGTGGCCAGATCCGGCTCCGCCCCTTAACCTTCCTCTCGCCCCTTCATATCANCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA756022 [CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCGCCGCACCTCCTCTTCCTCCTCCTCCCCTTAACCCTCCATGCTGCAAGATGACGGCGATGGCGGCGTGGCCAGATCCGGCTCCGCCCCTTAACCTTCCTCTCGCCCCTTCATATCANCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_3225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAAAGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCCCCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNGCGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGATGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCATCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC] [-] EMBL BE229165 [ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAAAGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCCCCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNGCGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGATGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCATCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3225#0 ------------------------------------------------------------ consensus_3225#1 ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAA 60 consensus_3225#0 ------------------------------------------------------------ consensus_3225#1 AGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCC 120 consensus_3225#0 ------------------CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCG 42 consensus_3225#1 CCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNG 180 *** *** * **** * * * * ** ** * consensus_3225#0 CCGCACCTCCTCTTCCTCCTCCT--CCCCTTAACCCTCCATGCTGCAA-GATGACGGCGA 99 consensus_3225#1 CGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGA 240 * * ** * * ** ** ** * **** ** * ******* **** *********** consensus_3225#0 TGGCGGCGTGGCCAGATCCGGCTCCG-CCCCTTAACCTT-CCTCTCGCCCCTTCATATCA 157 consensus_3225#1 TGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCA 300 *** ***************** **** *** ***** ** *** **************** consensus_3225#0 NCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAA 217 consensus_3225#1 TCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAA 360 ****************************** **************************** consensus_3225#0 CGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTC 277 consensus_3225#1 CGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTC 420 ************************************************************ consensus_3225#0 CCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAG 337 consensus_3225#1 CCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAG 480 ************************************************************ consensus_3225#0 CGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTT 397 consensus_3225#1 CGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTT 540 ************************************************************ consensus_3225#0 ATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNN 457 consensus_3225#1 ATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC----------------- 583 ******** ********************************** consensus_3225#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 517 consensus_3225#1 ------------------------------------------------------------ consensus_3225#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 577 consensus_3225#1 ------------------------------------------------------------ consensus_3225#0 NNNNNNNNNNNNNNNNNNN 596 consensus_3225#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||