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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3225 cluster # 3225       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3225#0 length = 596 sequences # 1  
consensus_3225#1 length = 583 sequences # 1  

consensusID : consensus_3225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence
                              [CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCGCCGCACCTCCTCTTCCTCCTCCTCCCCTTAACCCTCCATGCTGCAAGATGACGGCGATGGCGGCGTGGCCAGATCCGGCTCCGCCCCTTAACCTTCCTCTCGCCCCTTCATATCANCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA756022             [CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCGCCGCACCTCCTCTTCCTCCTCCTCCCCTTAACCCTCCATGCTGCAAGATGACGGCGATGGCGGCGTGGCCAGATCCGGCTCCGCCCCTTAACCTTCCTCTCGCCCCTTCATATCANCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]


>consensus_3225#0 CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCGCCGCACCTCCTCTTCCTC CTCCTCCCCTTAACCCTCCATGCTGCAAGATGACGGCGATGGCGGCGTGGCCAGATCCGG CTCCGCCCCTTAACCTTCCTCTCGCCCCTTCATATCANCCATTGGAGCTCGGGGGTGGCC AGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAA GCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGT AGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATAT CTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATNAATAATTCGTGTAA TTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN



consensusID : consensus_3225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAAAGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCCCCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNGCGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGATGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCATCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC]

[-] EMBL BE229165             [ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAAAGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCCCCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNGCGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGATGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCATCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC]


>consensus_3225#1 ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAA AGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCC CCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNG CGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGA TGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCA TCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAA CGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTC CCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAG CGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTT ATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3225#0      ------------------------------------------------------------
consensus_3225#1      ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAA 60
                                                                                  

consensus_3225#0      ------------------------------------------------------------
consensus_3225#1      AGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCC 120
                                                                                  

consensus_3225#0      ------------------CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCG 42
consensus_3225#1      CCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNG 180
                                           ***      *** *   **** * * *  * **  ** *

consensus_3225#0      CCGCACCTCCTCTTCCTCCTCCT--CCCCTTAACCCTCCATGCTGCAA-GATGACGGCGA 99
consensus_3225#1      CGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGA 240
                      * * ** *  * ** ** ** *   ****  ** * ******* **** ***********

consensus_3225#0      TGGCGGCGTGGCCAGATCCGGCTCCG-CCCCTTAACCTT-CCTCTCGCCCCTTCATATCA 157
consensus_3225#1      TGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCA 300
                      *** ***************** **** *** ***** ** *** ****************

consensus_3225#0      NCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAA 217
consensus_3225#1      TCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAA 360
                       ****************************** ****************************

consensus_3225#0      CGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTC 277
consensus_3225#1      CGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTC 420
                      ************************************************************

consensus_3225#0      CCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAG 337
consensus_3225#1      CCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAG 480
                      ************************************************************

consensus_3225#0      CGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTT 397
consensus_3225#1      CGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTT 540
                      ************************************************************

consensus_3225#0      ATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNN 457
consensus_3225#1      ATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC----------------- 583
                      ******** **********************************                 

consensus_3225#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 517
consensus_3225#1      ------------------------------------------------------------
                                                                                  

consensus_3225#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 577
consensus_3225#1      ------------------------------------------------------------
                                                                                  

consensus_3225#0      NNNNNNNNNNNNNNNNNNN 596
consensus_3225#1      -------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)