These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2411 fasta sequence [CCCCCCTCTCACGCGGTCACGCCCTCCGCACCGCACGCCCTCGAGTTTCTCCTCCTCGTCGACGTCGACCTCGCTTACGGCTTCACCCATCCGCAGCCGCCGCCGTCGCCGTCGTCGTACGATTTCCACGCGAGCCGCGATGCCGCCTCCAGCGTGGGGGTGGGGCTCCAACCCGCTGGAGCCCGTCGTCCACACCGTCGCGGCCTTCTCCCGCCGCCTCCTCATTGCCCCCGACGCCGCGCCCGACGAAGCACGCCTCCGCCCCCTCCTCTCCCTCTCCCTCTCCCCTCCGCCCACCCCGCCGTCGCCGCCGCCGCCGCCACCGGAGGTCCTCAAGAAGGATTCGAAGGCGGCGCCCCTGACCAAGGAGGAGGTCGGCAGGGCCACGTGGATGCTGCTCCACACCATCGCAGCGCAGTTTCCTGACGAACCAACCAGGCAACAAAGACGCGATGCGAGAGAGCTGGTAAGCATTAAGCAGGATAAACAGTTAGTGATATCTCTCTAGAGTTTGGGTGGAAGTATGGTAAAGTCCCTTGTTTTGATTTTGGGGGAAACATGAGGACCTTGCTGTCGCTACCCACTCGTAATTTGTCACGGCTAACTACAGGATTGTTGAATCTTAGAAAAGGCACTTTCTTGATGTTTATCTTGGGGGCCTTGTATTCTCCTGCAATGGATCCTGTTTAAGATATAGCTTGTATTTAATTTATTCTTTATGTGCCTTGAAATATTCAAGATTACTTTAAGACTGCACAGTAAAGTTCCAGCATGGTAATCTCGTGATTTTGTTGCTACAGGATGCAGGCTTTGTTCTAGGTGTTCTCCTGGTTCATTCCCCGCTAACTTTGAGCTTAGACATTTTTAGAAAATGTTTTGTGCTTTTGGTCTAGCACAGTTATGAATTACCACTACATTGCTTGACAAATAAATGTTATACTTTGCATCGTTGAAAATGGGTGGCAGTATGTTACGACTACTGCTAAGGTTTCGTTTGGAATCGACTATCTCATTTGATTGAACCTCATTTAGATATATGGGTGTTTGGCTAGCTGTTATTTTTTTTTCTCAATCATGGTGCATACAGATGCATTATCATCATATAAAACATCTGAGTTGAAATTTGATGGATGAGTCTACCAAATTGGATAACTGAGTTTTACAAATTGTTCCATGAAAACTTAAAAAATAAGCATAGGCCAGCACAACAACTGCAAATTGAGCCTCAATCCATGATGAATAATGGGAAGTTCGTTCACTGGTTTTTTACTCGCTTTAACGAAGAGGAATTATTTTATTATTTCCTGAAGAATTACATTTTTCTGCATCTCATTATTCCTTTTGCTTGGTTACTTGGTTCATGCAAGGTCACATTTCTGCTGCTTTTTATGTTCAGATGGCTATAATATCTAGACTCTATCCTTGCAAAGAATGTGCGGAACACTTCAAAGAAGTTTTAAAGTAAGAAATGCTCTCCAACCACTAGCATAAATTATAGTATCCATTTTGATAGTTTGATTCCTCGAGATGTGTTTCTGTGTGACAGGACTATGTTTTGTTGAAATGTTGGTATGTAATACATTATCAACCTTTATCCATTCATTGTTTTAGGGCGAGATATAACATCATGTAGGAACTATAAATTCTTTGTACTTTTGCATTATGAAACTGTGCTTCTGGATCTTTTATATTCTAAAGCTATGCATCCACAAACTCGTTTAAAAACTTTTTAGTTATTTTACACCATCTGTACCTTTTGGGAATATGATTTACAGAAGCTATGGTGATAATGGGATGTGGGAATTGGATGTAACAATCCATTTATAAGCTCATTTCTCTTATAGCTATTTTTCATTTACTTTTATGGTTATAATGTCGTTTTTGCTGTCATAGTTTATTATGTTCCAGTTATATCCAGCTGCCAATTTCTGTTGTTCTGTTTTTTTCTTGTGCTGCCCTTAAATTTTCATGTTTGTGCTCAATGTAGCAACAATAAACTGTCTCGGCACAATATTGAACTGACTTCTTTATGTTCTTTTTGCTTAGAGCAAATCCTGTGCAGGCAGGATCTCAGGCTGAATTCTCTCAGTGGTTATGCTACGTGCACAATGTGGTCAATCGAAGCCTTGGAAAACCTATATTTCCTTGCCAGAGAGTAAATGCACGGTGGGGTAAGCTGGATTGTCCTGAACGCTCTTGTGATCTAGAAGGCTCCAACGACATCATCCCGAATAGGTGACATTAGATAGGGATCGTTTAGAAATTCTGGAACAGTGACAAAGTTTAAACCATCACTGGATGGGCAGCATGAAGAGCATATGGGAAAAGAATTATAACGCCGTGCCGGCATTCTTCCTATACCCTTGTAATACTAGTGTATCAAATGTGATTTCATTTTGTTATTTACAAGC] [+] EMBL AK102625 [CCCCCCTCTCACGCGGTCACGCCCTCCGCACCGCACGCCCTCGAGTTTCTCCTCCTCGTCGACGTCGACCTCGCTTACGGCTTCACCCATCCGCAGCCGCCGCCGTCGCCGTCGTCGTACGATTTCCACGCGAGCCGCGATGCCGCCTCCAGCGTGGGGGTGGGGCTCCAACCCGCTGGAGCCCGTCGTCCACACCGTCGCGGCCTTCTCCCGCCGCCTCCTCATTGCCCCCGACGCCGCGCCCGACGAAGCACGCCTCCGCCCCCTCCTCTCCCTCTCCCTCTCCCCTCCGCCCACCCCGCCGTCGCCGCCGCCGCCGCCACCGGAGGTCCTCAAGAAGGATTCGAAGGCGGCGCCCCTGACCAAGGAGGAGGTCGGCAGGGCCACGTGGATGCTGCTCCACACCATCGCAGCGCAGTTTCCTGACGAACCAACCAGGCAACAAAGACGCGATGCGAGAGAGCTGGTAAGCATTAAGCAGGATAAACAGTTAGTGATATCTCTCTAGAGTTTGGGTGGAAGTATGGTAAAGTCCCTTGTTTTGATTTTGGGGGAAACATGAGGACCTTGCTGTCGCTACCCACTCGTAATTTGTCACGGCTAACTACAGGATTGTTGAATCTTAGAAAAGGCACTTTCTTGATGTTTATCTTGGGGGCCTTGTATTCTCCTGCAATGGATCCTGTTTAAGATATAGCTTGTATTTAATTTATTCTTTATGTGCCTTGAAATATTCAAGATTACTTTAAGACTGCACAGTAAAGTTCCAGCATGGTAATCTCGTGATTTTGTTGCTACAGGATGCAGGCTTTGTTCTAGGTGTTCTCCTGGTTCATTCCCCGCTAACTTTGAGCTTAGACATTTTTAGAAAATGTTTTGTGCTTTTGGTCTAGCACAGTTATGAATTACCACTACATTGCTTGACAAATAAATGTTATACTTTGCATCGTTGAAAATGGGTGGCAGTATGTTACGACTACTGCTAAGGTTTCGTTTGGAATCGACTATCTCATTTGATTGAACCTCATTTAGATATATGGGTGTTTGGCTAGCTGTTATTTTTTTTTCTCAATCATGGTGCATACAGATGCATTATCATCATATAAAACATCTGAGTTGAAATTTGATGGATGAGTCTACCAAATTGGATAACTGAGTTTTACAAATTGTTCCATGAAAACTTAAAAAATAAGCATAGGCCAGCACAACAACTGCAAATTGAGCCTCAATCCATGATGAATAATGGGAAGTTCGTTCACTGGTTTTTTACTCGCTTTAACGAAGAGGAATTATTTTATTATTTCCTGAAGAATTACATTTTTCTGCATCTCATTATTCCTTTTGCTTGGTTACTTGGTTCATGCAAGGTCACATTTCTGCTGCTTTTTATGTTCAGATGGCTATAATATCTAGACTCTATCCTTGCAAAGAATGTGCGGAACACTTCAAAGAAGTTTTAAAGTAAGAAATGCTCTCCAACCACTAGCATAAATTATAGTATCCATTTTGATAGTTTGATTCCTCGAGATGTGTTTCTGTGTGACAGGACTATGTTTTGTTGAAATGTTGGTATGTAATACATTATCAACCTTTATCCATTCATTGTTTTAGGGCGAGATATAACATCATGTAGGAACTATAAATTCTTTGTACTTTTGCATTATGAAACTGTGCTTCTGGATCTTTTATATTCTAAAGCTATGCATCCACAAACTCGTTTAAAAACTTTTTAGTTATTTTACACCATCTGTACCTTTTGGGAATATGATTTACAGAAGCTATGGTGATAATGGGATGTGGGAATTGGATGTAACAATCCATTTATAAGCTCATTTCTCTTATAGCTATTTTTCATTTACTTTTATGGTTATAATGTCGTTTTTGCTGTCATAGTTTATTATGTTCCAGTTATATCCAGCTGCCAATTTCTGTTGTTCTGTTTTTTTCTTGTGCTGCCCTTAAATTTTCATGTTTGTGCTCAATGTAGCAACAATAAACTGTCTCGGCACAATATTGAACTGACTTCTTTATGTTCTTTTTGCTTAGAGCAAATCCTGTGCAGGCAGGATCTCAGGCTGAATTCTCTCAGTGGTTATGCTACGTGCACAATGTGGTCAATCGAAGCCTTGGAAAACCTATATTTCCTTGCCAGAGAGTAAATGCACGGTGGGGTAAGCTGGATTGTCCTGAACGCTCTTGTGATCTAGAAGGCTCCAACGACATCATCCCGAATAGGTGACATTAGATAGGGATCGTTTAGAAATTCTGGAACAGTGACAAAGTTTAAACCATCACTGGATGGGCAGCATGAAGAGCATATGGGAAAAGAATTATAACGCCGTGCCGGCATTCTTCCTATACCCTTGTAATACTAGTGTATCAAATGTGATTTCATTTTGTTATTTACAAGC] consensusID : consensus_3226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [AATTAAGGCACCCTTTTACCATAAAGGGCCTTGGAAAACCTATATTTCCTTGCCCGAGAGTAAATGCCCGGTGGGGTAACTGGATTGTCCTGAACGCTCTTGTGATCTAGAAGGCTCCCACGACATCATCCCGATAGATGACCTTAGATAGGGATCGTTTAGAAATTCTGGAACACGTGACCAAGTTTAAACCCTCACTGGATGGGCAGCCTGAAGAGCATATGGGAAAAGAATTATAACGCCGTGCCGGCACTTCTTCCTATACCCCTGTAATACTAGTGTATCCAATGTGATTTCATTTTGTTATTTACCAGCTTCAGCTCTGAAGATTTTTGCTGAGGTTGTCATTTTTGTGGATTTATATACTTCGTTCTGATGCTTTGATTCCAAAAAAAAAA] [+] EMBL BI804975 [AATTAAGGCACCCTTTTACCATAAAGGGCCTTGGAAAACCTATATTTCCTTGCCCGAGAGTAAATGCCCGGTGGGGTAACTGGATTGTCCTGAACGCTCTTGTGATCTAGAAGGCTCCCACGACATCATCCCGATAGATGACCTTAGATAGGGATCGTTTAGAAATTCTGGAACACGTGACCAAGTTTAAACCCTCACTGGATGGGCAGCCTGAAGAGCATATGGGAAAAGAATTATAACGCCGTGCCGGCACTTCTTCCTATACCCCTGTAATACTAGTGTATCCAATGTGATTTCATTTTGTTATTTACCAGCTTCAGCTCTGAAGATTTTTGCTGAGGTTGTCATTTTTGTGGATTTATATACTTCGTTCTGATGCTTTGATTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3226#0 CCCCCCTCTCACGCGGTCACGCCCTCCGCACCGCACGCCCTCGAGTTTCTCCTCCTCGTC 60 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GACGTCGACCTCGCTTACGGCTTCACCCATCCGCAGCCGCCGCCGTCGCCGTCGTCGTAC 120 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GATTTCCACGCGAGCCGCGATGCCGCCTCCAGCGTGGGGGTGGGGCTCCAACCCGCTGGA 180 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GCCCGTCGTCCACACCGTCGCGGCCTTCTCCCGCCGCCTCCTCATTGCCCCCGACGCCGC 240 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GCCCGACGAAGCACGCCTCCGCCCCCTCCTCTCCCTCTCCCTCTCCCCTCCGCCCACCCC 300 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GCCGTCGCCGCCGCCGCCGCCACCGGAGGTCCTCAAGAAGGATTCGAAGGCGGCGCCCCT 360 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GACCAAGGAGGAGGTCGGCAGGGCCACGTGGATGCTGCTCCACACCATCGCAGCGCAGTT 420 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TCCTGACGAACCAACCAGGCAACAAAGACGCGATGCGAGAGAGCTGGTAAGCATTAAGCA 480 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GGATAAACAGTTAGTGATATCTCTCTAGAGTTTGGGTGGAAGTATGGTAAAGTCCCTTGT 540 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TTTGATTTTGGGGGAAACATGAGGACCTTGCTGTCGCTACCCACTCGTAATTTGTCACGG 600 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CTAACTACAGGATTGTTGAATCTTAGAAAAGGCACTTTCTTGATGTTTATCTTGGGGGCC 660 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TTGTATTCTCCTGCAATGGATCCTGTTTAAGATATAGCTTGTATTTAATTTATTCTTTAT 720 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GTGCCTTGAAATATTCAAGATTACTTTAAGACTGCACAGTAAAGTTCCAGCATGGTAATC 780 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TCGTGATTTTGTTGCTACAGGATGCAGGCTTTGTTCTAGGTGTTCTCCTGGTTCATTCCC 840 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CGCTAACTTTGAGCTTAGACATTTTTAGAAAATGTTTTGTGCTTTTGGTCTAGCACAGTT 900 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 ATGAATTACCACTACATTGCTTGACAAATAAATGTTATACTTTGCATCGTTGAAAATGGG 960 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TGGCAGTATGTTACGACTACTGCTAAGGTTTCGTTTGGAATCGACTATCTCATTTGATTG 1020 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 AACCTCATTTAGATATATGGGTGTTTGGCTAGCTGTTATTTTTTTTTCTCAATCATGGTG 1080 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CATACAGATGCATTATCATCATATAAAACATCTGAGTTGAAATTTGATGGATGAGTCTAC 1140 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CAAATTGGATAACTGAGTTTTACAAATTGTTCCATGAAAACTTAAAAAATAAGCATAGGC 1200 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CAGCACAACAACTGCAAATTGAGCCTCAATCCATGATGAATAATGGGAAGTTCGTTCACT 1260 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GGTTTTTTACTCGCTTTAACGAAGAGGAATTATTTTATTATTTCCTGAAGAATTACATTT 1320 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TTCTGCATCTCATTATTCCTTTTGCTTGGTTACTTGGTTCATGCAAGGTCACATTTCTGC 1380 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TGCTTTTTATGTTCAGATGGCTATAATATCTAGACTCTATCCTTGCAAAGAATGTGCGGA 1440 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 ACACTTCAAAGAAGTTTTAAAGTAAGAAATGCTCTCCAACCACTAGCATAAATTATAGTA 1500 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TCCATTTTGATAGTTTGATTCCTCGAGATGTGTTTCTGTGTGACAGGACTATGTTTTGTT 1560 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GAAATGTTGGTATGTAATACATTATCAACCTTTATCCATTCATTGTTTTAGGGCGAGATA 1620 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TAACATCATGTAGGAACTATAAATTCTTTGTACTTTTGCATTATGAAACTGTGCTTCTGG 1680 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 ATCTTTTATATTCTAAAGCTATGCATCCACAAACTCGTTTAAAAACTTTTTAGTTATTTT 1740 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 ACACCATCTGTACCTTTTGGGAATATGATTTACAGAAGCTATGGTGATAATGGGATGTGG 1800 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GAATTGGATGTAACAATCCATTTATAAGCTCATTTCTCTTATAGCTATTTTTCATTTACT 1860 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 TTTATGGTTATAATGTCGTTTTTGCTGTCATAGTTTATTATGTTCCAGTTATATCCAGCT 1920 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GCCAATTTCTGTTGTTCTGTTTTTTTCTTGTGCTGCCCTTAAATTTTCATGTTTGTGCTC 1980 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 AATGTAGCAACAATAAACTGTCTCGGCACAATATTGAACTGACTTCTTTATGTTCTTTTT 2040 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GCTTAGAGCAAATCCTGTGCAGGCAGGATCTCAGGCTGAATTCTCTCAGTGGTTATGCTA 2100 consensus_3226#1 -------------------------------------------------------AATTA 5 ** consensus_3226#0 CGTGCACAATGTGGTCAATCGAAGCCTTGGAAAACCTATATTTCCTTGCCAGAGAGTAAA 2160 consensus_3226#1 AG-GCACCCTTTTACCATAAAGGGCCTTGGAAAACCTATATTTCCTTGCCCGAGAGTAAA 64 * **** * * ** *************************** ********* consensus_3226#0 TGCACGGTGGGGTAAGCTGGATTGTCCTGAACGCTCTTGTGATCTAGAAGGCTCCAACGA 2220 consensus_3226#1 TGCCCGGTGGGGTAA-CTGGATTGTCCTGAACGCTCTTGTGATCTAGAAGGCTCCCACGA 123 *** *********** *************************************** **** consensus_3226#0 CATCATCCCGAATAGGTGACATTAGATAGGGATCGTTTAGAAATTCTGGAACA-GTGACA 2279 consensus_3226#1 CATCATCCCGA-TAGATGACCTTAGATAGGGATCGTTTAGAAATTCTGGAACACGTGACC 182 *********** *** **** ******************************** ***** consensus_3226#0 AAGTTTAAACCATCACTGGATGGGCAGCATGAAGAGCATATGGGAAAAGAATTATAACGC 2339 consensus_3226#1 AAGTTTAAACCCTCACTGGATGGGCAGCCTGAAGAGCATATGGGAAAAGAATTATAACGC 242 *********** **************** ******************************* consensus_3226#0 CGTGCCGGCA-TTCTTCCTATACCCTTGTAATACTAGTGTATCAAATGTGATTTCATTTT 2398 consensus_3226#1 CGTGCCGGCACTTCTTCCTATACCCCTGTAATACTAGTGTATCCAATGTGATTTCATTTT 302 ********** ************** ***************** **************** consensus_3226#0 GTTATTTACAAGC----------------------------------------------- 2411 consensus_3226#1 GTTATTTACCAGCTTCAGCTCTGAAGATTTTTGCTGAGGTTGTCATTTTTGTGGATTTAT 362 ********* *** consensus_3226#0 ------------------------------------ consensus_3226#1 ATACTTCGTTCTGATGCTTTGATTCCAAAAAAAAAA 398 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||